Software Packages in "intrepid", Subsection science

abinit (5.3.4.dfsg-3) [universe]

A package for electronic structure calculations

abinit-doc (5.3.4.dfsg-3) [universe]

A package for electronic structure calculations

achilles (2-8) [universe]

An artificial life and evolution simulator

adun.app (0.8.2-1ubuntu2) [universe]

Molecular Simulator for GNUstep

aeskulap (0.2.2b1-2) [universe]

medical image viewer and DICOM network client

altree (1.0.1-3) [universe]

program to perform phylogeny based analyses

altree-examples (1.0.1-3) [universe]

example files for ALTree

amap-align (2.2-1) [universe]

Protein multiple alignment by sequence annealing

apbs (1.0.0-2) [universe]

Adaptive Poisson Boltzmann Solver

astronomical-almanac (5.6-2) [universe]

astronomical almanac - calculate planet and star positions

autodock (4.0.1-3ubuntu1) [universe]

analysis of ligand binding to protein structure

autogrid (4.0.1-3ubuntu1) [universe]

pre-calculate binding of ligands to their receptor

avce00 (2.0.0-2) [universe]

Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.

avida-base (2.0b7-4.2ubuntu1) [universe]

Auto-adaptive genetic system for Artificial Life research

avida-qt-viewer (2.0b7-4.2ubuntu1) [universe]

qt viewer for avida

avida-viewer (2.0b7-4.2ubuntu1) [universe]

ncurses viewer for avida

avogadro (0.8.1-4) [universe]

advanced molecular editor

biococoa.app (1.6.0-7build1) [universe]

Sequence file format conversion for GNUstep

biomode (1.002-7) [universe]

[Biology] An Emacs mode to edit genetic data

bioperl (1.5.2.102-3) [universe]

Perl tools for computational molecular biology

biosquid (1.9g+cvs20050121-2) [universe]

utilities for biological sequence analysis

bkchem (0.12.2-1) [universe]

Python based chemical structures editor

blast2 (1:2.2.18.20080302-2) [universe]

Basic Local Alignment Search Tool

blinken (4:4.1.2-0ubuntu3) [universe]

KDE 4 version of the Simon electronic memory game

bodr (8-1) [universe]

Blue Obelisk Data Repository

boinc-app-seti (5.13+cvs20060510-4) [universe]

SETI@home application for the BOINC client

boxshade (3.3.1-3) [universe]

Pretty-printing of multiple sequence alignments

cassbeam (1.0-7build1) [universe]

A program for Cassegrain antenna modelling

cbflib-bin (0.7.9.1-1) [universe]

utilities to manipulate CBF files

celestia-common (1.5.1+dfsg1-1ubuntu1) [universe]

Datafiles for Celestia, a real-time visual space simulation

celestia-common-nonfree (1.5.1-1) [multiverse]

Non-free datafiles for Celestia, a real-time visual space simulation

celestia-glut (1.5.1+dfsg1-1ubuntu1) [universe]

A real-time visual space simulation (GLUT frontend)

cernlib (2006.dfsg.2-13) [universe]

CERNLIB data analysis suite - general use metapackage

cernlib-core (2006.dfsg.2-13) [universe]

CERNLIB data analysis suite - main libraries and programs

cernlib-core-dev (2006.dfsg.2-13) [universe]

CERNLIB data analysis suite - core development files

cernlib-extras (2006.dfsg.2-13) [universe]

CERNLIB data analysis suite - extra programs

cernlib-montecarlo (2006.dfsg.2-5ubuntu1) [universe]

CERNLIB Monte Carlo libraries

chemtool (1.6.11-2) [universe]

Chemical structures drawing program

clustalw (2.0.9-1) [multiverse]

global multiple nucleotide or peptide sequence alignment

clustalw-mpi (0.14-1) [multiverse]

MPI-distributed global sequence alignment with ClustalW

clustalx (1.83-4) [multiverse]

