Package: dialign-tx (1.0.2-1) [universe]
Links for dialign-tx
Download Source Package dialign-t:
Original Maintainers (usually from Debian):
- Debian-Med Packaging Team (Mail Archive)
- Charles Plessy
It should generally not be necessary for users to contact the original maintainer.
- Homepage [dialign-tx.gobics.de]
Segment-based multiple sequence alignment
DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.
DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies, Algorithms for Molecular Biology 3:6, 2008
Other Packages Related to dialign-tx
- dep: dialign-tx-data (= 1.0.2-1)
- Common data files for dialign-tx
- enh: t-coffee
- Multiple Sequence Alignment