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[ Quellcode: seaview  ]

Paket: seaview (1:4.2.10-1) [multiverse]

Links für seaview

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Ubuntu-Ressourcen:

Quellcode-Paket seaview herunterladen:

Betreuer:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (E-Mail-Archiv)
  • Charles Plessy
  • Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

Externe Ressourcen:

Ähnliche Pakete:

Multiplatform interface for sequence alignment and phylogeny

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal W for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows to download sequences from EMBL/GenBank/UniProt using the Internet.

Andere Pakete mit Bezug zu seaview

  • hängt ab von
  • empfiehlt
  • schlägt vor
  • dep: libc6 (>= 2.7)
    Embedded GNU C Library: Shared libraries
    auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
  • dep: libfltk1.1 (>= 1.1.6)
    Fast Light Toolkit - shared libraries
  • dep: libfontconfig1 (>= 2.8.0)
    generic font configuration library - runtime
  • dep: libgcc1 (>= 1:4.1.1)
    GCC support library
  • dep: libstdc++6 (>= 4.1.1)
    The GNU Standard C++ Library v3
  • dep: libx11-6
    X11 client-side library
  • dep: libxft2 (>> 2.1.1)
    FreeType-based font drawing library for X
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: clustalw
    global multiple nucleotide or peptide sequence alignment
  • rec: muscle
    Multiple alignment program of protein sequences
  • rec: phyml
    Phylogenetic estimation using Maximum Likelihood

seaview herunterladen

Download für alle verfügbaren Architekturen
Architektur Paketgröße Größe (installiert) Dateien
amd64 273,5 kB700,0 kB [Liste der Dateien]
i386 255,9 kB664,0 kB [Liste der Dateien]