GUI for Clustal W

complearn-gui (1.0.6-4) [universe]

interactive 3d data mining tool and demo for universal machine learning

complearn-tools (1.1.5-1) [universe]

complearn machine-learning command-line utilities

ctsim (4.5.5-1ubuntu3) [universe]

Computed tomography simulator

ctsim-help (4.5.5-1ubuntu3) [universe]

Online help file for CTSim

dcmtk (3.5.4-3) [universe]

The OFFIS DICOM toolkit command line utilities

dialign (2.2.1-3) [universe]

Segment-based multiple sequence alignment

dialign-tx (1.0.1-2) [universe]

Segment-based multiple sequence alignment

dialign-tx-data (1.0.1-2) [universe]

Common data files for dialign-tx

dicomnifti (2.28.11-1) [universe]

converts DICOM files into the NIfTI format

drawmap (2.5-3) [universe]

draws customized maps, using raw USGS data files

dsdp (5.8-5) [universe]

Software for Semidefinite Programming

dx (1:4.4.4-1) [universe]

OpenDX (IBM Visualization Data Explorer) - main package

dxsamples (4.2.0-1) [universe]

Sample programs for the OpenDX Data Explorer

e00compr (1.0.0-7) [universe]

a program to read/write Arc/Info compressed E00 files

easychem (0.6-5) [universe]

Draw high-quality molecules and 2D chemical formulas

edubuntu-addon-science (0.8)

Edubuntu add-on packages for science education

embassy-domainatrix (0.1.0-1) [universe]

Extra EMBOSS commands to handle domain classification file

embassy-domalign (0.1.0-1) [universe]

Extra EMBOSS commands for protein domain alignment

emboss (5.0.0-7) [universe]

The European Molecular Biology Open Software Suite

emboss-data (5.0.0-7) [universe]

Data files for the EMBOSS package

emboss-explorer (2.2.0-6) [universe]

web-based GUI to EMBOSS

engauge-digitizer (4.1-2) [universe]

interactively extracts numbers from bitmap graphs or maps

ent (1.1debian-1) [universe]

pseudorandom number sequence test program

epigrass (1.5.1-3) [universe]

scientific tool for simulations and scenario analysis in network epidemiology

exonerate (2.0.0-1) [universe]

generic tool for pairwise sequence comparison

extrema (4.3.6-1) [universe]

powerful visualization and data analysis tool

fastdnaml (1.2.2-7) [universe]

[Biology] Tool for construction of phylogenetic trees of DNA sequences

fastlink (4.1P-fix94b-1) [universe]

A faster version of pedigree programs of Linkage

fastlink-doc (4.1P-fix94b-1) [universe]

Some papers about fastlink

fityk (0.8.6-2) [universe]

general-purpose nonlinear curve fitting and data analysis

fslview (3.0+4.0.2-5) [universe]

viewer for (f)MRI and DTI data

fslview-doc (3.0+4.0.2-5) [universe]

Documentation for FSLView

fv (3.0-17ubuntu1) [universe]

a tool for viewing and editing FITS format files

g3data (1:1.5.1-1ubuntu2) [universe]

extract data from scanned graphs

gabedit (2.1.8-2ubuntu1) [universe]

graphical user interface to Ab Initio packages

gamgi (0.13.8+dfsg-0ubuntu1) [universe]

construct, view and analyse atomic structures

gamgi-data (0.13.8+dfsg-0ubuntu1) [universe]

extra data for the gamgi atomic structure display program

garlic (1.6-1) [universe]

A visualization program for biomolecules

gausssum (2.1.4-1) [universe]

parse and display Gaussian, GAMESS, and etc's output

gchempaint (0.8.7-2ubuntu2) [universe]

2D chemical structures editor for the GNOME2 desktop

gcrystal (0.8.6-1ubuntu4) [universe]

lightweight crystal structures visualizer

gcu-bin (0.8.6-1ubuntu4) [universe]

