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[ Source: embassy-domalign  ]

Package: embassy-domalign (0.1.0-1) [universe]

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Extra EMBOSS commands for protein domain alignment

The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)).

Other Packages Related to embassy-domalign

  • depends
  • recommends
  • suggests
  • dep: emboss-lib
    EMBOSS Libraries
  • dep: libajax5
    EMBOSS library for commands
  • dep: libc6 (>= 2.0) [i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.2.5) [amd64]
  • dep: libfontconfig1 (>= 2.4.0)
    generic font configuration library - runtime
  • dep: libfreetype6 (>= 2.3.5)
    FreeType 2 font engine, shared library files
  • dep: libgd2-xpm (>= 2.0.35.dfsg)
    GD Graphics Library version 2
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libnucleus5
    EMBOSS library for molecular sequence analysis
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libx11-6
    X11 client-side library
  • dep: libxpm4
    X11 pixmap library
  • dep: zlib1g
    compression library - runtime
  • rec: emboss
    The European Molecular Biology Open Software Suite
  • sug: embassy
    Package not available

Download embassy-domalign

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 106.9 kB664 kB [list of files]
i386 105.1 kB648 kB [list of files]