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"lucid" のサブセクション science に含まれるソフトウェアパッケージ

abinit (5.3.4.dfsg-3build1) [universe]
A package for electronic structure calculations
abinit-doc (5.3.4.dfsg-3build1) [universe]
A package for electronic structure calculations
achilles (2-8) [universe]
An artificial life and evolution simulator
adun.app (0.8.2-1ubuntu4) [universe]
Molecular Simulator for GNUstep
aeskulap (0.2.2b1-5) [universe]
medical image viewer and DICOM network client
alien-hunter (1.7-1) [universe]
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.0.1-3) [universe]
program to perform phylogeny based analyses
altree-examples (1.0.1-3) [universe]
example files for ALTree
amap-align (2.2-1) [universe]
Protein multiple alignment by sequence annealing
apbs (1.2.1b-1) [universe]
Adaptive Poisson Boltzmann Solver
astronomical-almanac (5.6-3) [universe]
astronomical almanac - calculate planet and star positions
autodock ( [universe]
analysis of ligand binding to protein structure
autodock-test ( [universe]
test files for AutoDock
autogrid ( [universe]
pre-calculate binding of ligands to their receptor
autogrid-test ( [universe]
test files for AutoGrid
avce00 (2.0.0-2) [universe]
Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.
avida-base (2.0b7-4.2ubuntu1) [universe]
Auto-adaptive genetic system for Artificial Life research
avida-qt-viewer (2.0b7-4.2ubuntu1) [universe]
qt viewer for avida
avida-viewer (2.0b7-4.2ubuntu1) [universe]
ncurses viewer for avida
avogadro (1.0.0-2ubuntu3) [universe]
Molecular Graphics and Modelling System
avogadro-data (1.0.0-2ubuntu3) [universe]
Molecular Graphics and Modelling System (Data Files)
ballview (1.3.2-2) [universe]
A free molecular modeling and molecular graphics tool
bauble (0.9.7-1) [universe]
biodiversity collection manager software application
bibus (1.5.1-3) [universe]
bibliographic database
biococoa.app (1.6.0-8build1) [universe]
biological sequence file format conversion applet for GNUstep
bioperl (1.6.1-1ubuntu1) [universe]
Perl tools for computational molecular biology
bioperl-run (1.6.1-1) [universe]
Wrapper modules for BioPerl
biosquid (1.9g+cvs20050121-2) [universe]
utilities for biological sequence analysis
bist (0.5.1-1) [universe]
chemical drawing tool
bkchem (0.13.0-1) [universe]
Python based chemical structures editor
blast2 (1: [universe]
Basic Local Alignment Search Tool
blinken (4:4.4.2-0ubuntu2) [universe]
KDE 4 version of the Simon electronic memory game
bodr (8-1) [universe]
Blue Obelisk Data Repository
boinc-app-milkyway (0.18d-1) [universe]
Milkyway@home application for the BOINC client
boinc-app-seti (5.13+cvs20060510-6ubuntu1) [universe]
SETI@home application for the BOINC client
boxshade (3.3.1-4) [universe]
Pretty-printing of multiple sequence alignments
bwa (0.5.5-1) [universe]
Burrows-Wheeler Aligner
caret (5.6.1~dfsg.1-4ubuntu2) [universe]
Computerized Anatomical Reconstruction and Editing Toolkit
cassbeam (1.0-8) [universe]
A program for Cassegrain antenna modelling
cbflib-bin ( [universe]
utilities to manipulate CBF files
celestia-common (1.6.0+dfsg-1ubuntu1) [universe]
Datafiles for Celestia, a real-time visual space simulation
celestia-common-nonfree (1.6.0-1) [multiverse]
Non-free datafiles for Celestia, a real-time visual space simulation
celestia-glut (1.6.0+dfsg-1ubuntu1) [universe]
A real-time visual space simulation (GLUT frontend)
cernlib (2006.dfsg.2-14ubuntu2) [universe]
CERNLIB data analysis suite - general use metapackage
cernlib-core (2006.dfsg.2-14ubuntu2) [universe]
CERNLIB data analysis suite - main libraries and programs
cernlib-core-dev (2006.dfsg.2-14ubuntu2) [universe]
CERNLIB data analysis suite - core development files
cernlib-extras (2006.dfsg.2-14ubuntu2) [universe]
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (2006.dfsg.2-5ubuntu3) [universe]
CERNLIB Monte Carlo libraries
cgns-convert (2.5.4-2build1) [universe]
CFD General Notation System - Conversion tools
chemtool (1.6.12-1) [universe]
Chemical structures drawing program
clustalw (2.0.10-1) [multiverse]
global multiple nucleotide or peptide sequence alignment
clustalw-mpi (0.15-1) [multiverse]
MPI-distributed global sequence alignment with ClustalW
