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Software Packages in "utopic", Subsection science

3depict (0.0.16-2.1) [universe]
visualisation and analysis for single valued point data
abacas (1.3.1-2) [universe]
Algorithm Based Automatic Contiguation of Assembled Sequences
abinit (5.3.4.dfsg-4) [universe]
package for electronic structure calculations
abinit-doc (5.3.4.dfsg-4) [universe]
documentation for abinit package for electronic structure calculations
abyss (1.3.6-1build1) [multiverse]
de novo, parallel, sequence assembler for short reads
acedb-other (4.9.39+dfsg.01-5) [universe]
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.01-5) [universe]
multiple sequence alignment editor
acedb-other-dotter (4.9.39+dfsg.01-5) [universe]
visualisation of sequence similarity
aces3 (3.0.6-7.1) [universe]
Advanced Concepts in Electronic Structure III
achilles (2-8) [universe]
An artificial life and evolution simulator
adun.app (0.81-6build1) [universe]
Molecular Simulator for GNUstep
aeskulap (0.2.2b1-13) [universe]
medical image viewer and DICOM network client
aevol (4.3-1) [universe]
digital genetics model to run Evolution Experiments in silico
aghermann (1.0.1-2) [universe]
Sleep-research experiment manager
algotutor (0.8.6-1) [universe]
program for observing the intermediate steps of algorithm
alien-hunter (1.7-3) [universe]
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.3.1-2build1) [universe]
program to perform phylogeny-based association and localization analysis
altree-examples (1.3.1-2build1) [universe]
example files for ALTree
amap-align (2.2-4) [universe]
Protein multiple alignment by sequence annealing
ampliconnoise (1.29-2) [universe]
removal of noise from 454 sequenced PCR amplicons
anfo (0.98-4) [universe]
Short Read Aligner/Mapper from MPG
ants (1.9.2+svn680.dfsg-4) [universe]
advanced normalization tools for brain and image analysis
apbs (1.4-1) [universe]
Adaptive Poisson Boltzmann Solver
aragorn (1.2.36-4) [universe]
tRNA and tmRNA detection in nucleotide sequences
arb (5.5-5ubuntu1) [multiverse]
Integrated package for sequence database handling and analysis
arb-common (5.5-5ubuntu1) [multiverse]
Integrated package for sequence database handling and analysis (data+scripts)
arden (1.0-1) [universe]
specificity control for read alignments using an artificial reference
ask (1.0.1-1ubuntu1) [universe]
Adaptive Sampling Kit for big experimental spaces
astrometry.net (0.46-0ubuntu2) [universe]
Astrometry plate solver
astronomical-almanac (5.6-4) [universe]
astronomical almanac - calculate planet and star positions
autodock (4.2.5.1-6) [universe]
analysis of ligand binding to protein structure
autodock-getdata (4.2.5.1-6) [universe]
instructions for getData to collect compounds
autodock-test (4.2.5.1-6) [universe]
test files for AutoDock
autodock-vina (1.1.2-3build1) [universe]
docking of small molecules to proteins
autodocktools (1.5.7~rc1+cvs.20140424-1) [multiverse]
GUI to help set up, launch and analyze AutoDock dockings
autogrid (4.2.5.1-6) [universe]
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.5.1-6) [universe]
test files for AutoGrid
avce00 (2.0.0-2) [universe]
Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.
avogadro (1.1.1-0ubuntu3) [universe]
Molecular Graphics and Modelling System
avogadro-data (1.1.1-0ubuntu3) [universe]
Molecular Graphics and Modelling System (Data Files)
aweather (0.8.1-1ubuntu2) [universe]
Advanced Weather Monitoring Program
ballview (1.4.2+20140406-1) [universe]
free molecular modeling and molecular graphics tool
bamtools (2.3.0+dfsg-2) [universe]
toolkit for manipulating BAM (genome alignment) files
bauble (0.9.7-2) [universe]
biodiversity collection manager software application
beast-mcmc (1.7.5-1) [multiverse]
Bayesian MCMC phylogenetic inference
bedtools (2.20.1-1) [universe]
suite of utilities for comparing genomic features
bedtools-test (2.20.1-1) [universe]
test data for the bedtools package
bibus (1.5.2-3) [universe]
bibliographic database
biogenesis (0.8-2) [universe]
artificial life program that simulates evolution of organisms
biomaj (1.2.3-3) [universe]
biological data-bank updater
biomaj-properties (1.2.3-3) [universe]
biological data-bank updater - example properties files
biomaj-watcher (1.2.1-1) [multiverse]
biological data-bank updater - web interface
bioperl (1.6.924-1) [universe]
Perl tools for computational molecular biology
bioperl-run (1.6.9-2) [universe]
BioPerl wrappers: scripts
biosig-tools (1.3.0-2build2) [universe]
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-3) [universe]
utilities for biological sequence analysis
bist (0.5.2-1) [universe]
chemical drawing tool
bkchem (0.13.0-4) [universe]
Chemical structures editor
blast2 (1:2.2.26.20120620-7) [universe]
Basic Local Alignment Search Tool
blimps-utils (3.9-1) [multiverse]
blocks database improved searcher
blinken (4:4.14.0-0ubuntu1) [universe]
KDE version of the Simon electronic memory game
bodr (10-1) [universe]
Blue Obelisk Data Repository
boinc-app-milkyway (0.18d-4) [universe]
Milkyway@home application for the BOINC client
boinc-app-seti (7.28~svn2408-1) [universe]
SETI@home application for the BOINC client
boinc-app-seti-graphics (7.28~svn2408-1) [universe]
SETI@home application for the BOINC client (with graphics)
boolector (1.5.118.6b56be4.121013-1) [universe]
SMT solver for bit-vectors and arrays
bowtie (1.0.0-6) [universe]
Ultrafast memory-efficient short read aligner
bowtie-examples (1.0.0-6) [universe]
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.1.0-2) [universe]
ultrafast memory-efficient short read aligner
bowtie2-examples (2.1.0-2) [universe]
Examples for bowtie2
boxshade (3.3.1-8) [universe]
Pretty-printing of multiple sequence alignments
bppphyview (0.3.0-1) [universe]
Bio++ Phylogenetic Viewer
bppsuite (0.8.0-1+build1) [universe]
Bio++ program suite
bwa (0.7.9a-1) [universe]
Burrows-Wheeler Aligner
cain (1.9-7) [universe]
simulations of chemical reactions
cain-examples (1.9-7) [universe]
simulations of chemical reactions
cain-solvers (1.9-7) [universe]
simulations of chemical reactions
camitk-actionstatemachine (3.3.2-1) [universe]
pipeline replay application for the CamiTK library
camitk-imp (3.3.2-1) [universe]
workbench application for the CamiTK library
caret (5.6.4~dfsg.1-3ubuntu3) [universe]
Computerized Anatomical Reconstruction and Editing Toolkit
cassiopee (1.0.1+dfsg-3) [universe]
index and search tool in genomic sequences
cba (0.3.6-4.1) [universe]
Continuous Beam Analysis
cbflib-bin (0.9.2.2-1) [universe]
utilities to manipulate CBF files
cbmc (4.5-2ubuntu2) [universe]
bounded model checker for C and C++ programs
cclib (1.1-1) [universe]
Parsers and algorithms for computational chemistry
cclib-data (1.1-1) [multiverse]
Parsers and algorithms for computational chemistry (data files)
cd-hit (4.6.1-2012-08-27-2) [universe]
suite of programs designed to quickly group sequences
cdbfasta (0.99-20100722-1) [universe]
Constant DataBase indexing and retrieval tools for multi-FASTA files
celestia-common (1.6.1+dfsg-3) [universe]
datafiles for Celestia, a real-time visual space simulation
celestia-common-nonfree (1.6.1-1) [multiverse]
Non-free datafiles for Celestia, a real-time visual space simulation
celestia-glut (1.6.1+dfsg-3) [universe]
real-time visual space simulation (GLUT frontend)
cernlib (20061220+dfsg3-4) [universe]
CERNLIB data analysis suite - general use metapackage
cernlib-core (20061220+dfsg3-4) [universe]
CERNLIB data analysis suite - main libraries and programs
cernlib-core-dev (20061220+dfsg3-4) [universe]
CERNLIB data analysis suite - core development files
cernlib-extras (20061220+dfsg3-4) [universe]
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-3) [universe]
CERNLIB Monte Carlo libraries
cgns-convert (3.1.4.2-2) [universe]
CFD General Notation System - Conversion tools
chemical-structures (2.2.dfsg.0-11) [universe]
set of molecular structures in open formats
chemtool (1.6.14-1) [universe]
chemical structures drawing program
chimeraslayer (20101212+dfsg-1) [universe]
detects likely chimeras in PCR amplified DNA
choreonoid (1.1.0+dfsg-6.1build1) [universe]
Integrated robotics GUI environment
choreonoid-data (1.1.0+dfsg-6.1build1) [universe]
Integrated robotics GUI environment - shared data
choreonoid-plugins-base (1.1.0+dfsg-6.1build1) [universe]
Integrated robotics GUI environment - core plug-ins
circos (0.66-1) [universe]
plotter for visualizing data
circos-tools (0.18-1) [universe]
plotter for visualizing data - helper utilities
clearcut (1.0.9-1) [universe]
extremely efficient phylogenetic tree reconstruction
clinica (0.3.0-1) [universe]
Simple medical records manager
clinica-common (0.3.0-1) [universe]