GNOME chemistry utils (helper applications)

gcu-plugin (0.8.6-1ubuntu4) [universe]

GNOME chemistry utils (browser plugin)

gcx (0.9.11-3) [universe]

astronomical image processing and photometry gtk+ application

gdal-bin (1.5.2-2) [universe]

Geospatial Data Abstraction Library - Utility programs

gdis (0.89-2ubuntu2) [universe]

molecular display

gdpc (2.2.4-3) [universe]

visualiser of molecular dynamic simulations

gdpc-examples (2.2.4-3) [universe]

example files for the gdpc program

geant321 (1:3.21.14.dfsg-8ubuntu1) [universe]

[Physics] Particle detector description and simulation tool

geant321-data (1:3.21.14.dfsg-8ubuntu1) [universe]

[Physics] Data for GEANT 3.21 detector simulator

gelemental (1.2.0-3ubuntu1) [universe]

Periodic Table viewer

gelemental-dbg (1.2.0-3ubuntu1) [universe]

Periodic Table viewer (main application debugging symbols)

genesis (2.2.1-12build1) [universe]

general-purpose neural simulator

geotiff-bin (1.2.4-3) [universe]

the GeoTIFF library -- tools

gff2aplot (2.0-5) [universe]

pair-wise alignment-plots for genomic sequences in PostScript

gff2ps (0.98d-3) [universe]

produces PostScript graphical output from GFF-files

glam2 (1064-1) [universe]

gapped protein motifs from unaligned sequences

gmt (4.3.1-3) [universe]

Generic Mapping Tools

gmt-doc-pdf (4.3.1-3) [universe]

PDF docs for GMT, the Generic Mapping Tools

gmt-tutorial (3.4-1.1) [universe]

Data files needed to reproduce the tutorial examples of GMT

gmt-tutorial-pdf (4.3.1-3) [universe]

Tutorial for GMT, the Generic Mapping Tools (PDF)

gperiodic (2.0.10-5) [universe]

periodic table application

gpib-modules-source (3.2.10-2) [universe]

kernel modules for various GPIB boards

gpiv (0.5.2-3) [universe]

graphic user interface program for Particle Image Velocimetry

gpivtools (0.5.2-3) [universe]

Command line programs for Particle Image Velocimetry

gpx2shp (0.69-3) [universe]

convert GPS or GPX file to ESRI Shape file

grass (6.2.3-2.1) [universe]

Geographic Resources Analysis Support System

grass-doc (6.2.3-2.1) [universe]

Geographic Resources Analysis Support System documentation

gri (2.12.17-1) [universe]

a language for scientific illustration

gri-el (2.12.17-1) [universe]

Emacs major-mode for gri, a language for scientific graphics

gromacs (3.3.3-2) [universe]

Molecular dynamics simulator, with building and analysis tools

gromacs-data (3.3.3-2) [universe]

GROMACS molecular dynamics sim, data and documentation

gromacs-lam (3.3.3-2) [universe]

Molecular dynamics sim, binaries for LAM-MPI parallelization

gromacs-mpich (3.3.3-2) [universe]

Molecular dynamics sim, binaries for MPICH parallelization

gromacs-openmpi (3.3.3-2) [universe]

Molecular dynamics sim, binaries for OpenMPI parallelization

gvb (1.1.2-1) [universe]

visual simulator of 1 and 2-dimensional vibrations

gwyddion (2.10-1) [universe]

Scanning Probe Microscopy visualization and analysis

gwyddion-common (2.10-1) [universe]

Gwyddion SPM analysis - common files

gwyddion-plugins (2.10-1) [universe]

Gwyddion SPM analysis - plugins

h5utils (1.10-7ubuntu2) [universe]

HDF5 files visualization tools

harminv (1.3.1-1.1) [universe]

extraction of complex frequencies and amplitudes from time series

hdf5-tools (1.6.6-4ubuntu1) [universe]

