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[ Källkod: epcr  ]

Paket: ncbi-epcr (2.3.12-1) [universe]

Länkar för ncbi-epcr

Ubunturesurser:

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Ansvarig:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian-Med Packaging Team (E-postarkiv)
  • Steffen Moeller
  • Andreas Tille
  • Charles Plessy

It should generally not be necessary for users to contact the original maintainer.

Externa resurser:

Liknande paket:

Tool to test a DNA sequence for the presence of sequence tagged sites

Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs.

The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontigous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments.

The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database.

Andra paket besläktade med ncbi-epcr

  • beror
  • rekommenderar
  • föreslår
  • dep: libc6 (>= 2.4)
    GNU C-bibliotek: Delade bibliotek
    också ett virtuellt paket som tillhandahålls av libc6-udeb
  • dep: libgcc1 (>= 1:4.1.1)
    GCC stödbibliotek
  • dep: libstdc++6 (>= 4.4.0)
    GNUs Standard C++-bibliotek v3
  • sug: bioperl
    Perl tools for computational molecular biology

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 197,1 kbyte512 kbyte [filförteckning]
i386 195,8 kbyte496 kbyte [filförteckning]