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Software Packages in "trusty", Subsection gnu-r

r-bioc-affy (1.38.1-1) [universe]
BioConductor methods for Affymetrix Oligonucleotide Arrays
r-bioc-affyio (1.28.0-1) [universe]
BioConductor tools for parsing Affymetrix data files
r-bioc-altcdfenvs (2.24.0-1) [universe]
BioConductor alternative CDF environments
r-bioc-annotationdbi (1.22.6-1) [universe]
GNU R Annotation Database Interface for BioConductor
r-bioc-biobase (2.20.0-1build1) [universe]
base functions for Bioconductor
r-bioc-biocgenerics (0.8.0-1) [universe]
generic functions for Bioconductor
r-bioc-biocinstaller (1.10.3-1) [universe]
Install/Update Bioconductor and CRAN Packages
r-bioc-biomart (2.18.0-1) [universe]
GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
r-bioc-biostrings (2.30.1-1) [universe]
GNU R string objects representing biological sequences
r-bioc-biovizbase (1.10.7-1) [universe]
GNU R basic graphic utilities for visualization of genomic data
r-bioc-bsgenome (1.30.0-1) [universe]
BioConductor infrastructure for Biostrings-based genome data packages
r-bioc-cummerbund (2.4.1-1) [universe]
tool for analysis of Cufflinks RNA-Seq output
r-bioc-edger (3.4.2+dfsg-2) [universe]
Empirical analysis of digital gene expression data in R
r-bioc-genomicfeatures (1.14.2-1) [universe]
GNU R tools for making and manipulating transcript centric annotations
r-bioc-genomicranges (1.14.3-1) [universe]
BioConductor representation and manipulation of genomic intervals
r-bioc-graph (1.38.3-1) [universe]
handle graph data structures for BioConductor
r-bioc-gviz (1.6.0-1) [universe]
Plotting data and annotation information along genomic coordinates
r-bioc-hypergraph (1.32.0-1) [universe]
BioConductor hypergraph data structures
r-bioc-iranges (1.20.4-1) [universe]
GNU R low-level containers for storing sets of integer ranges
r-bioc-limma (3.16.7~dfsg-1) [universe]
linear models for microarray data
r-bioc-makecdfenv (1.36.0-1) [universe]
BioConductor CDF Environment Maker
r-bioc-preprocesscore (1.22.0-1) [universe]
BioConductor collection of pre-processing functions
r-bioc-qvalue (1.34.0+dfsg-1) [universe]
GNU R package for Q-value estimation for FDR control
r-bioc-rsamtools (1.14.2-1) [universe]
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
r-bioc-rtracklayer (1.22.0-1) [universe]
GNU R interface to genome browsers and their annotation tracks
r-bioc-shortread (1.20.0-1) [universe]
GNU R classes and methods for high-throughput short-read sequencing data
r-bioc-xvector (0.2.0-2) [universe]
BioConductor representation and manpulation of external sequences
r-cran-amelia (1.7.1-2) [universe]
GNU R package supporting multiple imputation of missing data
r-cran-amore (0.2-12-3) [universe]
GNU R: A MORE flexible neural network package
r-cran-base64enc (0.1-1-2) [universe]
GNU R package that provides tools for base64 encoding
r-cran-boolnet (1.61-2) [universe]
tools for assembling, analyzing and visualizing Boolean networks
r-cran-class (7.3-9-1) [universe]
GNU R package for classification
r-cran-deal (1:1.2-37-1) [universe]
Learning Bayesian Networks with Mixed Variables
r-cran-deldir (0.0-22-1) [universe]
GNU R Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
r-cran-deoptimr (1.0-1-1) [universe]
GNU R package for Diffential Evolution in pure R
r-cran-diagnosismed (0.2.3-3) [universe]
medical diagnostic test accuracy analysis toolkit
r-cran-dichromat (2.0.0-2) [universe]
Color schemes for dichromats
r-cran-digest (0.6.4-1) [universe]
