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[ Source: hmmer  ]

Package: hmmer (2.3.2-3) [universe]

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Maintainer:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian-Med Packaging Team (Mail Archive)
  • Matthew Vernon
  • Nelson A. de Oliveira

It should generally not be necessary for users to contact the original maintainer.

Similar packages:

profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. 

 Homepage: http://hmmer.janelia.org/

Tags: Field: Biology, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility

Other Packages Related to hmmer

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.6.1-1)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libpvm3
    Parallel Virtual Machine - shared libraries
  • rec: biosquid
    utilities for biological sequence analysis
  • rec: hmmer-doc (>= 2.3.2-3)
    profile hidden Markov models for protein sequence analysis (docs)
  • sug: hmmer-pvm (>= 2.3.2-3)
    HMMER programs with PVM (Parallel Virtual Machine) support

Download hmmer

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,160.3 kB2,464.0 kB [list of files]
i386 1,058.8 kB2,224.0 kB [list of files]