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[ Source: mafft  ]

Paketti: mafft (6.717-1) [universe]

Links for mafft

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Imuroi lähdekoodipaketti mafft:

Ylläpitäjä:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Charles Plessy
  • Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Samankaltaisia paketteja:

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),
and five speed-oriented methods:
 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Muut pakettiin mafft liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.7)
    Embedded GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • rec: blast2
    Basic Local Alignment Search Tool
  • rec: lynx
    Text-mode WWW Browser (transitional package)
  • rec: ruby
    An interpreter of object-oriented scripting language Ruby

Imuroi mafft

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amd64 3,120.4 kt7,084.0 kt [tiedostoluettelo]
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