Hierarchical Data Format 5 (HDF5) - Runtime tools

hmmer (2.3.2-4) [universe]

profile hidden Markov models for protein sequence analysis

hmmer-pvm (2.3.2-4) [universe]

HMMER programs with PVM (Parallel Virtual Machine) support

hodie (1.4-8) [universe]

prints the date in latin

horae (066-3) [multiverse]

interactive graphical processing and analysis of EXAFS data

ifeffit (2:1.2.10a-5) [multiverse]

An interactive program for XAFS analysis

ifrit (3.2.5-1) [universe]

a powerful tool for visualizing 3-dimensional data sets

imagej (1.40a-1ubuntu1) [multiverse]

Image processing program inspired by NIH Image for the Macintosh

imview (1.1.9c-1) [universe]

Image viewing and analysis application

indi (5:0.5-0ubuntu6)

INDI, instrument neutral distributed interface

israndom (1.0.7-2) [universe]

nonclassical randomness test using data compressors

kalign (2.03-2) [universe]

Global and progressive multiple sequence alignment

kalzium (4:4.1.2-0ubuntu3)

periodic table and chemistry tools for KDE 4

kalzium-data (4:4.1.2-0ubuntu3)

data files for Kalzium

kstars (4:4.1.2-0ubuntu3)

desktop planetarium for KDE 4

kstars-data (4:4.1.2-0ubuntu3)

data files for KStars desktop planetarium

kxterm (2006.dfsg.2-13) [universe]

CERNLIB data analysis suite - KUIP terminal emulator

libbio-ruby (1.1.0-1) [universe]

bioruby tools for computational molecular biology

libbio-ruby1.8 (1.1.0-1) [universe]

bioruby tools for computational molecular biology

libbtk-core-dev (0.8.1-0ubuntu1) [universe]

Biomolecule Toolkit C++ library

libcoinutils0 (2.2.5-1) [universe]

Coin-or collection of utility classes

libcoinutils0-dbg (2.2.5-1) [universe]

Coin-or collection of utility classes

libgeotiff-epsg (1.2.4-3) [multiverse]

the GeoTIFF library -- EPSG Geodetic Parameter Dataset

libghemical-data (2.96-2) [universe]

Molecular Modelling Library (Data Files)

libgpib-bin (3.2.10-2) [universe]

libgpib support applications and configuration

libnecpp-dev (1.2.6+cvs20070816-1.2) [universe]

development files for libnecpp

libnecpp0 (1.2.6+cvs20070816-1.2) [universe]

library to use NEC2++

libworldwind-java (0.5.0-1) [multiverse]

3D Virtual Globe

loki (2.4.7.4-4) [universe]

MCMC linkage analysis on general pedigrees

loki-doc (2.4.7.4-4) [universe]

Postscript manual for loki

mafft (6.240-2) [universe]

Multiple alignment program for amino acid or nucleotide sequences

mayavi (1.5-5) [universe]

A scientific data visualization system

mayavi2 (2.2.0-1) [universe]

A scientific visualization package for 2-D and 3-D data

meep (0.10-2.1build1) [universe]

MIT Electromagnetic Equation Propagation

meep-mpi (0.10-2.1build1) [universe]

MIT Electromagnetic Equation Propagation, parallel (mpich) version

melting (4.2h-2) [universe]

computing the melting temperature of nucleic acid duplex

melting-gui (4.2h-2) [universe]

Graphical user interface for melting

merkaartor (0.0.11~svn7913-1) [universe]

map editor for OpenStreetMap.org

minc-tools (2.0.15-3build1) [universe]

MNI medical image format tools

minisat2 (070721-3) [universe]

Fast and lightweight SAT solver

mipe (1.1-3) [universe]