GNU R package for 'hash digest' of R data structures
r-cran-domc (1.3.2-1) [universe]
GNU R parallel excution backend for %dopar% using multicore
r-cran-dosefinding (0.9-9-1) [universe]
Planning and Analyzing Dose Finding experiments
r-cran-dosnow (1.0.9-1) [universe]
GNU R parallel excution backend for %dopar% using snow
r-cran-downloader (0.3-1) [universe]
GNU R package for downloading files over http and https
r-cran-epi (1.1.49-1) [universe]
GNU R epidemiological analysis
r-cran-epicalc (2.15.1.0-1) [universe]
GNU R Epidemiological calculator
r-cran-epir (0.9-54-1) [universe]
GNU R Functions for analysing epidemiological data
r-cran-epitools (1:0.5-7-1build1) [universe]
GNU R Epidemiology Tools for Data and Graphics
r-cran-erm (0.14-0-6build1) [universe]
GNU R package for 'extended Rasch modelling'
r-cran-evaluate (0.5.1-1) [universe]
GNU R parsing and evaluation tools
r-cran-evd (2.3-0-1) [universe]
GNU R Functions for extreme value distributions
r-cran-fastcluster (1.1.11-1) [universe]
Fast hierarchical clustering routines for GNU R
r-cran-foreach (1.4.1-1) [universe]
GNU R foreach looping support
r-cran-formula (1.1-1-1) [universe]
GNU R package for extended model formulas
r-cran-g.data (2.3-1build1) [universe]
GNU R package for delayed-data
r-cran-gam (1.08-1) [universe]
Generalized Additive Models for R
r-cran-gbm (2.1-1) [universe]
GNU R package "Generalized Boosted Regression Models"
r-cran-genabel (1.7-6-1) [universe]
GNU R package for genome-wide SNP association analysis
r-cran-ggplot2 (0.9.3.1-1) [universe]
implementation of the Grammar of Graphics
r-cran-gss (2.1-0-1) [universe]
GNU R package for multivariate estimation using smoothing splines
r-cran-gtable (0.1.2-1.1) [universe]
Arrange grobs in tables
r-cran-hwriter (1.3-1) [universe]
HTML Writer - Outputs R objects in HTML format
r-cran-inline (0.3.13-1) [universe]
GNU R package to inline C, C++, Fortran functions from R
r-cran-int64 (1.1.2-2) [universe]
GNU R package for 64 bit integer types
r-cran-iterators (1.0.6-2) [universe]
GNU R iterator support for vectors, lists and other containers
r-cran-labeling (0.1-2) [universe]
GNU R Axis Labeling optimization
r-cran-lhs (0.10-1) [universe]
GNU R package "lhs: Latin Hypercube Samples"
r-cran-maldiquant (1.9-1) [universe]
GNU R package for quantitative analysis of mass spectrometry data
r-cran-maldiquantforeign (0.5.1-1) [universe]
GNU R package providing import/export routines for MALDIquant
r-cran-mass (7.3-29-1) [universe]
GNU R package of Venables and Ripley's MASS
r-cran-medadherence (1.03-1) [universe]
GNU R Medication Adherence: Commonly Used Definitions
r-cran-memoise (0.1-2) [universe]
Memoise functions
r-cran-mfilter (0.1.3-1) [universe]
GNU R package providing miscellaneous time series filters
r-cran-minqa (1.2.3-1) [universe]
GNU R package for quadratic optimisation without derivatives
r-cran-multicore (0.1-7-2) [universe]
GNU R parallel processing on multi-core or multi-cpu machines
r-cran-munsell (0.4.2-1) [universe]
Munsell colour system
r-cran-nnet (7.3-7-1) [universe]
GNU R package for feed-forward neural networks
r-cran-numderiv (2012.9-1-1) [universe]
GNU R package for accurate numerical derivatives
r-cran-permute (0.8-0-1) [universe]
R functions for generating restricted permutations of data
r-cran-plyr (1.8-1build1) [universe]
Tools for splitting, applying and combining data
r-cran-polyclip (1.2-0-1) [universe]
GNU R Polygon Clipping
r-cran-polycub (0.4-1-1) [universe]
GNU R Cubature over Polygonal Domains
r-cran-proto (0.3-10-1build1) [universe]
