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Source Package: tophat (2.0.8b-1ubuntu1) [universe]

Links for tophat

Ubuntu Resources:


Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Carlos Borroto
  • Alexandre Mestiashvili
  • Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

External Resources:

The following binary packages are built from this source package:
fast splice junction mapper for RNA-Seq reads

Other Packages Related to tophat

  • build-depends
  • build-depends-indep
  • adep: debhelper (>= 9)
    helper programs for debian/rules
  • adep: autotools-dev
    Update infrastructure for config.{guess,sub} files
  • adep: libbam-dev (>= 0.1.16)
    manipulates nucleotide sequence alignments in BAM or SAM format
  • adep: zlib1g-dev
    compression library - development
  • adep: dh-autoreconf
    debhelper add-on to call autoreconf and clean up after the build
  • adep: python (>= 2.6.6-3~)
    interactive high-level object-oriented language (default version)
  • adep: seqan-dev (>= 1.3~)
    C++ library for the analysis of biological sequences (development)
  • adep: libboost-thread-dev
    portable C++ multi-threading (default version)
  • adep: libboost-system-dev
    Operating system (e.g. diagnostics support) library (default version)
  • adep: help2man
    Automatic manpage generator

Download tophat

FileSize (in kB)MD5 checksum
tophat_2.0.8b-1ubuntu1.dsc 2.2 kB c858bef8e2aed316e6f62e177859b3a8
tophat_2.0.8b.orig.tar.gz 417.0 kB 8a5ea24c912e52ce4bd6b28cfbb5db4b
tophat_2.0.8b-1ubuntu1.debian.tar.gz 6.2 kB 0c1898b266b4c20006d63f997562bc03
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