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[ Source: debian-med  ]

Package: med-bio (1.5ubuntu1) [universe]

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Maintainer:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

It should generally not be necessary for users to contact the original maintainer.

Similar packages:

Debian Med micro-biology packages

This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences.

Other Packages Related to med-bio

  • depends
  • recommends
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  • dep: med-config (= 1.5ubuntu1)
    Debian Med Project config package
  • dep: med-tasks (= 1.5ubuntu1)
    Debian Med tasks for tasksel
  • rec: adun.app
    Molecular Simulator for GNUstep
  • rec: alien-hunter
    Interpolated Variable Order Motifs to identify horizontally acquired DNA
  • rec: altree
    program to perform phylogeny based analyses
  • rec: amap-align
    Protein multiple alignment by sequence annealing
  • rec: autodock
    analysis of ligand binding to protein structure
  • rec: ballview
    A free molecular modeling and molecular graphics tool
  • rec: blast2
    Basic Local Alignment Search Tool
  • rec: boxshade
    Pretty-printing of multiple sequence alignments
  • rec: bwa
    Burrows-Wheeler Aligner
  • rec: dialign
    Segment-based multiple sequence alignment
  • rec: dialign-tx
    Segment-based multiple sequence alignment
  • rec: embassy-domainatrix
    Extra EMBOSS commands to handle domain classification file
  • rec: embassy-domalign
    Extra EMBOSS commands for protein domain alignment
  • rec: embassy-domsearch
    Extra EMBOSS commands to search for protein domains
  • rec: emboss
    the european molecular biology open software suite
  • rec: exonerate
    generic tool for pairwise sequence comparison
  • rec: fastdnaml
    Tool for construction of phylogenetic trees of DNA sequences
  • rec: fastlink
    A faster version of pedigree programs of Linkage
  • rec: gamgi
    construct, view and analyse atomic structures
  • rec: garlic
    A visualization program for biomolecules
  • rec: gdpc
    visualiser of molecular dynamic simulations
  • rec: gff2aplot
    pair-wise alignment-plots for genomic sequences in PostScript
  • rec: gff2ps
    produces PostScript graphical output from GFF-files
  • rec: ghemical
    A GNOME molecular modelling environment
  • rec: glam2
    gapped protein motifs from unaligned sequences
  • rec: gromacs
    Molecular dynamics simulator, with building and analysis tools
  • rec: hmmer
    profile hidden Markov models for protein sequence analysis
  • rec: infernal
    inference of RNA secondary structural alignments
  • rec: kalign
    Global and progressive multiple sequence alignment
  • rec: last-align
    genome-scale comparison of biological sequences
  • rec: loki
    MCMC linkage analysis on general pedigrees
  • rec: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • rec: maq
    maps short fixed-length polymorphic DNA sequence reads to reference sequences
  • rec: massxpert
    linear polymer mass spectrometry software
  • rec: melting
    compute the melting temperature of nucleic acid duplex
  • rec: mipe
    Tools to store PCR-derived data
  • rec: mummer
    Efficient sequence alignment of full genomes
  • rec: muscle
    Multiple alignment program of protein sequences
  • rec: mustang
    multiple structural alignment of proteins
  • rec: ncbi-epcr
    Tool to test a DNA sequence for the presence of sequence tagged sites
  • rec: ncbi-tools-bin
    NCBI libraries for biology applications (text-based utilities)
  • rec: ncbi-tools-x11
    NCBI libraries for biology applications (X-based utilities)
  • rec: njplot
    A phylogenetic tree drawing program
  • rec: perlprimer
    Graphical design of primers for PCR
  • rec: phyml
    Phylogenetic estimation using Maximum Likelihood
  • rec: plasmidomics
    draw plasmids and vector maps with PostScript graphics export
  • rec: poa
    Partial Order Alignment for multiple sequence alignment
  • rec: primer3
    Tool to design flanking oligo nucleotides for DNA amplification
  • rec: probcons
    PROBabilistic CONSistency-based multiple sequence alignment
  • rec: proda
    multiple alignment of protein sequences
  • rec: pymol
    Molecular Graphics System
  • rec: r-bioc-hilbertvis
    GNU R package to visualise long vector data
  • rec: r-cran-qtl
    GNU R package for genetic marker linkage analysis
  • rec: r-other-bio3d
    GNU R package for biological structure analysis
  • rec: r-other-mott-happy
    GNU R package for fine-mapping complex diseases
  • rec: rasmol
    Visualize biological macromolecules
  • rec: readseq
    [Biology] Conversion between sequence formats
  • rec: rnahybrid
    Fast and effective prediction of microRNA/target duplexes
  • rec: samtools
    processing sequence alignments in SAM and BAM formats
  • rec: seaview
    Multiplatform interface for sequence alignment and phylogeny
  • rec: sibsim4
    align expressed RNA sequences on a DNA template
  • rec: sigma-align
    Simple greedy multiple alignment of non-coding DNA sequences
  • rec: sim4
    tool for aligning cDNA and genomic DNA
  • rec: ssake
    genomics application for assembling millions of very short DNA sequences
  • rec: staden-io-lib-utils
    programs for maniuplating DNA sequencing files
  • rec: t-coffee
    Multiple Sequence Alignment
  • rec: theseus
    superimpose macromolecules using maximum likelihood
  • rec: tigr-glimmer
    Gene detection in archea and bacteria
  • rec: tree-puzzle
    Reconstruction of phylogenetic trees by maximum likelihood
    or tree-ppuzzle
    Parallelized reconstruction of phylogenetic trees by maximum likelihood
  • rec: treeviewx
    Displays and prints phylogenetic trees
  • rec: velvet
    Nucleic acid sequence assembler for very short reads
  • rec: wise
    comparison of biopolymers, commonly DNA and protein sequences
  • sug: acedb-other
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  • sug: acedb-other-belvu
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  • sug: acedb-other-dotter
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  • sug: act
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  • sug: agdbnet
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  • sug: amos-assembler
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  • sug: amoscmp
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  • sug: arb
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  • sug: artemis
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  • sug: asap
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  • sug: autodocktools
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  • sug: axparafit
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  • sug: bambus
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  • sug: beast-mcmc
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  • sug: big-blast
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  • sug: bio-mauve