Tools to store PCR-derived data

mn-fit (5.13-6ubuntu1) [universe]

interactive analysis package for fitting data and histograms

mn-fit-common (5.13-6ubuntu1) [universe]

common files for Mn_Fit

molphy (2.3b3-5) [multiverse]

Program Package for MOLecular PHYlogenetics

montecarlo-base (2006.dfsg.2-5ubuntu1) [universe]

[Physics] Common files for CERNLIB Monte Carlo libraries

montecarlo-data (2006.dfsg.2-5ubuntu1) [universe]

[Physics] data for CERNLIB Monte Carlo libraries

mopac7-bin (1.13-2) [universe]

Semi-empirical Quantum Chemistry Library

mozilla-biofox (1.1.4-3ubuntu2) [universe]

extension of bioinformatics tools for the Firefox and Seamonkey browsers

mpb (1.4.2-11.1build1) [universe]

MIT Photonic-Bands

mpb-mpi (1.4.2-11.1build1) [universe]

MIT Photonic-Bands, parallel (mpich) version

mpqc (2.3.1-3) [universe]

The Massively Parallel Quantum Chemistry Program

mpqc-support (2.3.1-3) [universe]

Support programs and tools for MPQC

mssstest (2.0-2) [multiverse]

Normalisation of disease scores for patients with Multiple Sclerosis

mummer (3.20-2) [universe]

Efficient sequence alignment of full genomes

muscle (3.70+fix1-2) [universe]

Multiple alignment program of protein sequences

mustang (3.0-0ubuntu1) [universe]

Multiple structural alignment of proteins

ncbi-epcr (2.3.10-1) [universe]

Tool to test a DNA sequence for the presence of sequence tagged sites

ncbi-tools-bin (6.1.20080302-2) [universe]

NCBI libraries for biology applications (text-based utilities)

ncbi-tools-x11 (6.1.20080302-2) [universe]

NCBI libraries for biology applications (X-based utilities)

necpp (1.2.6+cvs20070816-1.2) [universe]

NEC2 Evolution Antenna Modelling System

netcdf-bin (1:3.6.2-3.1) [universe]

Programs for reading and writing NetCDF files

njplot (2.2-1) [universe]

A tree drawing program

ogdi-bin (3.2.0~beta1-3.1) [universe]

Open Geographic Datastore Interface Library -- utilities

openbabel (2.2.0-1) [universe]

Convert and manipulate chemical data files

opencascade-tools (6.2-7ubuntu1) [multiverse]

OpenCASCADE CAE platform tools

openjump (1.0-3) [multiverse]

Open Java Unified Mapping Platform JUMP

openmx (3.2.4.dfsg-3) [universe]

Package for nano-scale material simulations

openuniverse (1.0beta3.1+dfsg-0.1ubuntu1) [universe]

3D Universe Simulator

openuniverse-common (1.0beta3.1+dfsg-0.1ubuntu1) [universe]

3D Universe Simulator data files

opj2dat (20080225-2) [universe]

OriginLab Origin project files to data files converter

origami (0.6.8.3-0ubuntu1) [universe]

command-line management tool for Folding @ Home clients

paje.app (1.97+cvs20080110-2build1) [universe]

generic visualization tool (Gantt chart and more)

paraview (3.2.2-1) [universe]

Parallel Visualization Application

paw (1:2.14.04.dfsg.2-6) [universe]

Physics Analysis Workstation - a graphical analysis program

paw++ (1:2.14.04.dfsg.2-6) [universe]

Physics Analysis Workstation (Lesstif-enhanced version)

paw-common (1:2.14.04.dfsg.2-6) [universe]

Physics Analysis Workstation (common files)

paw-demos (1:2.14.04.dfsg.2-6) [universe]

Physics Analysis Workstation examples and tests

perl-ifeffit (2:1.2.10a-5) [multiverse]

Perl extensions for IFEFFIT

perlprimer (1.1.14-3) [universe]

Graphical design of primers for PCR

perlprimer-doc (1.1.14-3) [universe]