clustalx (2.0.12-2) [multiverse]
Multiple alignment of nucleic acid and protein sequences (graphical interface)
coinor-csdp (6.0.1-2) [universe]
A software package for semidefinite programming
coinor-libcgl0 (0.54.2-1) [universe]
Cut Generator Library, a library of cutting-plane generators
coinor-libclp0 (1.10.2-1) [universe]
Coin-or linear programming solver
coinor-libclp0-dbg (1.10.2-1) [universe]
Coin-or linear programming solver
coinor-libcoinutils0 (2.5.1-1) [universe]
Coin-or collection of utility classes
coinor-libcoinutils0-dbg (2.5.1-1) [universe]
Coin-or collection of utility classes
coinor-libdylp0 (1.5.0-3) [universe]
Linear programming solver using the dynamic simplex algorithm
coinor-libflopc++0 (1.0.6-1) [universe]
Formulation of Linear Optimization Problems in C++
coinor-libosi0 (0.100.2-1) [universe]
COIN-OR Open Solver Interface
coinor-libvol0 (1.1.7-1) [universe]
Coin-or linear programming solver
complearn-gui (1.0.7-2) [universe]
interactive 3d data mining tool and demo for universal machine learning
complearn-tools (1.1.6-1) [universe]
complearn machine-learning command-line utilities
ctsim (5.1.3-3) [universe]
Computed tomography simulator
ctsim-help (5.1.3-3) [universe]
Online help file for CTSim
dans-gdal-scripts (0.14-1build1) [universe]
GDAL contributed tools by Geographic Information Network of Alaska
dcmtk (3.5.4-4) [universe]
The OFFIS DICOM toolkit command line utilities
dialign (2.2.1-3) [universe]
Segment-based multiple sequence alignment
dialign-tx (1.0.2-1) [universe]
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-1) [universe]
Common data files for dialign-tx
dicomnifti (2.28.14-1build1) [universe]
converts DICOM files into the NIfTI format
drawmap (2.5-3) [universe]
draws customized maps, using raw USGS data files
drawxtl (5.4+dfsg-5) [universe]
crystal structure viewer
dsdp (5.8-8) [universe]
Software for Semidefinite Programming
dx (1:4.4.4-2ubuntu3) [universe]
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.2.0-1) [universe]
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-1) [universe]
a program to read/write Arc/Info compressed E00 files
easychem (0.6-6) [universe]
Draw high-quality molecules and 2D chemical formulas
ecs (2.0.0.beta2-2build1) [universe]
Code_Saturne Preprocessor
elmer (5.5.0.svn.4262.dfsg-1ubuntu1) [universe]
finite element multiphysics suite - binaries
elmer-common (5.5.0.svn.4262.dfsg-1ubuntu1) [universe]
finite element multiphysics suite - architecture-independent files
embassy-domainatrix (0.1.0+20090715-1) [universe]
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.0+20090715-1) [universe]
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (0.1.0+20980715-1) [universe]
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.68-1) [multiverse]
EMBOSS conversions of the programs in the phylip package
emboss (6.1.0-5) [universe]
the european molecular biology open software suite
emboss-data (6.1.0-5) [universe]
data files for the EMBOSS package
emboss-explorer (2.2.0-7) [universe]
web-based GUI to EMBOSS
engauge-digitizer (4.1-2) [universe]
interactively extracts numbers from bitmap graphs or maps
ent (1.1debian-1ubuntu1) [universe]
pseudorandom number sequence test program
epigrass (2.0b3~dfsg-2) [universe]
scientific tool for simulations and scenario analysis in network epidemiology
eprover (1.0.004-1ubuntu1) [universe]
Theorem prover for first-order logic with equality
eprover-doc-html (1.0.004-1ubuntu1) [universe]
Theorem prover for first-order logic with equality - HTML doc
eprover-examples (1.0.004-1ubuntu1) [universe]
Theorem prover for first-order logic with equality - examples
exonerate (2.2.0-2) [universe]
generic tool for pairwise sequence comparison
extrema (4.4.2-1) [universe]
powerful visualization and data analysis tool
fastdnaml (1.2.2-9) [universe]
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix95-1) [universe]
A faster version of pedigree programs of Linkage
fastlink-doc (4.1P-fix95-1) [universe]
Some papers about fastlink
fityk (0.8.9-1) [universe]
general-purpose nonlinear curve fitting and data analysis
freecad (0.9.2646.5-1) [universe]
An extensible Open Source CAx program (alpha)
fsl (4.1.4-2ubuntu1) [multiverse]
