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[ Source: dialign-t  ]

Package: dialign-tx (1.0.2-1) [universe]

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Segment-based multiple sequence alignment

DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.

DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies, Algorithms for Molecular Biology 3:6, 2008

Other Packages Related to dialign-tx

  • depends
  • recommends
  • suggests
  • enhances
  • dep: dialign-tx-data (= 1.0.2-1)
    Common data files for dialign-tx
  • dep: libc6 (>= 2.4)
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • enh: t-coffee
    Multiple Sequence Alignment

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Architecture Package Size Installed Size Files
amd64 57.0 kB164.0 kB [list of files]
i386 51.7 kB156.0 kB [list of files]