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[ Paquet source : bioperl-run  ]

Paquet : bioperl-run (1.6.9-1) [universe]

Liens pour bioperl-run

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Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

It should generally not be necessary for users to contact the original maintainer.

Ressources externes :

Paquets similaires :

BioPerl wrappers: scripts

Autres paquets associés à bioperl-run

  • dépendances
  • recommandations
  • suggestions
  • enhances
  • dep: bioperl (>= 1.6.0)
    Perl tools for computational molecular biology
  • dep: libbio-perl-run-perl (= 1.6.9-1)
    BioPerl wrappers: modules
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • rec: amap-align
    Protein multiple alignment by sequence annealing
  • rec: bedtools
    suite of utilities for comparing genomic features
  • rec: blast2
    Basic Local Alignment Search Tool
  • rec: bowtie
    ultrafast memory-efficient short read aligner
  • rec: bwa
    Burrows-Wheeler Aligner
  • rec: clustalw
    global multiple nucleotide or peptide sequence alignment
  • rec: emboss
    european molecular biology open software suite
  • rec: exonerate
    generic tool for pairwise sequence comparison
  • rec: hmmer
    profile hidden Markov models for protein sequence analysis
  • rec: infernal
    inference of RNA secondary structural alignments
  • rec: kalign
    Global and progressive multiple sequence alignment
  • rec: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • rec: maq
    maps short fixed-length polymorphic DNA sequence reads to reference sequences
  • rec: muscle
    Multiple alignment program of protein sequences
  • rec: phyml
    Phylogenetic estimation using Maximum Likelihood
  • rec: primer3
    Tool to design flanking oligo nucleotides for DNA amplification
  • rec: probcons
    PROBabilistic CONSistency-based multiple sequence alignment
  • rec: samtools
    processing sequence alignments in SAM and BAM formats
  • rec: sim4
    tool for aligning cDNA and genomic DNA
  • rec: t-coffee
    Multiple Sequence Alignment
  • rec: tigr-glimmer
    Gene detection in archea and bacteria
  • rec: wise
    comparison of biopolymers, commonly DNA and protein sequences
  • sug: ensembl
    Paquet indisponible
  • sug: gmap
    spliced and SNP-tolerant alignment for mRNA and short reads
  • sug: molphy
    Paquet indisponible
  • sug: paml
    Phylogenetic Analysis by Maximum Likelihood (PAML)
  • sug: phylip
    package of programs for inferring phylogenies

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