analysis tools for FMRI, MRI and DTI brain imaging
fslview (3.1.2+4.1.4-2) [universe]
viewer for (f)MRI and DTI data
fslview-doc (3.1.2+4.1.4-2) [universe]
Documentation for FSLView
g3data (1:1.5.3-2) [universe]
extract data from scanned graphs
gabedit (2.2.9-1ubuntu1) [universe]
graphical user interface to Ab Initio packages
gamgi (0.14.5-1ubuntu1) [universe]
construct, view and analyse atomic structures
gamgi-data (0.14.5-1ubuntu1) [universe]
extra data for the gamgi atomic structure display program
garlic (1.6-1) [universe]
A visualization program for biomolecules
gausssum (2.2.2-1) [universe]
parse and display Gaussian, GAMESS, and etc's output
gchempaint (0.10.12-2ubuntu1.1) [universe] [security]
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.10.12-2ubuntu1.1) [universe] [security]
lightweight crystal structures visualizer
gcu-bin (0.10.12-2ubuntu1.1) [universe] [security]
GNOME chemistry utils (helper applications)
gcu-plugin (0.10.12-2ubuntu1.1) [universe] [security]
GNOME chemistry utils (browser plugin)
gdal-bin (1.6.3-3build2) [universe]
Geospatial Data Abstraction Library - Utility programs
gdis (0.90-3) [universe]
molecular and crystal model viewer
gdis-data (0.90-3) [universe]
molecular and crystal model viewer (data files)
gdpc (2.2.5-1) [universe]
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-1) [universe]
example files for the gdpc program
geant321 (1:3.21.14.dfsg-8ubuntu2) [universe]
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-8ubuntu2) [universe]
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-3ubuntu3) [universe]
Periodic Table viewer
gelemental-dbg (1.2.0-3ubuntu3) [universe]
Periodic Table viewer (main application debugging symbols)
geotiff-bin (1.2.5-1) [universe]
the GeoTIFF library -- tools
gff2aplot (2.0-5) [universe]
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-3) [universe]
produces PostScript graphical output from GFF-files
glam2 (1064-1) [universe]
gapped protein motifs from unaligned sequences
gmt (4.5.1-1) [universe]
Generic Mapping Tools
gmt-doc-pdf (4.5.1-1) [universe]
PDF docs for GMT, the Generic Mapping Tools
gmt-tutorial (3.4-1.1) [universe]
Data files needed to reproduce the tutorial examples of GMT
gmt-tutorial-pdf (4.5.1-1) [universe]
Tutorial for GMT, the Generic Mapping Tools (PDF)
gperiodic (2.0.10-5) [universe]
periodic table application
gpib-modules-source (3.2.11-0.2ubuntu4) [universe]
kernel modules for various GPIB boards
gpiv (0.6.1-2) [universe]
GUI program for Particle Image Velocimetry
gpiv-mpi (0.6.1-2) [universe]
GUI program for Particle Image Velocimetry - MPI version
gpivtools (0.6.0-1build1) [universe]
command line programs for Particle Image Velocimetry
gpivtools-mpi (0.6.0-1build1) [universe]
command line programs for Particle Image Velocimetry - MPI version
gpx2shp (0.69-3) [universe]
convert GPS or GPX file to ESRI Shape file
grads (2.0.a7.1-3) [universe]
Grid Analysis and Display System for earth science data
grass (6.4.0~rc5+39438-1build2) [universe]
Geographic Resources Analysis Support System
grass-doc (6.4.0~rc5+39438-1build2) [universe]
Geographic Resources Analysis Support System documentation
以下のパッケージによって提供される仮想パッケージです: grass-doc
gri (2.12.19-3) [universe]
a language for scientific illustration
gri-el (2.12.19-3) [universe]
Emacs major-mode for gri, a language for scientific graphics
gromacs (4.0.7-1) [universe]
Molecular dynamics simulator, with building and analysis tools
gromacs-data (4.0.7-1) [universe]
GROMACS molecular dynamics sim, data and documentation
gromacs-lam (4.0.7-1) [universe]
Transition package to gromacs-openmpi
gromacs-mpich (4.0.7-1) [universe]
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (4.0.7-1) [universe]
Molecular dynamics sim, binaries for OpenMPI parallelization
gvb (1.2-2) [universe]
visual simulator of 1 and 2-dimensional vibrations
gwyddion (2.19-1) [universe]
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.19-1) [universe]
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.19-1) [universe]
plugins for Gwyddion SPM analysis tool
h5utils (1.12-2build1) [universe]
HDF5 files visualization tools
harminv (1.3.1-3) [universe]
extraction of complex frequencies and amplitudes from time series
