» Ubuntu » Packages » lucid (10.04LTS) » science » ssake
lucid  ] [  precise  ] [  raring  ] [  saucy  ] [  trusty  ] [  utopic  ]
[ Source: ssake  ]

Package: ssake (3.4-1) [universe]

Links for ssake

Screenshot

Ubuntu Resources:

Download Source Package ssake:

Maintainer:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian-Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Charles Plessy

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Similar packages:

genomics application for assembling millions of very short DNA sequences

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

Other Packages Related to ssake

  • depends
  • recommends
  • suggests
  • enhances
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python
    An interactive high-level object-oriented language (default version)
  • sug: ssake-examples
    example data for SSAKE, a genomic assembler of short reads

Download ssake

Download for all available architectures
Architecture Package Size Installed Size Files
all 33.4 kB144.0 kB [list of files]