Simple medical records manager (architecture independent files)
clinica-dev (0.3.0-1) [universe]
Simple medical records manager (development files)
clinica-plugins (0.3.0-1) [universe]
Simple medical records manager (plugins)
clonalframe (1.2-3) [universe]
inference of bacterial microevolution using multilocus sequence data
clustalo (1.2.1-1) [universe]
General purpose multiple sequence alignment program for proteins
clustalw (2.1+lgpl-4) [universe]
global multiple nucleotide or peptide sequence alignment
clustalw-mpi (0.15-3build2) [multiverse]
MPI-distributed global sequence alignment with ClustalW
clustalx (2.1+lgpl-2) [multiverse]
Multiple alignment of nucleic acid and protein sequences (graphical interface)
cluster3 (1.52-2) [multiverse]
Reimplementation of the Eisen-clustering software
cmtk (3.2.1-1) [universe]
Computational Morphometry Toolkit
cnrun (1.1.14-1ubuntu1) [universe]
NeuroML-capable neuronal network simulator
code-aster-gui (1.13.1-2) [universe]
Graphical user interface for Code_Aster - client
code-aster-run (1.13.1-2) [universe]
Graphical user interface for Code_Aster - server
code-saturne (3.3.1-2) [universe]
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (3.3.1-2) [universe]
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (3.3.1-2) [universe]
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-include (3.3.1-2) [universe]
General purpose Computational Fluid Dynamics (CFD) software - includes
coinor-cbc (2.8.7-1ubuntu2) [universe]
Coin-or branch-and-cut mixed integer programming solver
coinor-clp (1.15.5-1ubuntu3) [universe]
Coin-or linear programming solver
coinor-csdp (6.1.1-1) [universe]
A software package for semidefinite programming
coinor-libcbc3 (2.8.7-1ubuntu2) [universe]
Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl1 (0.58.4-2ubuntu2) [universe]
COIN-OR Cut Generation Library
coinor-libclp1 (1.15.5-1ubuntu3) [universe]
Coin-or linear programming solver (shared libraries)
coinor-libcoinutils3 (2.9.10-1ubuntu2) [universe]
Coin-or collection of utility classes (binaries and libraries)
coinor-libdylp0 (1.6.0-1.1ubuntu2) [universe]
Linear programming solver using the dynamic simplex algorithm
coinor-libflopc++0 (1.0.6-3.1ubuntu1) [universe]
Formulation of Linear Optimization Problems in C++
coinor-libosi1 (0.106.4-1ubuntu5) [universe]
COIN-OR Open Solver Interface
coinor-libsymphony3 (5.5.6-1ubuntu2) [universe]
COIN-OR solver for mixed-integer linear programs (shared libraries)
coinor-libvol0 (1.1.7-1) [universe]
Coin-or linear programming solver
coinor-symphony (5.5.6-1ubuntu2) [universe]
COIN-OR solver for mixed-integer linear programs
concavity (0.1-2) [universe]
predictor of protein ligand binding sites from structure and conservation
conservation-code (20110309.0-3) [universe]
protein sequence conservation scoring tool
cp2k (2.5.1-2build1) [universe]
Ab Initio Molecular Dynamics
cp2k-data (2.5.1-2build1) [universe]
Ab Initio Molecular Dynamics (data files)
cpl-plugin-amber (4.3.1+dfsg-1) [universe]
ESO data reduction pipeline for AMBER
cpl-plugin-amber-calib (4.3.1+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for AMBER
cpl-plugin-fors (4.12.12+dfsg-3) [universe]
ESO data reduction pipeline for FORS
cpl-plugin-fors-calib (4.12.12+dfsg-3) [universe]
ESO data reduction pipeline calibration data downloader for FORS2
cpl-plugin-giraf (2.12.1+dfsg-1) [universe]
ESO data reduction pipeline for GIRAFFE
cpl-plugin-giraf-calib (2.12.1+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for GIRAFFE
cpl-plugin-hawki (1.8.14+dfsg-2) [universe]
ESO data reduction pipeline for HAWK-I
cpl-plugin-hawki-calib (1.8.14+dfsg-2) [universe]
ESO data reduction pipeline calibration data downloader for HAWK-I
cpl-plugin-kmos (1.3.4+dfsg-1) [universe]
ESO data reduction pipeline for KMOS
cpl-plugin-kmos-calib (1.3.4+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for KMOS
cpl-plugin-sinfo (2.5.2+dfsg-2) [universe]
ESO data reduction pipeline SINFONI
cpl-plugin-sinfo-calib (2.5.2+dfsg-2) [universe]
ESO data reduction pipeline calibration data downloader for SINFONI
cpl-plugin-uves (5.4.3+dfsg-1) [universe]
ESO data reduction pipeline for UVES
cpl-plugin-uves-calib (5.4.3+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for UVES
cpl-plugin-vimos (2.9.15+dfsg-1) [universe]
ESO data reduction pipeline for VIMOS
cpl-plugin-vimos-calib (2.9.15+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for VIMOS
cpl-plugin-xshoo (2.5.2+dfsg-1) [universe]
ESO data reduction pipeline for XSHOOTER
cpl-plugin-xshoo-calib (2.5.2+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for XSHOOTER
critterding (1.0-beta12.1-1.2) [universe]
Evolving Artificial Life
ctsim (5.2.0-1.1) [universe]
Computed tomography simulator
ctsim-help (5.2.0-1.1) [universe]
Online help file for CTSim
cufflinks (2.2.1-1) [multiverse]
Transcript assembly, differential expression and regulation for RNA-Seq
dans-gdal-scripts (0.23-2) [universe]
GDAL contributed tools by Geographic Information Network of Alaska
dcmtk (3.6.0-15) [universe]
OFFIS DICOM toolkit command line utilities
dialign (2.2.1-7) [universe]
Segment-based multiple sequence alignment
dialign-tx (1.0.2-7) [universe]
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-7) [universe]
Segment-based multiple sequence alignment (data files)
dicomnifti (2.31.1-1) [universe]
converts DICOM files into the NIfTI format
dicompyler (0.4.1-1-2) [universe]
radiation therapy research platform
diet-agent (2.8.0-1build3) [universe]
DIET grid middleware - agent
dimbl (0.12-2) [universe]
Distributed Memory Based Learner
discosnp (1.2.2-1) [universe]
discovering Single Nucleotide Polymorphism from raw set(s) of reads
disulfinder (1.2.11-3) [universe]
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-3) [universe]
data files for predictor of disulfide bonds in proteins
dnaclust (3-2build1) [universe]
tool for clustering millions of short DNA sequences
doris (4.06~beta2+dfsg-3) [multiverse]
Delft object-oriented radar interferometric software
dozzaqueux (3.35-2) [universe]
simulator for chemical mixtures
dozzaqueux-data (3.35-2) [universe]
databases for chemical mixtures
drawxtl (5.5-3) [universe]
crystal structure viewer
drslib (0.3.0a3-5) [universe]
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.1) [universe]
Software for Semidefinite Programming
dssp (2.2.1-2) [universe]
protein secondary structure assignment based on 3D structure
dx (1:4.4.4-7) [universe]
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.4.0-1) [universe]
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-2) [universe]
A program to read/write Arcinfo compressed E00 files
easychem (0.6-8) [universe]
Draw high-quality molecules and 2D chemical formulas
ecaccess (4.0.1-1) [universe]
clients to access ECMWF facilities
edfbrowser (1.53-1) [universe]
viewer for biosignal storage files such as bdf and edf
edtsurf (0.2009-3) [universe]
triangulated mesh surfaces for protein structures
eficas (6.4.0-1-1.1) [universe]
Graphical editor for Code Aster command files
elastix (4.5-4) [universe]
toolbox for rigid and nonrigid registration of images
elk-lapw (2.2.10-2) [universe]
All-Electron Density-Functional Electronic Structure Code
elki (0.6.0-2) [universe]
Data mining algorithm development framework
elmer (6.1.0.svn.5396.dfsg2-4ubuntu1) [universe]
finite element multiphysics suite - binaries
elmer-common (6.1.0.svn.5396.dfsg2-4ubuntu1) [universe]
finite element multiphysics suite - architecture-independent files
embassy-domainatrix (0.1.650-1) [universe]
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.650-1) [universe]
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.650-1) [universe]
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.69.650-2) [multiverse]
EMBOSS conversions of the programs in the phylip package
emboss (6.6.0+dfsg-1) [universe]
european molecular biology open software suite
emboss-data (6.6.0+dfsg-1) [universe]
data files for the EMBOSS package
emboss-explorer (2.2.0-8) [universe]
web-based GUI to EMBOSS
engauge-digitizer (5.2-1) [universe]
interactively extracts numbers from bitmap graphs or maps
ent (1.1debian-4) [universe]
pseudorandom number sequence test program
epigrass (2.4.0-2) [universe]
scientific tool for simulations and scenario analysis in network epidemiology
epsilon-bin (0.9.2-2) [universe]
Library for wavelet image compression - tools
ergo (3.4.0-1) [universe]
Quantum chemistry program for large-scale calculations
eso-midas (13.09pl1.3-1) [universe]
European Southern Observatory Munich Image Data Analysis System
esorex (3.10.2-1) [universe]
Execution Tool for European Southern Observatory pipelines
esys-particle (2.2.u2-2ubuntu5) [universe]
Software for particle-based numerical modelling. MPI version.