harpia (1.0-0ubuntu1) [universe]
Image Processing/Computer Vision Automatic Prgm. Tool
hdf5-tools (1.8.4-5) [universe]
Hierarchical Data Format 5 (HDF5) - Runtime tools
hmmer (2.3.2-5) [universe]
profile hidden Markov models for protein sequence analysis
hmmer-pvm (2.3.2-5) [universe]
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.4-8) [universe]
prints the date in latin
horae (070-1) [multiverse]
interactive graphical processing and analysis of EXAFS data
hpcc (1.4.0-1) [universe]
HPC Challenge benchmark
ifeffit (2:1.2.11d-1ubuntu1) [multiverse]
An interactive program for XAFS analysis
ifrit (3.2.8-1) [universe]
a powerful tool for visualizing 3-dimensional data sets
imagej (1.43l-1) [universe]
Image processing program inspired by NIH Image for the Macintosh
imview (1.1.9c-5) [universe]
Image viewing and analysis application
indi (5:0.5-0ubuntu7) [universe]
INDI, instrument neutral distributed interface
infernal (1.0.2-1) [universe]
inference of RNA secondary structural alignments
israndom (1.0.7-3) [universe]
nonclassical randomness test using data compressors
jblas (0.3-1) [universe]
A fast linear algebra library for Java
jemboss (6.1.0-5) [universe]
graphical user interface to EMBOSS
kalign (2.04-2) [universe]
Global and progressive multiple sequence alignment
kalzium (4:4.4.2-0ubuntu2)
periodic table and chemistry tools for KDE 4
kalzium-data (4:4.4.2-0ubuntu2)
data files for Kalzium
kstars (4:4.4.2-0ubuntu2)
desktop planetarium for KDE 4
kstars-data (4:4.4.2-0ubuntu2)
data files for KStars desktop planetarium
kxterm (2006.dfsg.2-14ubuntu2) [universe]
CERNLIB data analysis suite - KUIP terminal emulator
last-align (87-1) [universe]
genome-scale comparison of biological sequences
libball1.3 (1.3.2-2) [universe]
Biochemical Algorithms Library
libballview1.3 (1.3.2-2) [universe]
Biochemical Algorithms Library, VIEW framework
libbio-ruby (1.4.0-2) [universe]
bioruby tools for computational molecular biology
libbio-ruby1.8 (1.4.0-2) [universe]
bioruby tools for computational molecular biology
libbiojava-java (1:1.7.1-1) [universe]
Java API to biological data and applications
libbiojava-java-demos (1:1.7.1-1) [universe]
Example programs for BioJava
libbiojava1.7-java (1:1.7.1-1) [universe]
Java API to biological data and applications
libgeotiff-epsg (1.2.5-1) [multiverse]
the GeoTIFF library -- EPSG Geodetic Parameter Dataset
libghemical-data (2.98-2) [universe]
Molecular Modelling Library (data files)
libgpib-bin (3.2.11-0.2ubuntu4) [universe]
libgpib support applications and configuration
libgrib-api-data ( [universe]
grib_api definition files
liblas-bin (1.2.1-1) [universe]
ASPRS LiDAR data translation toolset
libnecpp-dev (1.3.0+cvs20090101-1ubuntu2) [universe]
development files for libnecpp
libnecpp0 (1.3.0+cvs20090101-1ubuntu2) [universe]
library to use NEC2++
libstxxl1 (1.2.1-2) [universe]
C++ STL drop-in replacement for extremely large datasets
libworldwind-java (0.5.0-7) [multiverse]
3D Virtual Globe
lipsia (1.6.0-3) [universe]
analysis suite for MRI and fMRI data
loki ( [universe]
MCMC linkage analysis on general pedigrees
loki-doc ( [universe]
Postscript manual for loki
lutefisk (1.0.5a.cleaned-1) [universe]
de novo interpretation of peptide CID spectra
mafft (6.717-1) [universe]
Multiple alignment program for amino acid or nucleotide sequences
maq (0.7.1-3) [universe]
maps short fixed-length polymorphic DNA sequence reads to reference sequences
massxpert (2.1.1-1) [universe]
linear polymer mass spectrometry software
massxpert-data (2.1.1-1) [universe]
linear polymer mass spectrometry software - arch-indep data
mayavi2 (3.3.0-1) [universe]
A scientific visualization package for 2-D and 3-D data
meep (1.1.1-3build1) [universe]
software package for FDTD simulation
meep-mpi (1.1.1-3build1) [universe]
software package for FDTD simulation, parallel (mpich) version
melting (4.3c-1) [universe]
compute the melting temperature of nucleic acid duplex
melting-gui (4.3c-1) [universe]
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.14+svnfixes~20090912-2build1) [universe]
map editor for OpenStreetMap.org
mgltools-geomutils (1.5.4.cvs.20090603-1) [multiverse]
Python library for geometric analyses