Prototype object-based programming
r-cran-pscl (1.04.4-2) [universe]
GNU R package for discrete data models
r-cran-pvclust (1.2-2-2) [universe]
Hierarchical Clustering with P-Values via Multiscale Bootstrap
r-cran-pwt (7.1.1-1) [universe]
GNU R package for the Penn World Tables
r-cran-raschsampler (0.8-6-1) [universe]
GNU R package for sampling binary matrices with fixed margins
r-cran-rcpparmadillo (0.4.000.2-2) [universe]
GNU R package for Armadillo C++ linear algebra library
r-cran-rcppeigen (0.3.2.0.2-2) [universe]
GNU R package for Eigen templated linear algebra
r-cran-rcurl (1.95-4.1-1) [universe]
GNU R General network (HTTP/FTP/...) client interface
r-cran-readbrukerflexdata (1.7-1) [universe]
GNU R package to read Bruker Daltonics *flex format files
r-cran-readmzxmldata (2.7-1) [universe]
GNU R package to read mass spectrometry data in mzXML format
r-cran-reshape (0.8.4-2build1) [universe]
Flexibly reshape data
r-cran-reshape2 (1.2.2-1) [universe]
Flexibly reshape data: a reboot of the reshape package
r-cran-rjags (3.10-1) [universe]
R interface to the JAGS Bayesian statistics package
r-cran-rjson (0.2.13-1) [universe]
GNU R package for converting between R and JSON objects
r-cran-rms (4.1-1-1) [universe]
GNU R regression modeling strategies by Frank Harrell
r-cran-rniftilib (0.0-32-1) [universe]
GNU/R interface to NIFTICLIB
r-cran-rsclient (0.7-2.0-1) [universe]
GNU R package providing an Rserve client
r-cran-rsqlite (0.11.2-1build1) [universe]
Database Interface R driver for SQLite
r-cran-rsymphony (0.1-17-1) [universe]
GNU R interface to the SYMPHONY MILP solver
r-cran-scales (0.2.3-1) [universe]
Scale functions for graphics
r-cran-scatterplot3d (0.3-33-2build1) [universe]
GNU R package for Visualizing Multivariate Data
r-cran-slam (0.1-31-1) [universe]
GNU R sparse lighweight arrays and matrices package
r-cran-sparsem (1.03-1) [universe]
GNU R package for basic linear algebra for sparse matrices
r-cran-spatial (7.3-7-1) [universe]
GNU R package for spatial statistics
r-cran-spatstat (1.35-0-1) [universe]
GNU R Spatial Point Pattern analysis, model-fitting, simulation, tests
r-cran-stabledist (0.6-6-1) [universe]
GNU R package for stable distribution functions
r-cran-statmod (1.4.18-1) [universe]
GNU R package providing various statistical modeling functions
r-cran-stringr (0.6.2-1) [universe]
Make it easier to work with strings
r-cran-tcltk2 (1.2-9-1) [universe]
GNU R package for Tcl/Tk additions
r-cran-teachingdemos (2.9-1) [universe]
GNU R Demonstrations for teaching and learning
r-cran-tensor (1.5-1) [universe]
GNU R Tensor product of arrays
r-cran-testthat (0.7.1-1) [universe]
GNU R testsuite
r-cran-tgp (2.4-9-1) [universe]
GNU R package "tgp: Bayesian treed Gaussian process models"
r-cran-th.data (1.0-3-1) [universe]
GNU R package for datasets by Torsten Hothorn
r-cran-vegan (2.0-7-1build1) [universe]
Community Ecology Package for R
r-cran-wdi (2.4-1) [universe]
GNU R package for accessing the World Development Indicators
r-cran-xts (0.9-7-1) [universe]
GNU R package for time series analysis -- xts
r-other-mott-happy.hbrem (2.4-1) [universe]
GNU R package for fine-mapping complex diseases
r-other-rot (1.2-2) [universe]
GNU R package of few tools needed by OpenTURNS
r-revolution-revobase (3.0.0-1ubuntu3) [multiverse]
REvolution Computing R Math Kernel Libraries support
revolution-mkl (3.0.0-1ubuntu1) [multiverse]
REvolution Computing high-performance numeric libraries for R
revolution-r (3.0.0-1ubuntu1) [multiverse]
REvolution Computing R for Ubuntu