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  • sug: blixem
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  • sug: bowtie
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  • sug: btk-core
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  • sug: caftools
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  • sug: cap3
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  • sug: cd-hit
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  • sug: cdna-db
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  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: clustalw-mpi
    MPI-distributed global sequence alignment with ClustalW
  • sug: clustalx
    Multiple alignment of nucleic acid and protein sequences (graphical interface)
  • sug: cluster3
    Package not available
  • sug: coalesce
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  • sug: codonw
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  • sug: compclust
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  • sug: contralign
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  • sug: coot
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  • sug: copycat
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  • sug: crossbow
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  • sug: cytoscape
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  • sug: das-proserver
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  • sug: decipher
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  • sug: dotter
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  • sug: dotur
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  • sug: ecell
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  • sug: elph
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  • sug: embassy-phylip
    EMBOSS conversions of the programs in the phylip package
  • sug: emboss-explorer
    web-based GUI to EMBOSS
  • sug: emboss-kaptain
    Package not available
  • sug: est-db
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  • sug: estferret
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  • sug: estscan
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  • sug: exalt
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  • sug: martj
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  • sug: mauvealigner
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  • sug: maxd
    Package not available
  • sug: melting-gui
    graphical interface to compute the melting temperature of nucleic acid duplex
  • sug: meme
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  • sug: mesquite
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  • sug: migrate
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  • sug: minimus
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  • sug: mira
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  • sug: mirbase
    Package not available
  • sug: molekel
    Package not available
  • sug: molphy
    Program Package for MOLecular PHYlogenetics
  • sug: mozilla-biofox
    Package not available
  • sug: mrbayes
    A program for the Bayesian estimation of phylogeny
  • sug: msatfinder
    Package not available
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  • sug: murasaki
    Package not available
  • sug: mview
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  • sug: obo-edit
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  • sug: oligoarrayaux
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  • sug: omegamap
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  • sug: paml
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  • sug: partigene
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  • sug: patman
    Package not available
  • sug: pdb2pqr
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  • sug: pfaat
    Package not available
  • sug: pftools
    Package not available
  • sug: phagefinder
    Package not available
  • sug: phpphylotree
    Package not available
  • sug: phylip
    [Biology] A package of programs for inferring phylogenies
  • sug: phylographer
    Package not available
  • sug: phylowin
    Package not available
  • sug: plink
    whole-genome association analysis toolset
  • sug: populations
    Package not available
  • sug: prank
    Package not available
  • sug: proalign
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  • sug: profit
    Package not available
  • sug: prot4est
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  • sug: pyrophosphate-tools
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  • sug: qtlcart
    Package not available
  • sug: r-ape
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  • sug: r-other-genabel
    Package not available
  • sug: raster3d
    tools for generating images of proteins or other molecules
  • sug: raxml
    Package not available
  • sug: rbs-finder
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  • sug: recombine
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  • sug: repeatfinder
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  • sug: reputer
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  • sug: roche454ace2caf
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  • sug: rose
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  • sug: rosetta
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  • sug: seq-gen
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  • sug: seqan-apps
    A C++ template library for the analysis of sequences
  • sug: sequenceconverter.app
    Package not available
  • sug: smile
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  • sug: spice
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  • sug: splitstree
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  • sug: ssaha
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  • sug: tacg
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  • sug: taverna
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  • sug: taxinspector
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  • sug: tetra
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  • sug: tigr-assembler
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  • sug: tm-align
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  • sug: tracetuner
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  • sug: transtermhp
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  • sug: treebuilder3d
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  • sug: treeplot
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  • sug: treevolve
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  • sug: trnascan-se
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  • sug: twain
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  • sug: uniprime
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  • sug: vienna-rna
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  • sug: wgs-assembler
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