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[ Source: mummer  ]

Package: mummer (3.22~dfsg-2) [universe]

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Maintainer:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Steffen Moeller
  • Andreas Tille
  • Charles Plessy

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Similar packages:

Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

Other Packages Related to mummer

  • depends
  • recommends
  • suggests
  • enhances
  • dep: gawk
    GNU awk, a pattern scanning and processing language
  • dep: libc6 (>= 2.7)
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:4.1.1)
    GCC support library
  • dep: libstdc++6 (>= 4.4.0)
    The GNU Standard C++ Library v3
  • dep: perl
    Larry Wall's Practical Extraction and Report Language

Download mummer

Download for all available architectures
Architecture Package Size Installed Size Files
i386 417.9 kB1,208.0 kB [list of files]