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[ Source: embassy-domsearch  ]

Package: embassy-domsearch (0.1.0+20980715-1) [universe]

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Extra EMBOSS commands to search for protein domains

The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in this DOMSEARCH release are seqfraggle (removes fragment sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove ambiguous classified sequences from DHF files) and seqwords (Generates DHF files from keyword search of UniProt).

Other Packages Related to embassy-domsearch

  • depends
  • recommends
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  • dep: emboss-lib
    EMBOSS Libraries
  • dep: libajax6
    EMBOSS library for commands
  • dep: libc6 (>= 2.0)
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libfontconfig1 (>= 2.4.0)
    generic font configuration library - runtime
  • dep: libfreetype6 (>= 2.2.1)
    FreeType 2 font engine, shared library files
  • dep: libgd2-xpm (>= 2.0.36~rc1~dfsg)
    GD Graphics Library version 2
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libnucleus6
    EMBOSS library for molecular sequence analysis
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libx11-6
    X11 client-side library
  • dep: libxpm4
    X11 pixmap library
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: emboss
    the european molecular biology open software suite
  • sug: embassy
    Package not available

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Architecture Package Size Installed Size Files
i386 119.7 kB656.0 kB [list of files]