etsf-io (1.0.3-4build1) [universe]
Binary tools to check, merge and read ETSF files
exonerate (2.2.0-6) [universe]
generic tool for pairwise sequence comparison
expeyes (3.1.5-2) [universe]
hardware & software framework for developing science experiments
expeyes-clib (3.1.5-2) [universe]
hardware & software framework for developing science experiments
extrema (4.4.5.dfsg-3ubuntu2) [universe]
powerful visualization and data analysis tool
fastdnaml (1.2.2-10) [universe]
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix95-3) [universe]
faster version of pedigree programs of Linkage
fastlink-doc (4.1P-fix95-3) [universe]
Some papers about fastlink
fastqc (0.11.2+dfsg-1) [universe]
quality control for high throughput sequence data
fasttree (2.1.7-1) [universe]
phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit (0.0.14-1) [universe]
FASTQ/A short nucleotide reads pre-processing tools
fcc (2.8-1) [universe]
Script to compile C/C++ programs and link to Fortran libraries
feedgnuplot (1.34-1) [universe]
Pipe-oriented frontend to Gnuplot
feel++-apps (1:0.98.0-final-3) [universe]
A library for the finite element method
ffindex (0.9.9.3-1) [universe]
simple index/database for huge amounts of small files
figtree (1.4-2) [universe]
graphical phylogenetic tree viewer
filo (1.1+2011123001.1) [universe]
FILe and stream Operations
fitsverify (4.17-1) [universe]
FITS File Format-Verification Tool
fityk (1.2.1-0.1ubuntu2) [universe]
general-purpose nonlinear curve fitting and data analysis
flexbar (2.40-2) [universe]
flexible barcode and adapter removal for sequencing platforms
fractalnow (0.8.1-1build1) [universe]
Fast, advanced fractal generator
(1.4.77-1.1) [universe]
Free42 is a re-implementation of the HP-42S calculator
freecad (0.14.3702+dfsg-1) [universe]
Extensible Open Source CAx program (alpha)
freecontact (1.0.21-3build1) [universe]
fast protein contact predictor
freediams (0.9.0-2) [universe]
pharmaceutical drug prescription and interaction manager
freefoam (0.1.0+dfsg-1.1) [universe]
programs for Computational Fluid Dynamics (CFD)
freemedforms-common-resources (0.9.0-2) [universe]
common data for the FreeMedForms project applications
freemedforms-emr (0.9.0-2) [universe]
electronic medical record manager
freemedforms-emr-resources (0.9.0-2) [universe]
data for the FreeMedForms EMR
freemedforms-freedata (0.9.0-2) [universe]
free extra-data for the FreeMedForms project
freemedforms-i18n (0.9.0-2) [universe]
translations of the FreeMedForms project
freemedforms-libs (0.9.0-2) [universe]
common libs for the FreeMedForms project
freemedforms-project (0.9.0-2) [universe]
FreeMedForms project
freemedforms-theme (0.9.0-2) [universe]
theme for the FreeMedForms project
frog (0.12.17-7.1build1) [universe]
tagger and parser for Dutch language (runtime)
frogdata (0.4-1) [universe]
Data files for Frog
fsl (5.0.7-4) [multiverse]
transitional dummy package
fsl
virtual package provided by fsl-5.0-core
fsl-5.0-core (5.0.7-4) [multiverse]
analysis tools for FMRI, MRI and DTI brain imaging
fsl-core (5.0.7-4) [multiverse]
metapackage for the latest version of FSL
fslview (4.0.1-4) [universe]
viewer for (f)MRI and DTI data
ftools-fv (5.3+dfsg-5) [universe]
Tool for viewing and editing FITS format files
ftools-pow (5.3+dfsg-5) [universe]
Curve plotting and image display interface tool
funtools (1.4.4+dfsg-1) [universe]
Minimal buy-in FITS utility package
fxt-tools (0.2.14-3ubuntu1) [universe]
Multithreaded tracing library
g3data (1:1.5.3-2.1) [universe]
extract data from scanned graphs
gabedit (2.4.8-1) [universe]
graphical user interface to Ab Initio packages
gamgi (0.17-1) [universe]
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.17-1) [universe]
General Atomistic Modelling Graphic Interface (data)
garlic (1.6-1.1) [universe]
A visualization program for biomolecules
gausssum (2.2.6.1-1) [universe]
parse and display Gaussian, GAMESS, and etc's output
gbrowse (2.54+dfsg-3build1) [universe]
GMOD Generic Genome Browser
gbrowse-calign (2.54+dfsg-3build1) [universe]
CAlign helper
gbrowse-data (2.54+dfsg-3build1) [universe]
Sample data to use GBrowse
gchempaint (0.14.8-1ubuntu1) [universe]
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.14.8-1ubuntu1) [universe]
lightweight crystal structures visualizer
gcu-bin (0.14.8-1ubuntu1) [universe]
GNOME chemistry utils (helper applications)
gcu-plugin (0.14.8-1ubuntu1) [universe]
GNOME chemistry utils (browser plugin)
gcx (1.3-1.1) [universe]
astronomical image processing and photometry gtk+ application
gdal-bin (1.10.1+dfsg-8ubuntu1) [universe]
Geospatial Data Abstraction Library - Utility programs
gdis (0.90-5) [universe]
molecular and crystal model viewer
gdis-data (0.90-5) [universe]
molecular and crystal model viewer (data files)
gdpc (2.2.5-3ubuntu1) [universe]
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-3ubuntu1) [universe]
example files for the gdpc program
geant321 (1:3.21.14.dfsg-11) [universe]
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-11) [universe]
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-9ubuntu1) [universe]
Periodic Table viewer
genometools (1.5.3-2) [universe]
versatile genome analysis toolkit
genometools-common (1.5.3-2) [universe]
shared data files for GenomeTools
gentle (1.9+cvs20100605+dfsg1-3ubuntu1) [multiverse]
suite to plan genetic cloning
geographiclib-tools (1.35-2ubuntu1) [universe]
A C++ library to solve some geodesic problems -- tools
geotiff-bin (1.4.0-1ubuntu2) [universe]
the GeoTIFF library -- tools
gerris-mpi (20131206+dfsg-1) [universe]
Fluid Flow Solver
getdata (0.2-1) [universe]
management of external databases
gff2aplot (2.0-7) [universe]
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-4) [universe]
produces PostScript graphical output from GFF-files
ghkl (4.0.3-4ubuntu1) [universe]
diffractometer computation control application
ginkgocadx (3.6.1.1367.34+dfsg-1) [universe]
Medical Imaging Software and complete DICOM Viewer
glam2 (1064-3) [universe]
gapped protein motifs from unaligned sequences
gmap (2012-06-12-1ubuntu1) [multiverse]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (4.5.12-1) [universe]
Generic Mapping Tools
gmt-doc-pdf (4.5.12-1) [universe]
PDF docs for GMT, the Generic Mapping Tools
gmt-tutorial (3.4-1.1) [universe]
Data files needed to reproduce the tutorial examples of GMT
gmt-tutorial-pdf (4.5.12-1) [universe]
Tutorial for GMT, the Generic Mapping Tools (PDF)
gnuhealth (2.6.0-0ubuntu1) [universe]
Electronic Medical Record and Hospital Information System
gnuhealth-client (2.6.0-0ubuntu1) [universe]
Electronic Medical Record and Hospital Information System - Client
gnuhealth-server (2.6.0-0ubuntu1) [universe]
Electronic Medical Record and Hospital Information System - Server
gofigure2 (0.9.0-3build1) [universe]
Tool for visualizing, processing and analysing of bioimages
gperiodic (2.0.10-7) [universe]
periodic table application
gpiv (0.6.1-2.2) [universe]
GUI program for Particle Image Velocimetry
gpiv-mpi (0.6.1-2.2) [universe]
GUI program for Particle Image Velocimetry - MPI version
gpivtools (0.6.0-3build2) [universe]
command line programs for Particle Image Velocimetry
gpivtools-mpi (0.6.0-3build2) [universe]
command line programs for Particle Image Velocimetry - MPI version
gpx (0~20140109+git3570fc9-1ubuntu1) [universe]
Gcode to x3g conversion post processor
gpx2shp (0.71.0-1) [universe]
convert GPS or GPX file to ESRI Shape file
gr-fcdproplus (0.0.1.2.1edbe52-2) [universe]
Funcube Dongle Pro Plus controller for GNU Radio
grads (2:2.0.2-3) [universe]
Grid Analysis and Display System for earth science data
grass (6.4.3-3) [universe]
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (6.4.3-3) [universe]
GRASS GIS core components
grass-doc (6.4.3-3) [universe]
GRASS GIS user documentation
grass-gui (6.4.3-3) [universe]
GRASS GIS graphical user interfaces
gri (2.12.23-8) [universe]
a language for scientific illustration
gri-el (2.12.23-8) [universe]
Emacs major-mode for gri, a language for scientific graphics
grinder (0.5.3-3) [universe]
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (4.6.6-1) [universe]
Molecular dynamics simulator, with building and analysis tools
gromacs-data (4.6.6-1) [universe]
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (4.6.6-1) [universe]
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (4.6.6-1) [universe]
Molecular dynamics sim, binaries for OpenMPI parallelization
gvb (1.2.1-1.1) [universe]
visual simulator of 1 and 2-dimensional vibrations
gwyddion (2.36-1ubuntu1) [universe]
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.36-1ubuntu1) [universe]
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.36-1ubuntu1) [universe]
plugins for Gwyddion SPM analysis tool
gyoto (0.1.0-2ubuntu2) [universe]
General relativistic ray-tracing
h5utils (1.12.1-2) [universe]
HDF5 files visualization tools
harminv (1.3.1-10) [universe]
extraction of complex frequencies and amplitudes from time series
hdf5-helpers (1.8.12+docs-1.1ubuntu1) [universe]
Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools (1.8.12+docs-1.1ubuntu1) [universe]
Hierarchical Data Format 5 (HDF5) - Runtime tools
herwig++ (2.6.0-1) [universe]
Multi-purpose event generator for high energy physics
herwig++-data (2.6.0-1) [universe]
Herwig++ Data
herwig++-dev (2.6.0-1) [universe]
Herwig++ development files
hhsuite (2.0.16-1ubuntu1) [universe]
sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data (2.0.16-1ubuntu1) [universe]
sensitive protein sequence searching based on HMM-HMM alignment (data)
hidrd (0.2.0-11) [universe]
tools for parsing and generating HID report descriptors
hmmer (3.1b1-3) [universe]
profile hidden Markov models for protein sequence analysis
hmmer2 (2.3.2-7ubuntu1) [universe]
profile hidden Markov models for protein sequence analysis
hmmer2-pvm (2.3.2-7ubuntu1) [universe]
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.5-1) [universe]
prints the date in latin
