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[ Källkod: mafft  ]

Paket: mafft (6.717-1) [universe]

Länkar för mafft

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Ubunturesurser:

Hämta källkodspaketet mafft:

Ansvarig:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (E-postarkiv)
  • Charles Plessy
  • Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

Externa resurser:

  • Hemsida [align.bmr.kyushu-u.ac.jp]

Liknande paket:

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),
and five speed-oriented methods:
 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Andra paket besläktade med mafft

  • beror
  • rekommenderar
  • föreslår
  • enhances
  • dep: libc6 (>= 2.7)
    Embedded GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
  • rec: blast2
    Basic Local Alignment Search Tool
  • rec: lynx
    Text-mode WWW Browser (transitional package)
  • rec: ruby
    An interpreter of object-oriented scripting language Ruby
  • enh: t-coffee
    Multiple Sequence Alignment

Hämta mafft

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 3.120,4 kbyte7.084,0 kbyte [filförteckning]
i386 2.279,7 kbyte5.696,0 kbyte [filförteckning]