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[ Source: seaview  ]

Package: seaview (1:4.2.1-1) [multiverse]

Links for seaview

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Download Source Package seaview:

Maintainer:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Charles Plessy
  • Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Similar packages:

Multiplatform interface for sequence alignment and phylogeny

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal W for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows to download sequences from EMBL/GenBank/UniProt using the Internet.

Other Packages Related to seaview

  • depends
  • recommends
  • suggests
  • enhances
  • dep: libc6 (>= 2.7)
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libfltk1.1 (>= 1.1.6)
    Fast Light Toolkit - shared libraries
  • dep: libfontconfig1 (>= 2.8.0)
    generic font configuration library - runtime
  • dep: libgcc1 (>= 1:4.1.1)
    GCC support library
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libstdc++6 (>= 4.1.1)
    The GNU Standard C++ Library v3
  • dep: libx11-6 (>= 0)
    X11 client-side library
  • dep: libxext6
    X11 miscellaneous extension library
  • dep: libxft2 (>> 2.1.1)
    FreeType-based font drawing library for X
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: clustalw
    global multiple nucleotide or peptide sequence alignment
  • rec: muscle
    Multiple alignment program of protein sequences
  • rec: phyml
    Phylogenetic estimation using Maximum Likelihood

Download seaview

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 270.7 kB692.0 kB [list of files]
i386 253.9 kB660.0 kB [list of files]