horae (071~svn536-1) [multiverse]
interactive graphical processing and analysis of EXAFS data
hpcc (1.4.1-3) [universe]
HPC Challenge benchmark
htcondor (8.2.1~dfsg.1-1ubuntu1) [universe]
distributed workload management system
idba (1.1.2-1) [universe]
iterative De Bruijn Graph De Novo short read assembler for transcriptome
ifeffit (2:1.2.11d-9.1build1) [multiverse]
Interactive XAFS analysis program
ifrit (3.4.2-1) [universe]
powerful tool for visualizing 3-dimensional data sets
igv (2.3.14+dfsg-2) [multiverse]
Integrative Genomics Viewer
imagej (1.49c+dfsg-1) [universe]
Image processing program inspired by NIH Image
imagevis3d (3.1.0-3) [universe]
desktop volume rendering application for large data
imview (1.1.9c-12) [universe]
Image viewing and analysis application
indigo-utils (1.1.12-1) [universe]
Organic Chemistry Toolkit Utilities
infernal (1.1.1-1) [universe]
inference of RNA secondary structural alignments
ipig (0.0.r5-1) [universe]
integrating PSMs into genome browser visualisations
itksnap (2.2.0-1.1) [universe]
semi-automatic segmentation of structures in 3D images
jalview (2.7.dfsg-3) [universe]
multiple alignment editor
jblas (1.2.3-3) [universe]
fast linear algebra library for Java
jellyfish (1.1.11-1) [universe]
count k-mers in DNA sequences
jemboss (6.6.0+dfsg-1) [universe]
graphical user interface to EMBOSS
jmol (12.2.32+dfsg2-1) [universe]
Molecular Viewer
julia (0.2.1+dfsg-3) [universe]
high-performance programming language for technical computing
julia-factcheck (0.1.2-2) [universe]
Midje-like testing for Julia
kalign (1:2.03+20110620-2) [universe]
Global and progressive multiple sequence alignment
kalzium (4:4.14.0-0ubuntu1) [universe]
periodic table and chemistry tools
kalzium-data (4:4.14.0-0ubuntu1) [universe]
data files for Kalzium
kissplice (2.1.0-1) [universe]
Detection of various kinds of polymorphisms in RNA-seq data
klustakwik (2.0.1-1) [universe]
automatic sorting of the samples (spikes) into clusters
kst (2.0.3-1.3) [universe]
scientific data plotting tool
kst-data (2.0.3-1.3) [universe]
set of data files for kst
kstars (4:4.14.0-0ubuntu1) [universe]
desktop planetarium for KDE
kstars-data (4:4.14.0-0ubuntu1) [universe]
data files for KStars desktop planetarium
kstars-data-extra-tycho2 (1.1r1-9) [universe]
Tycho-2 star catalog for KStars
kxterm (20061220+dfsg3-4) [universe]
CERNLIB data analysis suite - KUIP terminal emulator
lammps (0~20140523.gite5e877d-1) [universe]
Molecular Dynamics Simulator
last-align (457-1) [universe]
genome-scale comparison of biological sequences
lhapdf-pdfsets-minimal (5.9.1-3build1) [universe]
Minimal PDF Sets of LHAPDF
libadios-bin (1.7.0-2) [universe]
ADIOS Adaptable IO system for simulations - binaries
libarb (5.5-5ubuntu1) [multiverse]
Integrated package for sequence database handling and analysis
libball1.4 (1.4.2+20140406-1) [universe]
Biochemical Algorithms Library
libball1.4-data (1.4.2+20140406-1) [universe]
Biochemical Algorithms Library
libballview1.4 (1.4.2+20140406-1) [universe]
Biochemical Algorithms Library, VIEW framework
libbiojava-java (1:1.7.1-5) [universe]
Java API to biological data and applications (default version)
libbiojava-java-demos (1:1.7.1-5) [universe]
Example programs for BioJava
libbiojava1.7-java (1:1.7.1-5) [universe]
Java API to biological data and applications (version 1.7)
libcamitk3 (3.3.2-1) [universe]
Computer Assisted Medical Intervention Tool Kit - runtime
libcassie1 (1.0.1+dfsg-3) [universe]
library implementating search algorithms
libclhep2.1 (2.1.4.1-1.1) [universe]
CLHEP: A Class Library for High Energy Physics
libclinica0 (0.3.0-1) [universe]
Simple medical records manager (shared library)
libej0 (3.1.5-2) [universe]
hardware & software framework for developing science experiments
libgenometools0 (1.5.3-2) [universe]
versatile genome analysis library
libgeotiff-epsg (1.4.0-1) [multiverse]
GeoTIFF library -- EPSG Geodetic Parameter Dataset
libghemical-data (3.0.0-2ubuntu1) [universe]
Molecular Modelling Library (data files)
libgnuradio-fcdproplus0 (0.0.1.2.1edbe52-2) [universe]
Funcube Dongle Pro Plus controller for GNU Radio
libgofigure0 (0.9.0-3build1) [universe]
Tool for visualizing, processing and analysing of bioimages
libgrits5 (0.8.1-1) [universe]
Grits is a Virtual Globe library
libgyoto1 (0.1.0-2ubuntu2) [universe]
General relativistic geodesic integration and ray-tracing
libhkl4 (4.0.3-4ubuntu1) [universe]
diffractometer computation control library
libkst2core2 (2.0.3-1.3) [universe]
kst core library
libkst2math2 (2.0.3-1.3) [universe]
kst math library
libkst2widgets2 (2.0.3-1.3) [universe]
kst widgets library
liblas-bin (1.7.0+dfsg-6) [universe]
ASPRS LiDAR data translation toolset
libliggghts3 (3.0.2+repack-1) [universe]
Open Source DEM Particle Simulation Software. Shared library
liblinear-tools (1.8+dfsg-3)
Standalone applications for LIBLINEAR
libncarg-bin (6.2.0-2.1ubuntu1) [universe]
NCAR command-language library - development tools
libncarg-data (6.2.0-2.1ubuntu1) [universe]
NCAR command-language library - Data
libnecpp-dev (1.5.0+cvs20101003-2.2ubuntu1) [universe]
development files for libnecpp
libnecpp0 (1.5.0+cvs20101003-2.2ubuntu1) [universe]
library to use NEC2++
libocas-tools (0.93-3) [universe]
Standalone applications implementing the OCAS solver
libopenmeeg1 (2.0.0.dfsg-5.1ubuntu1) [universe]
library for solving EEG and MEG forward and inverse problems
libpwiz-tools (3.0.4624-6ubuntu3) [universe]
ProteoWizard command line tools
libqtpropertybrowser3 (3.3.2-1) [universe]
Qt Property Browser Library - runtime
libroot-graf2d-postscript5.34 (5.34.19+dfsg-1) [universe]
Postscript/PDF renderer library for ROOT
libroot-proof-proofplayer5.34 (5.34.19+dfsg-1) [universe]
PROOF plugin for ROOT
libroot-proof5.34 (5.34.19+dfsg-1) [universe]
PROOF library for ROOT
librsl1 (1.43-1ubuntu1) [universe]
TRMM Radar Software Library
libsilo-bin (4.9.1-3) [universe]
Utilities to manipulate libsilo files
libsimgrid3.11 (3.11.1-7) [universe]
Toolkit for scalable simulation of distributed applications
libsquizz (0.99b+dfsg-3) [universe]
Conversion libs used by squizz genetic sequence converter
libstxxl1 (1.3.1-5ubuntu1) [universe]
C++ STL drop-in replacement for extremely large datasets
libxy-bin (1.3-1) [universe]
xylib - utilities
libyade (1.10.0-1ubuntu1) [universe]
Platform for discrete element modeling. Libraries
liggghts (3.0.2+repack-1) [universe]
Open Source DEM Particle Simulation Software.
litl-tools (0.1.5+dfsg-1ubuntu1) [universe]
Lightweight Trace Library - tools
logcentral (2.7-1) [universe]
Logging service for distributed applications
logcentral-tools (2.7-1) [universe]
Logging service for distributed applications
logol (1.7.0-1.1) [universe]
Pattern matching tool using Logol language
logol-bin (1.7.0-1.1) [universe]
Pattern matching tool using Logol language
loki (2.4.7.4-5) [universe]
MCMC linkage analysis on general pedigrees
loki-doc (2.4.7.4-5) [universe]
MCMC linkage analysis on general pedigrees (PS manual)
looptools (2.8-1) [universe]
Integral Evaluator of One-loop Feynman Diagram
ltrsift (1.0.2-1) [universe]
postprocessing and classification of LTR retrotransposons
ltrsift-examples (1.0.2-1) [universe]
example data for LTRsift
lutefisk (1.0.7+dfsg-3) [universe]
de novo interpretation of peptide CID spectra
macs (2.0.9.1-1) [universe]
Model-based Analysis of ChIP-Seq on short reads sequencers
mafft (7.164-1) [universe]
Multiple alignment program for amino acid or nucleotide sequences
mapsembler2 (2.1.6+dfsg-1) [universe]
bioinformatics targeted assembly software
maq (0.7.1-5) [universe]
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-6) [universe]
graphical read alignment viewer for short gene sequences
massxpert (3.4.1-1) [universe]
linear polymer mass spectrometry software
massxpert-data (3.4.1-1) [universe]
linear polymer mass spectrometry software - arch-indep data
matlab-gdf (0.1.2-2build4) [multiverse]
IO library for the GDF -- Matlab interface
maude (2.6-5) [universe]
high-performance logical framework
mayavi2 (4.3.1-3) [universe]
scientific visualization package for 2-D and 3-D data
mbt (3.2.10-4ubuntu1) [universe]
memory-based tagger-generator and tagger
mbtserver (0.7-3) [universe]
Server extensions for the MBT tagger
meep (1.2.1-1ubuntu1) [universe]
software package for FDTD simulation
meep-lam4 (1.2.1-3) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpi-default (1.2.1-2) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpich2 (1.2.1-3) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.2.1-2) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
melting (4.3.1+dfsg-1) [universe]
compute the melting temperature of nucleic acid duplex
melting-gui (4.3.1+dfsg-1) [universe]
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.18.1-3build4) [universe]
map editor for OpenStreetMap.org
metastudent (1.0.11-1) [universe]
predictor of Gene Ontology terms from protein sequence
metastudent-data (1.0.1-2) [universe]
predictor of Gene Ontology terms from protein sequence - data files
metastudent-data-2 (1.0.0-1) [universe]
predictor of Gene Ontology terms from protein sequence - data #2
mgltools-bhtree (1.5.7~rc1+cvs.20140424-1) [multiverse]
Bhtree library extension module
mgltools-cadd (1.5.7~rc1+cvs.20140424-1) [multiverse]
Computer Aided Drug Discovery (CADD) Pipeline
mgltools-cmolkit (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python classes to interpret trajectories of Gromacs
mgltools-dejavu (1.5.7~rc1+cvs.20140424-1) [multiverse]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python library for geometric analyses
mgltools-mglutil (1.5.7~rc1+cvs.20140424-1) [multiverse]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.7~rc1+cvs.20140424-1) [multiverse]
Opengltk Python extension
mgltools-pmv (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python-based Molecular Viewer
mgltools-pmv-test (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python-based Molecular Viewer (functionality tests)
