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[ Source: debian-med  ]

Links for med-bio

Ubuntu Resources:

• Bug Reports
• Ubuntu Changelog
• Copyright File

Download Source Package debian-med:

• [debian-med_0.15.dsc]
• [debian-med_0.15.tar.gz]

Maintainer:

• Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

• Andreas Tille
• Debian-Med Packaging Team (Mail Archive)

It should generally not be necessary for users to contact the original maintainer.

Similar packages:

• med-bio-dev
• science-biology
• med-typesetting
• med-cloud
• med-doc
• med-tasks
• med-config
• med-imaging-dev
• med-epi
• med-imaging
• med-pharmacy

Other Packages Related to med-bio

depends

recommends

suggests

• dep: med-config (= 0.15)

  Debian-Med Project config package

• dep: med-tasks (= 0.15)

  Debian-Med tasks for tasksel

• rec: adun.app

  Molecular Simulator for GNUstep

• rec: amap-align

  Protein multiple alignment by sequence annealing

• rec: biosquid

  utilities for biological sequence analysis

• rec: blast2

  Basic Local Alignment Search Tool

• rec: boxshade

  Pretty-printing of multiple sequence alignments

• rec: dialign

  Segment-based multiple sequence alignment

• rec: dialign-t

  Segment-based multiple sequence alignment

• rec: emboss

  The European Molecular Biology Open Software Suite

• rec: fastdnaml

  [Biology] Tool for construction of phylogenetic trees of DNA sequences

• rec: fastlink

  [Biology] A faster version of pedigree programs of Linkage

• rec: garlic

  A visualization program for biomolecules

• rec: gdpc

  visualiser of molecular dynamic simulations

• rec: gff2aplot

  pair-wise alignment-plots for genomic sequences in PostScript

• rec: gff2ps

  produces PostScript graphical output from GFF-files

• rec: ghemical

  A GNOME molecular modelling environment

• rec: gromacs

  Molecular dynamics simulator, with building and analysis tools

• rec: hmmer

  profile hidden Markov models for protein sequence analysis

• rec: kalign

  Global and progressive multiple sequence alignment

• rec: loki

  [Biology] MCMC linkage analysis on general pedigrees

• rec: melting

  computing the melting temperature of nucleic acid duplex

• rec: mipe

  [Biology] Tools to store PCR-derived data

• rec: mummer

  [Biology] Efficient sequence alignment of full genomes

• rec: muscle

  [Biology] multiple alignment program of protein sequences

• rec: ncbi-epcr

  [Biology] Tool to test a DNA sequence for the presence of sequence tagged sites

• rec: ncbi-tools-bin

  NCBI libraries for biology applications (text-based utilities)

• rec: ncbi-tools-x11

  NCBI libraries for biology applications (X-based utilities)

• rec: njplot

  [Biology] A tree drawing program

• rec: perlprimer

  [Biology] graphical design of primers for PCR

• rec: poa

  Partial Order Alignment for multiple sequence alignment

• rec: primer3

  Tool to design flanking oligo nucleotides for DNA amplification

• rec: probcons

  PROBabilistic CONSistency-based multiple sequence alignment

• rec: proda

  multiple alignment of protein sequences

• rec: pymol

  An OpenGL Molecular Graphics System written in Python

• rec: r-cran-qtl

  GNU R package for genetic marker linkage analysis

• rec: rasmol

  Visualize biological macromolecules

• rec: readseq

  [Biology] Conversion between sequence formats

• rec: seaview

  Multiple sequence alignment editor

• rec: sibsim4

  align expressed RNA sequences on a DNA template

• rec: sigma-align

  Simple greedy multiple alignment of non-coding DNA sequences

• rec: sim4

  tool for aligning cDNA and genomic DNA

• rec: t-coffee

  Multiple Sequence Alignment

• rec: tigr-glimmer

  [Biology] Gene detection in archea and bacteria

• rec: tree-puzzle

  [Biology] Reconstruction of phylogenetic trees by maximum likelihood

  or tree-ppuzzle

  [Biology] Reconstruction of phylogenetic trees by maximum likelihood

• rec: treeviewx

  Displays and prints phylogenetic trees

• rec: wise

  comparison of biopolymers, commonly DNA and protein sequences

• sug: arb

  Package not available

• sug: bugsx

  program to evolve biomorphs using genetic algorithms

• sug: clustalw

  Global multiple nucleotide or peptide sequence alignment

• sug: clustalw-mpi

  [Biology] MPI-distributed global sequence alignment with ClustalW

• sug: clustalx

  GUI for clustalw

• sug: cytoscape

  Package not available

• sug: meme

  Package not available

• sug: molphy

  [Biology] Program Package for MOLecular PHYlogenetics

• sug: mozilla-biofox

  extension of bioinformatics tools for the Firefox and Seamonkey browsers

• sug: phylip

  [Biology] A package of programs for inferring phylogenies

• sug: plasmidomics

  draw plasmids and vector maps with PostScript graphics export

• sug: textopo

  Package not available

• sug: tm-align

  Package not available

• sug: treetool

  [Biology] An interactive tool for displaying trees

• sug: vienna-rna

  Package not available

Download med-bio

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	13.8 kB	164.0 kB	[list of files]