Tutorial to perlprimer

php5-gpib (3.2.10-2) [universe]

libgpib PHP5 bindings

phylip (1:3.67-2) [multiverse]

[Biology] A package of programs for inferring phylogenies

phylip-doc (1:3.67-2) [multiverse]

[Biology] A package of programs for inferring phylogenies

picosat (632-1) [universe]

SAT solver with proof and core support

planets (0.1.13-6) [universe]

Gravitation simulation of planetary bodies

poa (2.0+20060928-2) [universe]

Partial Order Alignment for multiple sequence alignment

polyxmass (0.9.2) [universe]

Mass spectrometry software framework

polyxmass-bin (0.9.8-1) [universe]

Mass spectrometry framework - GUI program

polyxmass-bin-common (0.9.8-1) [universe]

Mass spectrometry framework - GUI program arch-indep data

polyxmass-common (0.8.7-2) [universe]

Mass spectrometry framework - essential polymer chemistry data

polyxmass-data (0.8.7-1) [universe]

Mass spectrometry framework - supplementary chemical data

praat (5.0.26-1) [universe]

program for speech analysis and synthesis

primer3 (1.1.4-1) [universe]

Tool to design flanking oligo nucleotides for DNA amplification

probcons (1.12-4) [universe]

PROBabilistic CONSistency-based multiple sequence alignment

probcons-extra (1.12-4) [universe]

Extra programs from the probcons package

proda (1.0-7) [universe]

multiple alignment of protein sequences

proj (4.6.0-1) [universe]

Cartographic projection filter and library

psi3 (3.3.0-3) [universe]

Quantum Chemical Program Suite

pymol (1.1~beta3-3) [universe]

An OpenGL Molecular Graphics System written in Python

python-ifeffit (2:1.2.10a-5) [multiverse]

Python GUI interface and extensions for IFEFFIT

python-necpp (1.2.6+cvs20070816-1.2) [universe]

Python module for using NEC2++

python-nifti (0.20080630.1-1) [universe]

Python interface to the NIfTI I/O libraries

python-pyepl (1.0.29-3) [universe]

module for coding psychology experiments in Python

python-pyepl-common (1.0.29-3) [universe]

module for coding psychology experiments in Python

python-pyode (1.2.0-2) [universe]

open-source Python bindings for The Open Dynamics Engine

qfits-tools (6.2.0-1) [universe]

FITS manipulation tools

qmc (0.94-3build1) [universe]

Quine McClusky Simplification Tool

qsearch-tools (1.0.8-1) [universe]

qsearch machine-learning command-line utilities

qtdmm (0.8.12-2.1ubuntu1) [universe]

GUI for digital multimeter

rasmol (2.7.4.2-2ubuntu1) [universe]

Visualize biological macromolecules

rasmol-doc (2.7.4.2-2ubuntu1) [universe]

Documentation for rasmol

raster3d (2.7s-1ubuntu1) [multiverse]

tools for generating images of proteins or other molecules

readseq (1-7) [universe]

[Biology] Conversion between sequence formats

rnahybrid (2.1-1) [universe]

Fast and effective prediction of microRNA/target duplexes

robot-player (2.0.4-3.2ubuntu2) [universe]

Networked server for robots and sensors

robot-player-dev (2.0.4-3.2ubuntu2) [universe]

Networked server for robots and sensors - development package

robot-player-doc (2.0.4-3.2ubuntu2) [universe]

Networked server for robots and sensors (documentation)

root-plugin-asimage (5.18.00-2ubuntu1) [universe]

AfterImage plugin for ROOT

root-plugin-fftw3 (5.18.00-2ubuntu1) [universe]

FFTw plugin for ROOT

root-plugin-fumili (5.18.00-2ubuntu1) [universe]

Fumili plugin for ROOT

root-plugin-gl (5.18.00-2ubuntu1) [universe]

