Package: mafft (6.240-1) [universe]

Links for mafft

Ubuntu Resources:

Download Source Package mafft:

Maintainer:

Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

Debian-Med Packaging Team (Mail Archive)
Charles Plessy

It should generally not be necessary for users to contact the original maintainer.

Similar packages:

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program, which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),
   and five speed-oriented methods:
 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

 Homepage: http://align.bmr.kyushu-u.ac.jp/mafft/software/

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sug: ruby

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Architecture	Package Size	Installed Size	Files
amd64	1,873.0 kB	4,452.0 kB	[list of files]
i386	1,663.1 kB	4,004.0 kB	[list of files]

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