» Ubuntu » Packages » zesty » science

Software Packages in "zesty", Subsection science

3depict (0.0.19-1) [universe]
visualisation and analysis for single valued point data
abacas (1.3.1-3) [universe]
Algorithm Based Automatic Contiguation of Assembled Sequences
abinit (8.0.8-1) [universe]
package for electronic structure calculations
abinit-doc (8.0.8-1) [universe]
package for electronic structure calculations (Documentation)
abyss (2.0.2-2) [multiverse]
de novo, parallel, sequence assembler for short reads
acedb-other (4.9.39+dfsg.01-6build1) [universe]
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.01-6build1) [universe]
multiple sequence alignment editor
acedb-other-dotter (4.9.39+dfsg.01-6build1) [universe]
visualisation of sequence similarity
aces3 (3.0.8-5.1build1) [universe]
Advanced Concepts in Electronic Structure III
aces3-data (3.0.8-5.1build1) [universe]
Advanced Concepts in Electronic Structure III
achilles (2-8.2) [universe]
An artificial life and evolution simulator
adapterremoval (2.2.0-1) [universe]
rapid adapter trimming, identification, and read merging of gene sequences
adapterremoval-examples (2.2.0-1) [universe]
rapid adapter trimming, identification, and read merging (example data)
adun-core (0.81-9build1) [universe]
Molecular Simulator
adun.app (0.81-9build1) [universe]
Molecular Simulator for GNUstep (GUI)
aegean (0.15.2+dfsg-1) [universe]
integrated genome analysis toolkit
aeskulap (0.2.2b1+git20161206-1) [universe]
medical image viewer and DICOM network client
aevol (4.4-1) [universe]
digital genetics model to run Evolution Experiments in silico
aghermann (1.1.2-1) [universe]
Sleep-research experiment manager
alfa (1.0-2build1) [universe]
Automated Line Fitting Algorithm
algotutor (0.8.6-1) [universe]
program for observing the intermediate steps of algorithm
alien-hunter (1.7-5) [universe]
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.3.1-4build2) [universe]
program to perform phylogeny-based association and localization analysis
altree-examples (1.3.1-4build2) [universe]
example files for ALTree
amap-align (2.2-6) [universe]
Protein multiple alignment by sequence annealing
ampliconnoise (1.29-5build2) [universe]
removal of noise from 454 sequenced PCR amplicons
andi (0.10-2) [universe]
Efficient Estimation of Evolutionary Distances
anfo (0.98-5) [universe]
Short Read Aligner/Mapper from MPG
ants (2.1.0-5ubuntu1) [universe]
advanced normalization tools for brain and image analysis
aoflagger (2.9.0-1) [universe]
Find RFI in radio astronomical observations
apbs (1.4-1) [universe]
Adaptive Poisson Boltzmann Solver
apertium-af-nl (0.2.0~r58256-1) [universe]
Apertium translation data for the Afrikaans-Dutch pair
apertium-apy (0.9.1~r343-2) [universe]
Apertium APY service
apertium-arg (0.1.2~r65494-1) [universe]
Apertium single language data for Aragonese
apertium-arg-cat (0.1.0~r64925-1) [universe]
Apertium translation data for the Aragonese-Catalan pair
apertium-br-fr (0.5.0~r61325-2) [universe]
Apertium linguistic data to translate between Breton and French
apertium-ca-it (0.1.1~r57554-1) [universe]
Apertium translation data for the Catalan-Italian pair
apertium-cat (1.0.0~r65787-1) [universe]
Apertium single language data for Catalan
apertium-cy-en (0.1.1~r57554-3) [universe]
Apertium translation data for the Welsh-English pair
apertium-dan (0.5.0~r67099-1) [universe]
Apertium single language data for Danish
apertium-dan-nor (1.3.0~r67099-1) [universe]
Apertium translation data for the Danish-Norwegian pair
apertium-dev (3.4.0~r61013-5) [universe]
