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[ Source: embassy-phylip  ]

Package: embassy-phylip (3.68-1) [multiverse]

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EMBOSS conversions of the programs in the phylip package

This package is the adaptation of the PHYLIP package in which its programs can operate with the biological sequence formats and databases of the European Molecular Biology Open Software Suite (EMBOSS). The software packages adapted for EMBOSS are called EMBASSY.

PHYLIP (the PHYLogeny Inference Package) is a package of programs for inferring phylogenies (evolutionary trees). Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites and fragments, distance matrices, and discrete characters.

The EMBASSY PHYLIP programs all have the prefix "f" to distinguish them from the original programs and avoid namespace conflict.

Other Packages Related to embassy-phylip

  • depends
  • recommends
  • suggests
  • enhances
  • dep: emboss-lib
    EMBOSS Libraries
  • dep: libajax6
    EMBOSS library for commands
  • dep: libc6 (>= 2.7)
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libfontconfig1 (>= 2.8.0)
    generic font configuration library - runtime
  • dep: libfreetype6 (>= 2.2.1)
    FreeType 2 font engine, shared library files
  • dep: libgd2-xpm (>= 2.0.36~rc1~dfsg)
    GD Graphics Library version 2
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libnucleus6
    EMBOSS library for molecular sequence analysis
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libx11-6
    X11 client-side library
  • dep: libxaw7
    X11 Athena Widget library
  • dep: libxpm4
    X11 pixmap library
  • dep: libxt6
    X11 toolkit intrinsics library
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Download embassy-phylip

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 2,379.8 kB6,684.0 kB [list of files]
i386 2,105.7 kB6,060.0 kB [list of files]