GL plugin for ROOT

root-plugin-hbook (5.18.00-2ubuntu1) [universe]

Hbook plugin for ROOT

root-plugin-krb5 (5.18.00-2ubuntu1) [universe]

Kerberos (version 5) plugin for ROOT

root-plugin-minuit2 (5.18.00-2ubuntu1) [universe]

Minuit version 2 plugin for ROOT

root-plugin-mysql (5.18.00-2ubuntu1) [universe]

MySQL client plugin for ROOT

root-plugin-netx (5.18.00-2ubuntu1) [universe]

NetX plugin for ROOT

root-plugin-odbc (5.18.00-2ubuntu1) [universe]

ODBC plugin for ROOT

root-plugin-peac (5.18.00-2ubuntu1) [universe]

PEAC plugin for ROOT - run-time libraries

root-plugin-pgsql (5.18.00-2ubuntu1) [universe]

PostgreSQL client plugin for ROOT

root-plugin-proof (5.18.00-2ubuntu1) [universe]

PROOF plugin for ROOT

root-plugin-qt (5.18.00-2ubuntu1) [universe]

Qt plugin for ROOT

root-plugin-sql (5.18.00-2ubuntu1) [universe]

SQL plugin for ROOT

root-plugin-xml (5.18.00-2ubuntu1) [universe]

XML reader plugin for ROOT

root-plugin-xproof (5.18.00-2ubuntu1) [universe]

XPROOF plugin for ROOT

root-system (5.18.00-2ubuntu1) [universe]

Meta package to install all ROOT packages

root-system-bin (5.18.00-2ubuntu1) [universe]

Numerical data analysis framework - general applications

root-system-common (5.18.00-2ubuntu1) [universe]

Common files for ROOT

root-system-proofd (5.18.00-2ubuntu1) [universe]

Parallel ROOt Facility - distributed, parallel computing

root-system-rootd (5.18.00-2ubuntu1) [universe]

ROOT remote file server

root-system-xrootd (5.18.00-2ubuntu1) [universe]

Extented ROOT file server

saods9 (4.0b7-2) [universe]

image display tool for astronomy

seaview (1:2.4-1) [multiverse]

Multiple sequence alignment editor

seesat5 (0.90.10-1.1) [universe]

a satellite location program

sextractor (2.4.4-1) [universe]

source extractor for astronomical images

shogun-octave (0.4.4-2ubuntu2) [universe]

Large Scale Machine Learning Toolbox

shogun-python (0.4.4-2ubuntu2) [universe]

Large Scale Machine Learning Toolbox

shogun-python-modular (0.4.4-2ubuntu2) [universe]

Large Scale Machine Learning Toolbox

shogun-r (0.4.4-2ubuntu2) [universe]

Large Scale Machine Learning Toolbox

shogun-readline (0.4.4-2ubuntu2) [universe]

Large Scale Machine Learning Toolbox

sibsim4 (0.17-1) [universe]

align expressed RNA sequences on a DNA template

sigma-align (1.1.1-3) [universe]

Simple greedy multiple alignment of non-coding DNA sequences

sim4 (0.0.20030921-3) [universe]

tool for aligning cDNA and genomic DNA

sixpack (1:0.64-2ubuntu1) [multiverse]

full-featured package for XAS analysis

slang-xfig (0~svn.192-4) [universe]

produce plots and drawings through Xfig's fig2dev in S-Lang

spass (2.1-4) [universe]

An automated theorem prover for first-order logic with equality

ssystem (1.6-17) [universe]

3D solar system simulator

stage (2.0.3-2ubuntu1) [universe]

Robot simulation for Player

stardata-common (0.5) [universe]

Common framework to manage astronomy packages

starplot (0.95.5-1) [universe]

