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[ Source: tree-puzzle  ]

Package: tree-puzzle (5.2-5) [universe]

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Maintainer:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian-Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Charles Plessy

It should generally not be necessary for users to contact the original maintainer.

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Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Other Packages Related to tree-puzzle

  • depends
  • recommends
  • suggests
  • enhances
  • dep: libc6 (>= 2.4)
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libsprng2
    The SPRNG Scalable Parallel RNG library -- library package
  • rec: tree-puzzle-doc
    Reconstruction of phylogenetic trees by maximum likelihood
  • sug: phylip
    [Biology] A package of programs for inferring phylogenies
  • sug: treetool
    Package not available

Download tree-puzzle

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 132.7 kB336.0 kB [list of files]
i386 119.2 kB324.0 kB [list of files]