mgltools-pyautodock (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python implementation of autodock
mgltools-pybabel (1.5.7~rc1+cvs.20140424-1) [multiverse]
molecular structure file access and interpretation
mgltools-pyglf (1.5.7~rc1+cvs.20140424-1) [multiverse]
GLF library Python extension to write text in OpenGL
mgltools-scenario2 (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python-based viewer of molecular structures
mgltools-sff (1.5.7~rc1+cvs.20140424-1) [multiverse]
Simple Force Field for Python
mgltools-support (1.5.7~rc1+cvs.20140424-1) [multiverse]
Update mechanism of MGLTools
mgltools-symserv (1.5.7~rc1+cvs.20140424-1) [multiverse]
Symetry server
mgltools-utpackages (1.5.7~rc1+cvs.20140424-1) [multiverse]
UT Austin software Python extensions
mgltools-viewerframework (1.5.7~rc1+cvs.20140424-1) [multiverse]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python-based Visual Programming Environment
mgltools-visionlibraries (1.5.7~rc1+cvs.20140424-1) [multiverse]
Extensions for Python-based Visual Programming Environment
mgltools-volume (1.5.7~rc1+cvs.20140424-1) [multiverse]
Volume rendering Python package
mgltools-webservices (1.5.7~rc1+cvs.20140424-1) [multiverse]
webservices for components of autodocktools
mia-tools (2.2.0-1) [universe]
Command line tools for gray scale image processing
mia-viewit (1.0.1-1) [universe]
Viewer program for 3D data sets created by using MIA
mialmpick (0.2.10-1) [universe]
Tools for landmark picking in 3D volume data sets
microbiomeutil (20101212+dfsg-1) [universe]
Microbiome Analysis Utilities
microbiomeutil-data (20101212+dfsg-1) [universe]
Reference 16S sequences and NAST-alignments used by microbiomeutil tools
microhope (3.1.5-2) [universe]
hardware & software framework to learn microcontrollers
minc-tools (2.2.00-5) [universe]
MNI medical image format tools
minia (1.6088-1) [universe]
short-read biological sequence assembler
minisat (1:2.2.1-5) [universe]
Fast and lightweight SAT solver
minisat+ (1.0-2) [universe]
solver for pseudo-Boolean constraints
minisat2 (1:2.2.1-5) [universe]
Transitional package for minisat
minisat2
virtual package provided by minisat
mipe (1.1-4) [universe]
Tools to store PCR-derived data
mira-assembler (4.0.2-1) [universe]
Whole Genome Shotgun and EST Sequence Assembler
mira-examples (4.0.2-1) [universe]
files to experiment with the mira assembler
mitools (1.8.5-2ubuntu1) [universe]
view, convert and perform basic maths with medical image datasets
mldemos (0.4.3-1build1) [universe]
Machine Learning Demos (MLDemos) with Visualization
mlpack-bin (1.0.8-1) [universe]
intuitive, fast, scalable C++ machine learning library (binaries)
mlv-smile (1.47-3) [universe]
Find statistically significant patterns in sequences
mmass (5.5.0-2) [universe]
Mass spectrometry tool for proteomics
mmass-modules (5.5.0-2) [universe]
Mass spectrometry tool for proteomics - extension modules
mobyle (1.5.3+dfsg-1) [universe]
Web portal that provides web forms for command-line software
mobyle-programs (5.1.2-1) [universe]
Program descriptions for the mobyle portal
mobyle-tutorials (1.5.0-1) [universe]
program tutorials for the mobyle portal
mobyle-utils (1.5.3+dfsg-1) [universe]
binary tools used by Mobyle
molds (0.3.0-3.1) [universe]
Semi-empirical electronic structure and molecular dynamics
montecarlo-base (20061220+dfsg3-3) [universe]
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-3) [universe]
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-6ubuntu1) [universe]
Semi-empirical Quantum Chemistry Library (binaries)
morse-simulator (1.2-1ubuntu1) [universe]
Multi-OpenRobot Simulation Engine
morse-simulator-data (1.2-1ubuntu1) [universe]
Multi-OpenRobot Simulation Engine
mothur (1.33.3+dfsg-2) [universe]
sequence analysis suite for research on microbiota
mothur-mpi (1.33.3+dfsg-2) [universe]
mpi-enabled binary for mothur
mpb (1.5-2) [universe]
MIT Photonic-Bands
mpb-mpi (1.5-2) [universe]
MIT Photonic-Bands, parallel (mpich) version
mpb-scm (1.5-2) [universe]
MIT Photonic-Bands initialisation files
mpqc (2.3.1-16ubuntu1) [universe]
Massively Parallel Quantum Chemistry Program
mpqc-openmpi (2.3.1-16ubuntu1) [universe]
Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)
mpqc-support (2.3.1-16ubuntu1) [universe]
Massively Parallel Quantum Chemistry Program (support tools)
mrbayes-mpi (3.2.2+dfsg-1) [universe]
Bayesian Inference of Phylogeny - mpi version
mriconvert (1:2.0.7-2) [universe]
medical image file conversion utility
mricron (0.20120505.1~dfsg.1-1) [universe]
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20120505.1~dfsg.1-1) [universe]
data files for MRIcron
mrpt-apps (1:1.0.2-1ubuntu4) [universe]
Mobile Robot Programming Toolkit - Console and GUI applications
mrtrix (0.2.12-1) [universe]
diffusion-weighted MRI white matter tractography
mssstest (3.0-3) [multiverse]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.23~dfsg-2) [universe]
Efficient sequence alignment of full genomes
muscle (1:3.8.31-1) [universe]
Multiple alignment program of protein sequences
music-bin (1.0.7-1.2build1) [universe]
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.1-3) [universe]
multiple structural alignment of proteins
mustang-testdata (3.2.1-3) [universe]
multiple structural alignment of proteins, test data
nast-ier (20101212+dfsg-1) [universe]
NAST-based DNA alignment tool
nautic (1.5-1) [universe]
computation of observer position in astro-navigation
ncbi-blast+ (2.2.29-3) [universe]
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.2.29-3) [universe]
NCBI Blast legacy call script
ncbi-epcr (2.3.12-1-1) [universe]
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20120620-7) [universe]
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-seg (0.0.20000620-1) [universe]
tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin (6.1.20120620-7) [universe]
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20120620-7) [universe]
NCBI libraries for biology applications (X-based utilities)
ncl-ncarg (6.2.0-2.1ubuntu1) [universe]
NCAR Command Language and NCAR graphics
ncoils (2002-4) [universe]
coiled coil secondary structure prediction
ncview (1.93g-1build2) [universe]
A X11 visual browser for NetCDF format files
necpp (1.5.0+cvs20101003-2.2ubuntu1) [universe]
NEC2 Evolution Antenna Modelling System
neobio (0.0.20030929-1.1) [universe]
computes alignments of amino acid and nucleotide sequences
netcdf-bin (1:4.1.3-7ubuntu2) [universe]
Programs for reading and writing NetCDF files
nexus-tools (4.3.2-svn1921-2) [universe]
NeXus scientific data file format - applications
nifti2dicom (0.4.8-1build1) [universe]
convert 3D medical images to DICOM 2D series
nifti2dicom-data (0.4.8-1build1) [universe]
data files for nifti2dicom
njplot (2.4-2build1) [universe]
phylogenetic tree drawing program
node-sphericalmercator (1.0.1-2) [universe]
Spherical Mercator projection support for NodeJS
node-srs (0.3.2+ds1-1build1) [universe]
spatial reference library for Node.js
norsnet (1.0.17-1) [universe]
tool to identify unstructured loops in proteins
norsp (1.0.6-1) [universe]
predictor of non-regular secondary structure
numdiff (5.8.1-1) [universe]
Compare similar files with numeric fields
nwchem (6.3+r1-1build1) [universe]
High-performance computational chemistry software
nwchem-data (6.3+r1-1build1) [universe]
High-performance computational chemistry software (data files)
oar-admin (2.5.2-4.1) [universe]
OAR batch scheduler administration tools package
oar-api (2.5.2-4.1) [universe]
transitional dummy package
oar-common (2.5.2-4.1) [universe]
OAR batch scheduler common package
oar-node (2.5.2-4.1) [universe]
OAR batch scheduler node package
oar-restful-api (2.5.2-4.1) [universe]
OAR RESTful API
oar-server (2.5.2-4.1) [universe]
OAR batch scheduler server package
oar-server-mysql (2.5.2-4.1) [universe]
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.2-4.1) [universe]
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.2-4.1) [universe]
OAR batch scheduler user package
oar-user-mysql (2.5.2-4.1) [universe]
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.2-4.1) [universe]
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.2-4.1) [universe]
OAR batch scheduler visualization tool package
oasis3 (3.3.beta.dfsg.1-8build3) [universe]
Coupler for exchanging fields between components of Earth system models
oasis3-examples (3.3.beta.dfsg.1-8build3) [universe]
Example models for the OASIS climate model coupler
obdgpslogger (0.16-1.2build1) [universe]
suite of tools to log OBDII and GPS data
objcryst-fox (1.9.6.0-2) [universe]
Free Objects for Xtallography
oce-draw (0.15-4) [universe]
OpenCASCADE Community Edition CAE platform shared library
octave-biosig (1.3.0-2build2) [universe]
Octave bindings for BioSig library
octave-gdf (0.1.2-2build4) [universe]
IO library for the GDF -- Octave interface
octave-lhapdf (5.9.1-3build1) [universe]
Octave Bindings for LHAPDF
octave-psychtoolbox-3 (3.0.11.20140430.dfsg1-1) [universe]
toolbox for vision research -- Octave bindings
odin (1.8.5-2ubuntu1) [universe]
develop, simulate and run magnetic resonance sequences
ogdi-bin (3.2.0~beta2-7.1) [universe]
Open Geographic Datastore Interface Library -- utilities
openbabel (2.3.2+dfsg-1.3ubuntu1) [universe]
Chemical toolbox utilities (cli)
openbabel-gui (2.3.2+dfsg-1.3ubuntu1) [universe]
Chemical toolbox utilities (graphical user interface)
opencaster (3.2.2+dfsg-1) [universe]
MPEG2 transport stream data generator and packet manipulator
openmeeg-tools (2.0.0.dfsg-5.1ubuntu1) [universe]
openmeeg library -- command line tools
openmolar (0.6.0-1) [universe]
dental practice management software
openms (1.11.1-5) [universe]
package for LC/MS data management and analysis
openms-common (1.11.1-5) [universe]
package for LC/MS data management and analysis - shared data
openmx (3.7.6-1build1) [universe]