3-dimensional perspective star map viewer

stellarium (0.9.1-4) [universe]

real-time photo-realistic sky generator

stellarium-data (0.9.1-4) [universe]

datafiles for Stellarium, a real-time photo-realistic sky generator

survex (1.0.39.1-2.1) [universe]

cave surveying and mapping software

survex-aven (1.0.39.1-2.1) [universe]

sophisticated cave survey viewer for Survex

survex-svxedit (1.0.39.1-2.1) [universe]

survey data editor for Survex

t-coffee (5.72-1) [universe]

Multiple Sequence Alignment

t-coffee-doc (5.72-1) [universe]

PDF and HTML accompaning documents to T-Coffee

t-coffee-examples (5.72-1) [universe]

annotated examples for the use of T-Coffee

tcd-utils (20061127-2) [universe]

convert Tide Constituent Database (TCD) files

tessa (0.3.1-4ubuntu3) [universe]

simulation of 3D optical systems with the FDTD method

tessa-mpi (0.3.1-4ubuntu3) [universe]

simulation of 3D optical systems using FDTD on LAM-MPI clusters

therion (0.5.1+nmu1) [universe]

Cave surveying - 2D and 3D drawing software

therion-doc (0.5.1+nmu1) [universe]

Documentation for Therion Cave surveying software

therion-viewer (0.5.1+nmu1) [universe]

Cave surveying - 3D viewer for therion models

theseus (1.1.5-0ubuntu3) [universe]

superimpose macromolecules using maximum likelihood

tigr-glimmer (3.02-1) [universe]

Gene detection in archea and bacteria

tochnog (20010124-3.2) [universe]

A free implicit/explicit finite element analysis program

transcalc (0.14-2) [universe]

microwave and RF transmission line calculator

tree-ppuzzle (5.2-3) [universe]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

tree-puzzle (5.2-3) [universe]

Reconstruction of phylogenetic trees by maximum likelihood

tree-puzzle-doc (5.2-3) [universe]

Reconstruction of phylogenetic trees by maximum likelihood

treetool (2.0.2a-4) [multiverse]

[Biology] An interactive tool for displaying trees

treeviewx (0.5.1-5) [universe]

Displays and prints phylogenetic trees

units-filter (2.8) [universe]

Parser for expressions concerning physical values

v-sim (3.3.3-1ubuntu1) [universe]

Visualize atomic structures

v-sim-common (3.3.3-1ubuntu1) [universe]

Visualize atomic structures

viewmol (2.4.1-13) [universe]

A graphical front end for computational chemistry programs.

weka (3.5.7+tut1-1) [multiverse]

Machine learning algorithms for data mining tasks

wise (2.4.1-5) [universe]

comparison of biopolymers, commonly DNA and protein sequences

worldwind (0.5.0-1) [multiverse]

3D Virtual Globe

xbs (0-7.3) [universe]

3-d models and movies of molecules

xdrawchem (1.9.9-4ubuntu3) [universe]

Chemical structures and reactions editor

xmakemol (5.16-1ubuntu1) [universe]

A program for visualizing atomic and molecular systems

xmds (1.6.6-1ubuntu1) [universe]

eXtensible Multi-Dimensional Simulator

xorsa (0.7.0-12) [universe]

tool for Celestial Mechanics investigations

xplot (1.19-7.2) [universe]

A simple x-y column data plotter for X.

xtide (2.9.5-3ubuntu1) [universe]

provides tide and current predictions

xtide-coastline (20020202-1) [universe]

coastline data for xtide

xtide-data (20070318-3) [universe]

Harmonics data for xtide

xtide-data-nonfree (20070318-2) [multiverse]

Harmonics data for xtide (Canada, Netherlands, Germany and UK)

xtide-wvs1-data (20020219-0ubuntu1) [multiverse]

World Vector Shoreline (wvs) data for xtide

ygraph (0.15-3.1ubuntu1) [universe]

Visualize one-dimensional scientific data

zimpl (2.07.ds1-2) [universe]

mathematical modeling language for optimization problems