mgltools-pyautodock (1.5.4.cvs.20090603-1) [multiverse]
Python implementation of autodock
mgltools-scenario (1.5.4.cvs.20090514-1) [multiverse]
Python-based viewer of molecular structures
mgltools-symserv (1.5.4.cvs.20090603-1) [multiverse]
Symetry server
mgltools-utpackages (1.5.4.cvs.20090603-1) [multiverse]
UT Austin software Python extensions
mgltools-vision (1.5.4.cvs.20090603-1ubuntu1) [multiverse]
Python-based Visual Programming Environment
minc-tools (2.0.18-1build1) [universe]
MNI medical image format tools
minisat2 (070721-8) [universe]
Fast and lightweight SAT solver
mipe (1.1-3) [universe]
Tools to store PCR-derived data
mitools (1.8.1-1) [universe]
view, convert and perform basic maths with medical image datasets
mmass (2.4.0-4) [universe]
Mass spectrometry tool for proteomics
mn-fit (5.13-7) [universe]
interactive analysis package for fitting data and histograms
mn-fit-common (5.13-7) [universe]
common files for Mn_Fit
molphy (2.3b3-5) [multiverse]
Program Package for MOLecular PHYlogenetics
montecarlo-base (2006.dfsg.2-5ubuntu3) [universe]
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (2006.dfsg.2-5ubuntu3) [universe]
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.14-4) [universe]
Semi-empirical Quantum Chemistry Library (binaries)
mpb (1.4.2-14build1) [universe]
MIT Photonic-Bands
mpb-mpi (1.4.2-14build1) [universe]
MIT Photonic-Bands, parallel (mpich) version
mpqc (2.3.1-4) [universe]
The Massively Parallel Quantum Chemistry Program
mpqc-support (2.3.1-4) [universe]
Support programs and tools for MPQC
mrpt-apps (0.8.1svn1408-1) [universe]
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-libs (0.8.1svn1408-1) [universe]
Mobile Robot Programming Toolkit - All the libraries
mssstest (3.0-2) [multiverse]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.22~dfsg-2) [universe]
Efficient sequence alignment of full genomes
muscle (3.70+fix1-2) [universe]
Multiple alignment program of protein sequences
music-bin (1.0.6-1) [universe]
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.1-1) [universe]
multiple structural alignment of proteins
mustang-testdata (3.2.1-1) [universe]
multiple structural alignment of proteins, test data
ncbi-epcr (2.3.12-1) [universe]
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20090809-1) [universe]
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-tools-bin (6.1.20090809-1) [universe]
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20090809-1) [universe]
NCBI libraries for biology applications (X-based utilities)
ncview (1.93g-1) [universe]
A X11 visual browser for NetCDF format files
necpp (1.3.0+cvs20090101-1ubuntu2) [universe]
NEC2 Evolution Antenna Modelling System
netcdf-bin (1:3.6.3-1) [universe]
Programs for reading and writing NetCDF files
njplot (2.3-2) [universe]
A phylogenetic tree drawing program
objcryst-fox (1.8.2~r1158-1) [universe]
Free Objects for Xtallography
odin (1.8.1-1) [universe]
develop, simulate and run magnetic resonance sequences
ogdi-bin (3.2.0~beta2-5) [universe]
Open Geographic Datastore Interface Library -- utilities
openbabel (2.2.3-1build1) [universe]
Chemical toolbox utilities
opencascade-draw (6.3.0.dfsg.1-4) [universe]
OpenCASCADE CAE platform shared library
opencascade-wok (6.3.0.dfsg.1-4) [universe]
OpenCASCADE CAE platform shared library
openjump (1.0-4) [multiverse]
Open Java Unified Mapping Platform JUMP
openmx (3.2.4.dfsg-3build1) [universe]
Package for nano-scale material simulations
openturns-examples (0.13.1-1ubuntu1) [universe]
examples of OpenTURNS functionalities
openturns-validation (0.13.1-1ubuntu1) [universe]
validation files for OpenTURNS
openturns-wrapper (0.13.1-1ubuntu1) [universe]
example of a wrapper for OpenTURNS
openuniverse (1.0beta3.1+dfsg-1build1) [universe]
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-1build1) [universe]
3D Universe Simulator data files
opj2dat (20080225-2) [universe]
OriginLab Origin project files to data files converter
origami (0.7.3-0ubuntu1) [universe]
command-line management tool for Folding @ Home clients
ossim-core (1.7.21-1) [universe]
The OSSIM core utilities
paje.app (1.97+cvs20080110-2build2) [universe]
generic visualization tool (Gantt chart and more)
