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[ Source: exonerate  ]

Package: exonerate (2.2.0-2) [universe]

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Maintainer:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Steffen Moeller
  • Charles Plessy
  • Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Similar packages:

generic tool for pairwise sequence comparison

Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.

An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.

This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb

Other Packages Related to exonerate

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.7)
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libglib2.0-0 (>= 2.12.0)
    The GLib library of C routines
  • sug: wise
    comparison of biopolymers, commonly DNA and protein sequences

Download exonerate

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 3,433.7 kB8,716.0 kB [list of files]
i386 3,218.0 kB7,936.0 kB [list of files]