package for nano-scale material simulations
openmx-data (3.7.6-1build1) [universe]
package for nano-scale material simulations (data)
openrocket (14.06) [universe]
Model Rocket Simulator
opensesame (0.27.4-2) [universe]
graphical experiment builder for the social sciences
openturns-examples (1.2-2) [universe]
examples of OpenTURNS functionalities
openturns-validation (1.2-2) [universe]
validation files for OpenTURNS
openuniverse (1.0beta3.1+dfsg-3) [universe]
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-3) [universe]
3D Universe Simulator data files
openwalnut-modules (1.4.0~rc1+hg3a3147463ee2-1) [universe]
Loaders, algorithms and visualization modules for OpenWalnut
openwalnut-qt4 (1.4.0~rc1+hg3a3147463ee2-1) [universe]
Qt based user interface for OpenWalnut
opj2dat (20080225-2.1) [universe]
OriginLab Origin project files to data files converter
optgeo (2.21-3) [universe]
simulator for geometrical optics
opticalraytracer (3.2-1.1ubuntu1) [universe]
Virtual lens design workshop
origami (0.7.4-1) [universe]
command-line management tool for Folding @ Home clients
orthanc (0.7.6+dfsg-1) [universe]
RESTful DICOM server for healthcare and medical research
ossim-core (1.8.16-2) [universe]
The OSSIM core utilities
otf-trace (1.12.5+dfsg-1) [universe]
Open Trace Format support library - development files
ovito (2.3.3-3build1) [universe]
visualization and analysis tool for atomistic simulation data
paje.app (1.98-1build2) [universe]
generic visualization tool (Gantt chart and more)
paml (4.8+dfsg-1) [multiverse]
Phylogenetic Analysis by Maximum Likelihood (PAML)
paraview (4.1.0+dfsg-3ubuntu2) [universe]
Parallel Visualization Application
parsinsert (1.04-1) [universe]
Parsimonious Insertion of unclassified sequences into phylogenetic trees
paw (1:2.14.04.dfsg.2-9) [universe]
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-9) [universe]
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-9) [universe]
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-9) [universe]
Physics Analysis Workstation examples and tests
pdb2pqr (1.9.0+dfsg-1) [universe]
Preparation of protein structures for electrostatics calculations
pegasus-wms (4.4.0+dfsg-4) [universe]
Scientific workflow management system for HTCondor
perlprimer (1.1.21-2) [universe]
Graphical design of primers for PCR
perlprimer-doc (1.1.21-2) [universe]
Tutorial to perlprimer
perm (0.4.0-1) [universe]
efficient mapping of short reads with periodic spaced seeds
phylip (1:3.695-1) [multiverse]
package of programs for inferring phylogenies
phylip-doc (1:3.695-1) [multiverse]
package of programs for inferring phylogenies (documentation)
phyml (2:20120412-2) [universe]
Phylogenetic estimation using Maximum Likelihood
phyutility (2.7.3-1) [universe]
simple analyses or modifications on both phylogenetic trees and data matrices
picard-tools (1.113-1) [universe]
Command line tools to manipulate SAM and BAM files
picosat (959-1) [universe]
SAT solver with proof and core support
pktools (2.5.2+20140505-1) [universe]
GDAL add-on tools to perform useful raster processing
planets (0.1.13-14build1) [universe]
Gravitation simulation of planetary bodies
plastimatch (1.5.16+dfsg-1) [universe]
medical image reconstruction and registration
plink (1.07-3) [universe]
whole-genome association analysis toolset
poa (2.0+20060928-3) [universe]
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106-2.1) [universe]
population genetic software
pp-popularity-contest (1.0.6-2) [universe]
PredictProtein popularity contest
praat (5.3.16-1ubuntu2) [universe]
program for speech analysis and synthesis
prank (0.0.140110-1) [universe]
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
predictnls (1.0.20-1) [universe]
prediction and analysis of protein nuclear localization signals
predictprotein (1.1.01-1) [universe]
suite of protein sequence analysis tools
prime-phylo (1.0.11-1build3) [universe]
bayesian estimation of gene trees taking the species tree into account
primer3 (2.3.6-1) [universe]
Tool to design flanking oligo nucleotides for DNA amplification
proalign (0.603-1) [universe]
Probabilistic multiple alignment program
probabel (0.4.3-2) [universe]
Toolset for Genome-Wide Association Analysis
probabel-examples (0.4.3-2) [universe]
Example files for ProbABEL
probalign (1.4-3) [universe]
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-9) [universe]
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-9) [universe]
Extra programs from the probcons package
proda (1.0-8) [universe]
multiple alignment of protein sequences
profbval (1.0.22-1) [universe]
predictor of flexible/rigid protein residues from sequence
profisis (1.0.11-1) [universe]
prediction of protein-protein interaction sites from sequence
profnet-bval (1.0.22-1) [universe]
neural network architecture for profbval
profnet-chop (1.0.22-1) [universe]
neural network architecture for profchop
profnet-con (1.0.22-1) [universe]
neural network architecture for profcon
profnet-isis (1.0.22-1) [universe]
neural network architecture for profisis
profnet-md (1.0.22-1) [universe]
neural network architecture for metadisorder
profnet-norsnet (1.0.22-1) [universe]
neural network architecture for norsnet
profnet-prof (1.0.22-1) [universe]
neural network architecture for profacc
profnet-snapfun (1.0.22-1) [universe]
neural network architecture for snapfun
profphd (1.0.40-1) [universe]
secondary structure and solvent accessibility predictor
profphd-net (1.0.22-1) [universe]
neural network architecture for profphd
profphd-utils (1.0.10-1) [universe]
profphd helper utilities convert_seq and filter_hssp
proftmb (1.1.12-2) [universe]
per-residue prediction of bacterial transmembrane beta barrels
proj-bin (4.8.0-5) [universe]
Cartographic projection library (tools)
prooftree (0.12-1build1) [universe]
proof-tree visualization for Proof General
psi3 (3.4.0-5) [universe]
Quantum Chemical Program Suite
psi4 (4.0~beta5+dfsg-2build1) [universe]
Quantum Chemical Program Suite
psi4-data (4.0~beta5+dfsg-2build1) [universe]
Quantum Chemical Program Suite (data files)
psychopy (1.79.00+git16-g30c9343.dfsg-1) [universe]
environment for creating psychology stimuli in Python
psychtoolbox-3-common (3.0.11.20140430.dfsg1-1) [universe]
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (3.0.11.20140430.dfsg1-1) [universe]
toolbox for vision research -- arch-specific parts
pyfai (0.3.5-1) [universe]
python library for Fast Azimuthal Integration
pyformex (0.8.6-4ubuntu3) [universe]
program to create 3D geometry from Python scripts.
pyformex-lib (0.8.6-4ubuntu3) [universe]
program to create 3D geometry from Python scripts.
pylang (0.0.4-0ubuntu2) [universe]
complete right sentence with random words generated.
pymca (4.7.1+dfsg-2) [universe]
Python applications and toolkit for X-ray fluorescence analysis
pymca-data (4.7.1+dfsg-2) [universe]
Architecture independent data files for PyMca
pymol (1.7.1.3-1) [universe]
Molecular Graphics System
pythia8-data (8.1.86-1) [universe]
PYTHIA8 data files
python-expyriment (0.7.0+git34-g55a4e7e-3) [universe]
Python library for cognitive and neuroscientific experiments
python-ifeffit (2:1.2.11d-9.1build1) [multiverse]
Python GUI interface and extensions for IFEFFIT
python-necpp (1.5.0+cvs20101003-2.2ubuntu1) [universe]
Python module for using NEC2++
python-nifti (0.20100607.1-4) [universe]
Python interface to the NIfTI I/O libraries
python-pyepl (1.1.0+git12-g365f8e3-2) [universe]
module for coding psychology experiments in Python
python-pyepl-common (1.1.0+git12-g365f8e3-2) [universe]
module for coding psychology experiments in Python
python-pyode (1.2.0-4+cvs20090320.1) [universe]
Python bindings for The Open Dynamics Engine
python-saga (2.1.2+dfsg-1) [universe]
SAGA GIS Python bindings
python3-fitbitscraper (0.1-1) [universe]
Python library for scraping the FitBit website for data
python3-morse-simulator (1.2-1ubuntu1) [universe]
Multi-OpenRobot Simulation Engine
qfits-tools (6.2.0-8) [universe]
FITS manipulation tools
qgis (2.2.0-1) [universe]
Geographic Information System (GIS)
qgis-api-doc (2.2.0-1) [universe]
QGIS API documentation
qgis-common (2.2.0-1) [universe]
QGIS - architecture-independent data
qgis-mapserver (2.2.0-1) [universe]
QGIS mapserver
qgis-plugin-globe (2.2.0-1) [universe]
OSG globe plugin for QGIS
qgis-plugin-globe-common (2.2.0-1) [universe]
OSG globe plugin for QGIS - architecture-independent data
qgis-plugin-grass (2.2.0-1) [universe]
GRASS plugin for QGIS
qgis-plugin-grass-common (2.2.0-1) [universe]
GRASS plugin for QGIS - architecture-independent data
qgis-providers (2.2.0-1) [universe]
collection of data providers to QGIS
qgis-providers-common (2.2.0-1) [universe]
collection of data providers to QGIS - architecture-independent files
qgis-sqlanywhere (2.2.0-1) [universe]
QGIS sql anywhere plugin and provider
qiime (1.8.0+dfsg-2) [universe]
Quantitative Insights Into Microbial Ecology
qmc (0.94-3build2) [universe]
Quine McClusky Simplification Tool
qnifti2dicom (0.4.8-1build1) [universe]
convert 3D medical images to DICOM 2D series (gui)
qrisk2 (0.0.r31-1) [universe]
cardiovascular disease risk calculator
qthid-fcd-controller (4.1-3) [universe]
Funcube Dongle controller
quantum-espresso (5.1+dfsg-1build1) [universe]
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
quantum-espresso-data (5.1+dfsg-1build1) [universe]
Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
qutemol (0.4.1~cvs20081111-3build1) [universe]
interactive visualization of macromolecules
r-cran-colorspace (1.2-4-1) [universe]
GNU R Color Space Manipulation
r-cran-epibasix (1.3-1) [universe]
GNU R Elementary Epidemiological Functions
r-cran-genetics (1.3.8.1-1) [universe]
GNU R package for population genetics
r-cran-haplo.stats (1.6.8-1) [universe]
GNU R package for haplotype analysis
r-cran-maptools (1:0.8-23-1) [multiverse]
GNU R Tools for reading and handling spatial objects
r-cran-msm (1.3-1) [universe]
GNU R Multi-state Markov and hidden Markov models in continuous time