paraview (3.4.0-4ubuntu6) [universe]
Parallel Visualization Application
paw (1:2.14.04.dfsg.2-7) [universe]
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-7) [universe]
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-7) [universe]
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-7) [universe]
Physics Analysis Workstation examples and tests
perl-ifeffit (2:1.2.11d-1ubuntu1) [multiverse]
Perl extensions for IFEFFIT
perlprimer (1.1.18-1) [universe]
Graphical design of primers for PCR
perlprimer-doc (1.1.18-1) [universe]
Tutorial to perlprimer
php5-gpib (3.2.11-0.2ubuntu4) [universe]
libgpib PHP5 bindings
phylip (1:3.68-2) [multiverse]
[Biology] A package of programs for inferring phylogenies
phylip-doc (1:3.68-2) [multiverse]
[Biology] A package of programs for inferring phylogenies
phyml (1:200900706-2) [universe]
Phylogenetic estimation using Maximum Likelihood
picosat (913-1) [universe]
SAT solver with proof and core support
planets (0.1.13-10) [universe]
Gravitation simulation of planetary bodies
plink (1.06-3) [universe]
whole-genome association analysis toolset
poa (2.0+20060928-2) [universe]
Partial Order Alignment for multiple sequence alignment
praat (5.1.25-1) [universe]
program for speech analysis and synthesis
primer3 (1.1.4-1) [universe]
Tool to design flanking oligo nucleotides for DNA amplification
probcons (1.12-4) [universe]
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-4) [universe]
Extra programs from the probcons package
proda (1.0-7) [universe]
multiple alignment of protein sequences
proj (4.7.0-1) [universe]
Cartographic projection filter and library (transitional package)
proj-bin (4.7.0-1) [universe]
Cartographic projection library (tools)
psi3 (3.4.0-2) [universe]
Quantum Chemical Program Suite
psychopy (1.51.00.dfsg-1) [universe]
environment for creating psychology stimuli in Python
pymol (1.2r1-3) [universe]
Molecular Graphics System
python-ifeffit (2:1.2.11d-1ubuntu1) [multiverse]
Python GUI interface and extensions for IFEFFIT
python-necpp (1.3.0+cvs20090101-1ubuntu2) [universe]
Python module for using NEC2++
python-nifti (0.20090303.1-1) [universe]
Python interface to the NIfTI I/O libraries
python-pyepl (1.1.0-1) [universe]
module for coding psychology experiments in Python
python-pyepl-common (1.1.0-1) [universe]
module for coding psychology experiments in Python
python-pyode (1.2.0-4+cvs20090320) [universe]
Python bindings for The Open Dynamics Engine
qfits-tools (6.2.0-2) [universe]
FITS manipulation tools
qmc (0.94-3build1) [universe]
Quine McClusky Simplification Tool
qsearch-tools (1.0.8-3) [universe]
qsearch machine-learning command-line utilities
qtdmm (0.8.12-2.1ubuntu1) [universe]
GUI for digital multimeter
r-cran-colorspace (1.0.1-1) [universe]
GNU R Color Space Manipulation
r-cran-epibasix (1.1-1) [universe]
GNU R Elementary Epidemiological Functions
r-cran-genetics (1.3.4-1) [universe]
GNU R package for population genetics
r-cran-haplo.stats (1.4.4-1) [universe]
GNU R package for haplotype analysis
r-cran-maptools (0.7.26-1) [multiverse]
GNU R Tools for reading and handling spatial objects
r-cran-msm (0.9.5-1) [universe]
GNU R Multi-state Markov and hidden Markov models in continuous time
r-cran-qvalue (1.20.0-1) [universe]
GNU R package for Q-value estimation for FDR control
r-cran-randomforest (4.5-33-1) [universe]
GNU R package implementing the random forest classificator
r-cran-sp (1:0.9-56-2) [universe]
GNU R classes and methods for spatial data
r-cran-spc (0.21-1) [universe]
GNU R Statistical Process Control
r-cran-surveillance (1.1.2-1) [multiverse]
development and the evaluation of epidemiological outbreak detection algorithms
r-cran-vcd (1.2.7-1) [universe]
GNU R Visualizing Categorical Data
r-cran-xtable (1.5.5-1) [universe]
GNU R coerce data to LaTeX and HTML tables
r-other-bio3d (1.0-6-1) [universe]
GNU R package for biological structure analysis
rasmol (2.7.5-1) [universe]
Visualize biological macromolecules
rasmol-doc (2.7.5-1) [universe]
Documentation for rasmol
raster3d (2.7s-1ubuntu2) [multiverse]
tools for generating images of proteins or other molecules
readseq (1-8) [universe]
[Biology] Conversion between sequence formats