r-cran-randomforest (4.6-7-1build1) [universe]
GNU R package implementing the random forest classificator
r-cran-sp (1:1.0-15-1) [universe]
GNU R classes and methods for spatial data
r-cran-spc (1:0.5.0-1) [universe]
GNU R Statistical Process Control
r-cran-surveillance (1.7-0-1) [multiverse]
development and the evaluation of epidemiological outbreak detection algorithms
r-cran-vcd (1:1.3-1-1) [universe]
GNU R Visualizing Categorical Data
r-cran-xtable (1:1.7-3-1) [universe]
GNU R coerce data to LaTeX and HTML tables
r-other-bio3d (1.1-5-1build1) [universe]
GNU R package for biological structure analysis
raccoon (1.0b-1) [multiverse]
preparation of in silico drug screening projects
rasmol (2.7.5.2-2) [universe]
Visualize biological macromolecules
rasmol-doc (2.7.5.2-2) [universe]
Documentation for rasmol
raster3d (3.0-3-1) [multiverse]
tools for generating images of proteins or other molecules
rate4site (3.0.0-1) [universe]
detector of conserved amino-acid sites
raxml (8.0.26-1) [universe]
Randomized Axelerated Maximum Likelihood of phylogenetic trees
ray (2.3.0-2) [universe]
parallel de novo genome assemblies of next-gen sequencing data
ray-extra (2.3.0-2) [universe]
Scripts and XSL sheets for post-processing for ray de novo assembler
rdkit-data (201309-1build1) [universe]
Collection of cheminformatics and machine-learning software (data files)
readseq (1-11) [universe]
Conversion between sequence formats
reprof (1.0.1-1) [universe]
protein secondary structure and accessibility predictor
rivet (1.8.3-1.1) [universe]
Robust Independent Validation of Experiment and Theory
rivet-plugins (1.8.3-1.1) [universe]
Analysis plugins of Rivet
rivet-plugins-data (1.8.3-1.1) [universe]
Data files of Rivet analysis plugins
rivet-plugins-dev (1.8.3-1.1) [universe]
Template generator of Rivet analysis plugin
rivet-root-converter (1.8.3-1.1) [universe]
Rivet and ROOT file format converter
rnahybrid (2.1.1-2) [universe]
Fast and effective prediction of microRNA/target duplexes
robot-player (3.0.2+dfsg-4.1ubuntu4) [universe]
Networked server for robots and sensors
robot-player-dev (3.0.2+dfsg-4.1ubuntu4) [universe]
Networked server for robots and sensors - development package
robot-player-doc (3.0.2+dfsg-4.1ubuntu4) [universe]
Networked server for robots and sensors (documentation)
rocs (4:4.14.0-0ubuntu1) [universe]
graph theory IDE
root-plugin-geom-gdml (5.34.19+dfsg-1) [universe]
GDML import/export module for ROOT geometries
root-plugin-geom-geombuilder (5.34.19+dfsg-1) [universe]
Geometry builder plugin for ROOT
root-plugin-geom-geompainter (5.34.19+dfsg-1) [universe]
Geometry painter plugin for ROOT
root-plugin-graf2d-asimage (5.34.19+dfsg-1) [universe]
AfterImage plugin for ROOT
root-plugin-graf2d-qt (5.34.19+dfsg-1) [universe]
Graf2d Qt plugin for ROOT
root-plugin-graf2d-x11 (5.34.19+dfsg-1) [universe]
X window system plugin for ROOT
root-plugin-graf3d-x3d (5.34.19+dfsg-1) [universe]
X 3D plugin for ROOT
root-plugin-gui-fitpanel (5.34.19+dfsg-1) [universe]
GUI element for fits plugin for ROOT
root-plugin-gui-guibuilder (5.34.19+dfsg-1) [universe]
GUI editor plug-in for ROOT
root-plugin-gui-qt (5.34.19+dfsg-1) [universe]
Qt plugin for ROOT
root-plugin-gui-sessionviewer (5.34.19+dfsg-1) [universe]
GUI to browse an interactive PROOF session
root-plugin-hist-hbook (5.34.19+dfsg-1) [universe]
Hbook plugin for ROOT
root-plugin-hist-histpainter (5.34.19+dfsg-1) [universe]
Histogram painter plugin for ROOT
root-plugin-hist-spectrumpainter (5.34.19+dfsg-1) [universe]
Spectrum painter plugin for ROOT
root-plugin-io-sql (5.34.19+dfsg-1) [universe]
SQL plugin for ROOT
root-plugin-io-xml (5.34.19+dfsg-1) [universe]
XML reader plugin for ROOT
root-plugin-math-fftw3 (5.34.19+dfsg-1) [universe]
FFTw plugin for ROOT
root-plugin-math-fumili (5.34.19+dfsg-1) [universe]
Fumili plugin for ROOT
root-plugin-math-minuit2 (5.34.19+dfsg-1) [universe]
Minuit version 2 plugin for ROOT
root-plugin-montecarlo-pythia8 (5.34.19+dfsg-1) [universe]
Pythia version 8 plugin for ROOT
root-plugin-net-globus (5.34.19+dfsg-1) [universe]
Globus plugin for ROOT
root-plugin-net-krb5 (5.34.19+dfsg-1) [universe]
Kerberos (version 5) plugin for ROOT
root-plugin-sql-mysql (5.34.19+dfsg-1) [universe]
MySQL client plugin for ROOT
root-plugin-sql-odbc (5.34.19+dfsg-1) [universe]
ODBC plugin for ROOT
root-plugin-sql-pgsql (5.34.19+dfsg-1) [universe]
PostgreSQL client plugin for ROOT
root-plugin-tree-treeviewer (5.34.19+dfsg-1) [universe]
GUI to browse a ROOT tree
root-system (5.34.19+dfsg-1) [universe]
metapackage to install all ROOT packages
root-system-bin (5.34.19+dfsg-1) [universe]
Numerical data analysis framework - general applications
root-system-common (5.34.19+dfsg-1) [universe]
Common files for ROOT
root-system-proofd (5.34.19+dfsg-1) [universe]
Parallel ROOt Facility - distributed, parallel computing
root-system-rootd (5.34.19+dfsg-1) [universe]
ROOT remote file server
rtax (0.984-2) [universe]
Classification of sequence reads of 16S ribosomal RNA gene
saga (2.1.2+dfsg-1) [universe]
System for Automated Geoscientific Analyses
saint (2.3.4+dfsg-2) [universe]
Significance Analysis of INTeractome
salome-kernel (6.5.0-8ubuntu1) [universe]
Numerical simulation pre- and post-processor
samtools (0.1.19-1ubuntu1) [universe]
processing sequence alignments in SAM and BAM formats
saods9 (7.2+dfsg-5) [universe]
Image display tool for astronomy
saods9-blt (7.2+dfsg-5) [universe]
BLT subpackage for saods9
saods9-data (7.2+dfsg-5) [universe]
Image display tool for astronomy (shared data)
sat4j (2.3.3-1) [universe]
Efficient library of SAT solvers in Java
savi (1.4.6-1) [universe]
satellite constellation visualisation
science-distributedcomputing (1.0ubuntu4) [universe]
Debian Science Distributed Computing packages
science-electrophysiology (1.0ubuntu4) [universe]
Debian Science packages for Electrophysiology
science-highenergy-physics (1.0ubuntu4) [universe]
Debian Science High Energy Physics packages
science-highenergy-physics-dev (1.0ubuntu4) [universe]
Debian Science High Energy Physics development packages
science-machine-learning (1.0ubuntu4) [universe]
Debian Science Machine Learning packages
science-nanoscale-physics (1.0ubuntu4) [universe]
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (1.0ubuntu4) [universe]
Debian Science Nanoscale Physics development packages
science-neuroscience-modeling (1.0ubuntu4) [universe]
Debian Science packages for modeling of neural systems
science-physics-dev (1.0ubuntu4) [universe]
Debian Science Physics-dev packages
science-psychophysics (1.0ubuntu4) [universe]
Debian Science packages for Psychophysics
science-simulations (1.0ubuntu4) [universe]
Debian Science Simulation packages
seaview (1:4.5.1-1) [multiverse]
Multiplatform interface for sequence alignment and phylogeny
seq-gen (1.3.3-1) [universe]
simulate the evolution of nucleotide or amino acid sequences
seqtk (1.0-1) [universe]
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sextractor (2.19.5+dfsg-1) [universe]
Source extractor for astronomical images
shelxle (1.0.661-1) [universe]
graphical user interface for SHELXL
shogun-cmdline-static (3.2.0-6) [universe]
Large Scale Machine Learning Toolbox
sibsim4 (0.20-2) [universe]
align expressed RNA sequences on a DNA template
sift (4.0.3b-4) [multiverse]
predicts if a substitution in a protein has a phenotypic effect
sigma-align (1.1.3-3) [universe]
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.5.1+svn556-1ubuntu3) [universe]
GUI viewer for biosignals such as EEG, EMG, and ECG
sim4 (0.0.20121010-1) [universe]
tool for aligning cDNA and genomic DNA
simgrid-java (3.11.1-7) [universe]
Toolkit for scalable simulation of distributed applications
sixpack (1:0.68-1ubuntu1) [multiverse]
full-featured package for XAS analysis
skycat (3.1.2+starlink1~b-8) [universe]
Image visualization and access to catalogs and data for astronomy
slang-xfig (0.2.0~.35-1.1) [universe]
produce plots and drawings through Xfig's fig2dev in S-Lang
smalt (0.7.6-3) [universe]
Sequence Mapping and Alignment Tool
smalt-examples (0.7.6-3) [universe]
Sequence Mapping and Alignment Tool (examples)
snap (2010-07-28-2) [universe]
location of genes from DNA sequence with hidden markov model
snaphu (1.4.2-2) [multiverse]
Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
snp-sites (1.5.0-1ubuntu1) [universe]
Binary code for the package snp-sites
soapdenovo (1.05-2) [universe]
short-read assembly method to build de novo draft assembly
soapdenovo2 (240+dfsg-1) [universe]
short-read assembly method to build de novo draft assembly
spass (3.7-3) [universe]
An automated theorem prover for first-order logic with equality
spatialite-bin (4.1.1-4) [universe]
Geospatial extension for SQLite - tools
spd (1.3.0-1ubuntu1) [universe]
Synchrotron image corrections and azimuthal integration
spread-phy (1.0.5+dfsg-1) [multiverse]
analyze and visualize phylogeographic reconstructions
squizz (0.99b+dfsg-3) [universe]
Converter for genetic sequences and alignments
sra-toolkit (2.3.4-2+dfsg-2ubuntu1) [universe]
utilities for the NCBI Sequence Read Archive
sra-toolkit-libs-dev (2.3.4-2+dfsg-2ubuntu1) [universe]
Development files for the NCBI SRA Toolkit's libraries
sra-toolkit-libs0 (2.3.4-2+dfsg-2ubuntu1) [universe]
Libraries for the SRA Toolkit
ssake (3.8.2-1) [universe]
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.8.2-1) [universe]
example data for SSAKE, a genomic assembler of short reads
staden (2.0.0+b10-1.1) [universe]
DNA sequence assembly (Gap4/Gap5), editing and analysis tools
staden-common (2.0.0+b10-1.1) [universe]
Architecture independent files for Staden
staden-io-lib-examples (1.13.7-1) [universe]
programs for maniuplating DNA sequencing files
staden-io-lib-utils (1.13.7-1) [universe]
programs for maniuplating DNA sequencing files
stardata-common (0.8) [universe]
Common framework to manage astronomy packages
starplot (0.95.5-8.1) [universe]