rnahybrid (2.1-2) [universe]
Fast and effective prediction of microRNA/target duplexes
robot-player (2.0.4-3.3ubuntu5) [universe]
Networked server for robots and sensors
robot-player-dev (2.0.4-3.3ubuntu5) [universe]
Networked server for robots and sensors - development package
robot-player-doc (2.0.4-3.3ubuntu5) [universe]
Networked server for robots and sensors (documentation)
rocs (4:4.4.2-0ubuntu2)
graph theory tool for KDE 4
root-plugin-asimage (5.18.00-2.3ubuntu4) [universe]
AfterImage plugin for ROOT
root-plugin-fftw3 (5.18.00-2.3ubuntu4) [universe]
FFTw plugin for ROOT
root-plugin-fumili (5.18.00-2.3ubuntu4) [universe]
Fumili plugin for ROOT
root-plugin-gl (5.18.00-2.3ubuntu4) [universe]
GL plugin for ROOT
root-plugin-hbook (5.18.00-2.3ubuntu4) [universe]
Hbook plugin for ROOT
root-plugin-krb5 (5.18.00-2.3ubuntu4) [universe]
Kerberos (version 5) plugin for ROOT
root-plugin-minuit2 (5.18.00-2.3ubuntu4) [universe]
Minuit version 2 plugin for ROOT
root-plugin-mysql (5.18.00-2.3ubuntu4) [universe]
MySQL client plugin for ROOT
root-plugin-netx (5.18.00-2.3ubuntu4) [universe]
NetX plugin for ROOT
root-plugin-odbc (5.18.00-2.3ubuntu4) [universe]
ODBC plugin for ROOT
root-plugin-peac (5.18.00-2.3ubuntu4) [universe]
PEAC plugin for ROOT - run-time libraries
root-plugin-pgsql (5.18.00-2.3ubuntu4) [universe]
PostgreSQL client plugin for ROOT
root-plugin-proof (5.18.00-2.3ubuntu4) [universe]
PROOF plugin for ROOT
root-plugin-qt (5.18.00-2.3ubuntu4) [universe]
Qt plugin for ROOT
root-plugin-sql (5.18.00-2.3ubuntu4) [universe]
SQL plugin for ROOT
root-plugin-xml (5.18.00-2.3ubuntu4) [universe]
XML reader plugin for ROOT
root-plugin-xproof (5.18.00-2.3ubuntu4) [universe]
XPROOF plugin for ROOT
root-system (5.18.00-2.3ubuntu4) [universe]
Meta package to install all ROOT packages
root-system-bin (5.18.00-2.3ubuntu4) [universe]
Numerical data analysis framework - general applications
root-system-common (5.18.00-2.3ubuntu4) [universe]
Common files for ROOT
root-system-proofd (5.18.00-2.3ubuntu4) [universe]
Parallel ROOt Facility - distributed, parallel computing
root-system-rootd (5.18.00-2.3ubuntu4) [universe]
ROOT remote file server
root-system-xrootd (5.18.00-2.3ubuntu4) [universe]
Extented ROOT file server
samtools (0.1.7a~dfsg-1) [universe]
processing sequence alignments in SAM and BAM formats
sat4j (2.1.1-3) [universe]
Efficient library of SAT solvers in Java
seaview (1:4.2.1-1) [multiverse]
Multiplatform interface for sequence alignment and phylogeny
seesat5 (0.90.10-1.1) [universe]
a satellite location program
sextractor (2.4.4-1) [universe]
source extractor for astronomical images
shogun-cmdline (0.9.1-1build1) [universe]
Large Scale Machine Learning Toolbox
shogun-dbg (0.9.1-1build1) [universe]
Large Scale Machine Learning Toolbox
shogun-elwms (0.9.1-1build1) [universe]
Large Scale Machine Learning Toolbox
shogun-octave (0.9.1-1build1) [universe]
Large Scale Machine Learning Toolbox
shogun-octave-modular (0.9.1-1build1) [universe]
Large Scale Machine Learning Toolbox
shogun-python (0.9.1-1build1) [universe]
Large Scale Machine Learning Toolbox
shogun-python-modular (0.9.1-1build1) [universe]
Large Scale Machine Learning Toolbox
shogun-r (0.9.1-1build1) [universe]
Large Scale Machine Learning Toolbox
sibsim4 (0.17-1) [universe]
align expressed RNA sequences on a DNA template
sigma-align (1.1.3-1) [universe]
Simple greedy multiple alignment of non-coding DNA sequences
sim4 (0.0.20030921-3) [universe]
tool for aligning cDNA and genomic DNA
sixpack (1:0.64-2ubuntu1) [multiverse]
full-featured package for XAS analysis
slang-xfig (0.2.0~.35-1) [universe]
produce plots and drawings through Xfig's fig2dev in S-Lang
spass (2.1-4) [universe]
An automated theorem prover for first-order logic with equality
spatialite-bin (2.3.0-1) [universe]
Geospatial extension for SQLite - tools
ssake (3.4-1) [universe]
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.4-1) [universe]
example data for SSAKE, a genomic assembler of short reads
staden-io-lib-utils (1.12.2-1) [universe]
programs for maniuplating DNA sequencing files
stage (2.0.3-2ubuntu2) [universe]
Robot simulation for Player
stardata-common (0.7) [universe]
Common framework to manage astronomy packages
starplot (0.95.5-3ubuntu1) [universe]
3-dimensional perspective star map viewer
stellarium (0.10.4-0ubuntu1) [universe]
real-time photo-realistic sky generator
stellarium-data (0.10.4-0ubuntu1) [universe]
datafiles for Stellarium, a real-time photo-realistic sky generator
survex ( [universe]
cave surveying and mapping software
survex-aven ( [universe]
sophisticated cave survey viewer for Survex
survex-svxedit ( [universe]
survey data editor for Survex
syrthes (3.4.2-dfsg1-3) [universe]
Transient thermal simulations in complex solid geometries
t-coffee (8.14-1) [universe]
Multiple Sequence Alignment
t-coffee-doc (8.14-1) [universe]
PDF and HTML accompaning documents to T-Coffee
t-coffee-examples (8.14-1) [universe]
annotated examples for the use of T-Coffee
tcd-utils (20061127-2) [universe]
convert Tide Constituent Database (TCD) files
tessa (0.3.1-4ubuntu4) [universe]
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-4ubuntu4) [universe]
simulation of 3D optical systems using FDTD on LAM-MPI clusters
therion (5.2.8-1build1) [universe]
Cave surveying - 2D and 3D drawing software
therion-doc (5.2.8-1build1) [universe]
Documentation for Therion Cave surveying software
therion-viewer (5.2.8-1build1) [universe]
Cave surveying - 3D viewer for therion models
theseus (1.4.3-2) [universe]
superimpose macromolecules using maximum likelihood
tigr-glimmer (3.02-2) [universe]
Gene detection in archea and bacteria
transcalc (0.14-5) [universe]
microwave and RF transmission line calculator
tree-ppuzzle (5.2-5) [universe]
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-5) [universe]
Reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle-doc (5.2-5) [universe]
Reconstruction of phylogenetic trees by maximum likelihood
treeviewx (0.5.1-6) [universe]
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [multiverse]
High-quality 2-D mesh generator binary programs
tunnelx (20090624-1) [universe]
Cave Survey drawing software
ugene (1.5.2+repack-0ubuntu1) [universe]
integrated bioinformatics toolkit
ugene-data (1.5.2+repack-0ubuntu1) [universe]
required data for UGENE - integrated bioinformatics toolkit
units-filter (3.0-1) [universe]
Parser for expressions concerning physical values
v-sim (3.5.0-2) [universe]
Visualize atomic structures
v-sim-common (3.5.0-2) [universe]
Visualize atomic structures (support files)
v-sim-plugins (3.5.0-2) [universe]
Plugins for V_Sim (a 3D visualization package)
velvet (0.7.56~nozlibcopy-1) [universe]
Nucleic acid sequence assembler for very short reads
velvet-example (0.7.56~nozlibcopy-1) [universe]
Example data for the Velvet sequence assembler
viewmol (2.4.1-15) [universe]
A graphical front end for computational chemistry programs.
weka (3.6.0-2) [universe]
Machine learning algorithms for data mining tasks
wise (2.4.1-8) [universe]
comparison of biopolymers, commonly DNA and protein sequences
worldwind (0.5.0-7) [multiverse]
3D Virtual Globe
xbs (0-7.3) [universe]
3-d models and movies of molecules
xdrawchem (1.9.9-4ubuntu4) [universe]
Chemical structures and reactions editor
xfoil (6.97.dfsg-3) [universe]
program for the design and analysis of subsonic airfoils
xmakemol (5.16-3ubuntu1) [universe]
A program for visualizing atomic and molecular systems
xmds (1.6.6-2) [universe]
eXtensible Multi-Dimensional Simulator
xorsa (0.7.0-15) [universe]
tool for Celestial Mechanics investigations
xplot (1.19-8) [universe]
A simple x-y column data plotter.
xplot-xplot.org ( [universe]
fast tool to graph and visualize lots of data
xtide (2.10-2) [universe]
provides tide and current predictions
xtide-coastline (20020202-1) [universe]
coastline data for xtide
xtide-data (20081228-1) [universe]
Harmonics data for xtide
xtide-data-nonfree (20081228-1) [multiverse]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
ygraph (0.16~cvs20090218-1ubuntu1) [universe]
plot and animate data sets
z88 (13.0.0+dfsg2-1) [universe]
Finite Element Analysis Program - runtime
zimpl (3.0.0+dfsg1-4) [universe]
mathematical modeling language for optimization problems
zygrib (3.5.0-3) [universe]
Weather data visualization, GRIB file viewer
zygrib-maps (3.5.0-3) [universe]
Maps for zyGrib weather visualization