3-dimensional perspective star map viewer
starpu-contrib-examples (1.1.2+dfsg-2) [multiverse]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples (1.1.2+dfsg-1build1) [universe]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples
virtual package provided by starpu-contrib-examples
stellarium (0.13.0-2) [universe]
real-time photo-realistic sky generator
stellarium-data (0.13.0-2) [universe]
Stellarium data files
stimfit (0.13.18-1) [universe]
Program for viewing and analyzing electrophysiological data
sumo (0.21.0+dfsg-1) [universe]
Simulation of Urban MObility (SUMO)
survex (1.2.14-1build1) [universe]
cave surveying and mapping software
survex-aven (1.2.14-1build1) [universe]
sophisticated cave survey viewer for Survex
survex-svxedit (1.2.14-1build1) [universe]
survey data editor for Survex
swarp (2.19.1-1) [universe]
resample and co-add together FITS images
swarp
virtual package provided by suckless-tools
swe-basic-data (1.80.00.0002-1ubuntu1) [universe]
basic data files for the libswe package
swe-standard-data (00004-1) [universe]
standard data for the Swiss Ephemeris
syrthes (3.4.3-dfsg1-8) [universe]
Transient thermal simulations in complex solid geometries
t-coffee (10.00.r1613-1) [universe]
Multiple Sequence Alignment
t-coffee-examples (10.00.r1613-1) [universe]
annotated examples for the use of T-Coffee
tabix (0.2.6-2) [universe]
generic indexer for TAB-delimited genome position files
tandem-mass (1:2013.09.01-1) [universe]
mass spectrometry software for protein identification
tcd-utils (20061127-2) [universe]
convert Tide Constituent Database (TCD) files
tcl-fitstcl (2.3-3) [universe]
Tcl interface to FITS files
terraintool (1.12a-1) [universe]
Generates survex format terrain models from SRTM and ASTER data
tessa (0.3.1-6build2) [universe]
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-6build2) [universe]
simulation of 3D optical systems using FDTD on MPI clusters
thepeg (1.8.0-1) [universe]
Toolkit for High Energy Physics Event Generation
thepeg-gui (1.8.0-1) [universe]
Java GUI of ThePEG
thepeg-reference (1.8.0-1) [universe]
Code reference of ThePEG
therion (5.3.14-1) [universe]
Cave surveying - 2D and 3D drawing software
therion-doc (5.3.14-1) [universe]
Documentation for Therion Cave surveying software
therion-viewer (5.3.14-1) [universe]
Cave surveying - 3D viewer for therion models
theseus (3.0.0-1) [universe]
superimpose macromolecules using maximum likelihood
tigr-glimmer (3.02-3) [universe]
Gene detection in archea and bacteria
timbl (6.4.4-4ubuntu1) [universe]
Tilburg Memory Based Learner
timblserver (1.7-4) [universe]
Server extensions for Timbl
tm-align (20140601+dfsg-1) [universe]
structual alignment of proteins
tophat (2.0.12+dfsg-1) [universe]
fast splice junction mapper for RNA-Seq reads
topp (1.11.1-5) [universe]
set of programs implementing The OpenMS Proteomic Pipeline
transcalc (0.14-5ubuntu1) [universe]
microwave and RF transmission line calculator
transtermhp (2.09-2) [universe]
find rho-independent transcription terminators in bacterial genomes
travis (140117-1) [universe]
trajectory analyzer and visualizer
tree-ppuzzle (5.2-7ubuntu1) [universe]
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-7ubuntu1) [universe]
Reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle-doc (5.2-7ubuntu1) [universe]
Reconstruction of phylogenetic trees by maximum likelihood
treeview (1.1.6.4+dfsg-1) [multiverse]
Java re-implementation of Michael Eisen's TreeView
treeviewx (0.5.1+20100823-2) [universe]
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [multiverse]
High-quality 2-D mesh generator binary programs
trimmomatic (0.32+dfsg-1) [universe]
flexible read trimming tool for Illumina NGS data
tunnelx (20140102-2) [universe]
Cave Survey drawing software
twms (0.05t-2) [universe]
tiny web map service
uc-echo (1.12-7) [universe]
error correction algorithm designed for short-reads from NGS
ucto (0.5.3-3.1ubuntu1) [universe]
Unicode Tokenizer
ugene (1.9.8+repack-0ubuntu4) [universe]
integrated bioinformatics toolkit
ugene-data (1.9.8+repack-0ubuntu4) [universe]
required data for UGENE - integrated bioinformatics toolkit
uhd-host (3.7.1-2) [universe]
universal hardware driver for Ettus Research products
units-filter (3.7-1) [universe]
Parser for expressions concerning physical values
v-sim (3.7.1-1ubuntu1) [universe]
Visualize atomic structures
v-sim-common (3.7.1-1ubuntu1) [universe]
Visualize atomic structures (support files)
v-sim-plugins (3.7.1-1ubuntu1) [universe]
Plugins for V_Sim (a 3D visualization package)
varscan (2.3.6+dfsg-1) [multiverse]
variant detection in next-generation sequencing data
vcftools (0.1.12+dfsg-1) [universe]
Collection of tools to work with VCF files
velvet (1.2.10+dfsg1-1) [universe]
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg1-1) [universe]
Example data for the Velvet sequence assembler
velvet-long (1.2.10+dfsg1-1) [universe]
Nucleic acid sequence assembler for very short reads, long version
velvet-tests (1.2.10+dfsg1-1) [universe]
Test data for the Velvet sequence assembler
velvetoptimiser (2.2.5-2) [universe]
automatically optimise Velvet do novo assembly parameters
veusz (1.20.1-3) [universe]
2D scientific plotting application with graphical interface
veusz-helpers (1.20.1-3) [universe]
Architecture-specific helper module for Veusz
viewmol (2.4.1-20) [universe]
A graphical front end for computational chemistry programs.
visp-images-data (2.9.0-2) [universe]
visual servoing library - reference files
vistrails (2.1.1-1) [universe]
Science visualisation workflow toolkit
vmtk (1.0.1-3) [multiverse]
the Vascular Modeling Toolkit
votca-csg (1.2.3-1) [universe]
VOTCA's coarse-graining engine
votca-csg-scripts (1.2.3-1) [universe]
VOTCA's coarse-graining scripts
votca-csg-tutorials (1.2.3-1) [universe]
VOTCA's coarse-graining tutorials
vowpal-wabbit (7.3-1.1) [universe]
fast and scalable online machine learning algorithm
voxbo (1.8.5~svn1246-1.1) [universe]
processing, statistical analysis, and display of brain imaging data
wcslib-tools (4.23-1) [universe]
Command line tools utilizing wcslib
wcslib-tools-wcsgrid (4.23-1) [multiverse]
Command line tool utilizing libpgsbox
wcstools (3.8.7-2) [universe]
Handle the WCS of a FITS image
weka (3.6.11-1) [universe]
Machine learning algorithms for data mining tasks
wfrog (0.8.2+svn953-1) [universe]
Web-based customizable weather station software
wigeon (20101212+dfsg-1) [universe]
reimplementation of the Pintail 16S DNA anomaly detection utility
wise (2.4.1-16) [universe]
comparison of biopolymers, commonly DNA and protein sequences
wxastrocapture (1.8.1+git20140303+dfsg-2) [universe]
Windows linuX Astronomy Capture
xbs (0-8) [universe]
3-d models and movies of molecules
xcrysden (1.5.53-1) [universe]
Crystalline and Molecular Structure Visualizer
xcrysden-data (1.5.53-1) [universe]
Crystalline and Molecular Structure Visualizer (Data Files)
xdrawchem (2.0-2) [universe]
Chemical structures and reactions editor
xflr5 (6.09.06-2) [universe]
analysis tool for airfoils
xfoil (6.99.dfsg-2) [universe]
program for the design and analysis of subsonic airfoils
xmakemol (5.16-7) [universe]
program for visualizing atomic and molecular systems
xmakemol-gl (5.16-7) [universe]
program for visualizing atomic and molecular systems (OpenGL)
xmds (1.6.6-7) [universe]
eXtensible Multi-Dimensional Simulator
xmds2 (2.2.0+dfsg1-3) [universe]
eXtensible Multi-Dimensional Simulator
xpa-tools (2.1.15-3) [universe]
Tools for seamless communication between Unix programs
xplot (1.19-9build1) [universe]
simple on-screen x-y column data plotter
xplot-xplot.org (0.90.7.1-2) [universe]
fast tool to graph and visualize lots of data
xppaut (6.11b+1.dfsg-1) [universe]
Phase Plane Plus Auto: Solves many kinds of equations
xtide (2.13-1) [universe]
provides tide and current predictions
xtide-coastline (20020202-1) [universe]
coastline data for xtide
xtide-data (20100529-1) [universe]
Harmonics data for xtide
xtide-data-nonfree (20100529-1) [multiverse]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xyscan (3.31-3) [universe]
data thief for scientists
yade (1.10.0-1ubuntu1) [universe]
Platform for discrete element modeling
yagv (0.4~20130422.r5bd15ed+dfsg-1) [universe]
yet another G-code viewer
ygraph (0.16~cvs20090218-1.2ubuntu1) [universe]
plot and animate data sets
yorick-av (0.0.3-3build2) [universe]
write movies from Yorick in various formats
yorick-full (2.2.03+dfsg-2ubuntu1) [universe]
full installation of the Yorick interpreter and add-ons
yorick-gy (0.0.5-1) [universe]
GObject introspection and Gtk bindings for Yorick
yorick-gyoto (0.1.0-2ubuntu2) [universe]
General relativistic geodesic integration for the Yorick language
yorick-mira (0.9.10+dfsg-1) [universe]
optical interferometry image reconstruction within Yorick
yorick-mpeg (0.1-3) [universe]
MPEG output support for the Yorick language
yorick-mpy-common (2.2.03+dfsg-2ubuntu1) [universe]
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.03+dfsg-2ubuntu1) [universe]
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.03+dfsg-2ubuntu1) [universe]
Message Passing Yorick (OpenMPI build)
yorick-svipc (0.15-2) [universe]
interprocess communication (shared memory...) for Yorick
yorick-ygsl (1.1.1-3) [universe]
GSL special functions plugin for the Yorick language
yorick-ynfft (1.0.2-2) [universe]
nonequispaced fast Fourier transform for Yorick
z88 (13.0.0+dfsg2-3) [universe]
Finite Element Analysis Program - runtime
zalign (0.9.1-1build1) [universe]
parallel local alignment of biological sequences
zegrapher (2.0-4) [universe]
plotting mathematical functions and sequences on the plane
zimpl (3.3.2-1) [universe]
mathematical modeling language for optimization problems
ztex-bmp (20120314-2) [universe]
universal macro processor
zygrib (6.2.3-1) [universe]
Weather data visualization, GRIB file viewer
zygrib-maps (6.2.3-1) [universe]
Maps for zyGrib weather visualization