Development tools and library for Apertium
apertium-en-gl (0.5.2~r57551-1) [universe]
Apertium translation data for the English-Galician pair
apertium-eo-en (1.0.0~r63833-1) [universe]
Apertium linguistic data to translate between Esperanto and English
apertium-eo-fr (0.9.0~r57551-1) [universe]
Apertium translation data for the Esperanto-French pair
apertium-es-ast (1.1.0~r51165-1) [universe]
Apertium translation data for the Spanish-Asturian pair
apertium-es-it (0.1.0~r51165-1) [universe]
Apertium translation data for the Spanish-Italian pair
apertium-eu-en (0.3.1~r56205-1) [universe]
Apertium translation data for the Basque-English pair
apertium-fra (1.0.0~r65786-1) [universe]
Apertium single language data for French
apertium-fra-cat (1.1.0~r64309-1) [universe]
Apertium translation data for the French-Catalan pair
apertium-hbs (0.5.0~r68212-2) [universe]
Apertium single language data for Serbo-Croatian
apertium-hbs-eng (0.1.0~r57598-1) [universe]
Apertium translation data for the Serbo-Croatian - English pair
apertium-hbs-mkd (0.1.0~r57554-1) [universe]
Apertium translation data for the Serbo-Croatian-Macedonian pair
apertium-hbs-slv (0.1.0~r59294-1) [universe]
Apertium translation data for the Serbo-Croatian-Slovenian pair
apertium-hin (0.1.0~r59158-1) [universe]
Apertium single language data for Hindi
apertium-id-ms (0.1.1~r57551-1) [universe]
Apertium translation data for the Indonesian-Malay pair
apertium-is-sv (0.1.0~r56030-1) [universe]
Apertium translation data for the Icelandic-Swedish pair
apertium-isl (0.1.0~r65494-1) [universe]
Apertium single language data for Icelandic
apertium-isl-eng (0.1.0~r66083-1) [universe]
Apertium translation data for the Icelandic-English pair
apertium-ita (0.9.0~r72553-1) [universe]
Apertium single language data for Italian
apertium-kaz (0.1.0~r61338-1) [universe]
Apertium single language data for Kazakh
apertium-kaz-tat (0.2.1~r57554-1) [universe]
Apertium translation data for the Kazakh-Tatar pair
apertium-lex-tools (0.1.1~r66150-1) [universe]
Constraint-based lexical selection module
apertium-mk-bg (0.2.0~r49489-1) [universe]
Apertium translation data for the Macedonian-Bulgarian pair
apertium-mk-en (0.1.1~r57554-1) [universe]
Apertium translation data for the Macedonian-English pair
apertium-mlt-ara (0.2.0~r62623-1) [universe]
Apertium translation data for the Maltese-Arabic pair
apertium-nno (0.9.0~r69513-1) [universe]
Apertium single language data for Norwegian Nynorsk
apertium-nno-nob (1.1.0~r66076-1) [universe]
Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
apertium-nob (0.9.0~r69513-1) [universe]
Apertium single language data for Norwegian Bokmål
apertium-sme-nob (0.6.0~r61921-1) [universe]
Apertium translation data for the Northern Sami-Norwegian Bokmål pair
apertium-spa (0.1.0~r65494-1) [universe]
Apertium single language data for Spanish
apertium-spa-arg (0.4.0~r64399-1) [universe]
Apertium translation data for the Spanish-Aragonese pair
apertium-srd (0.9.0~r72792-1) [universe]
Apertium single language data for Sardinian
apertium-srd-ita (0.9.0~r72554-1) [universe]
Apertium translation data for the Sardinian-Italian pair
apertium-swe (0.7.0~r69513-1) [universe]
Apertium single language data for Swedish
apertium-swe-dan (0.7.0~r66063-1) [universe]
Apertium translation data for the Swedish-Danish pair
apertium-tat (0.1.0~r60887-1) [universe]
Apertium single language data for Tatar
apertium-urd (0.1.0~r61311-1) [universe]
Apertium single language data for Urdu
apertium-urd-hin (0.1.0~r64379-1) [universe]
Apertium translation data for the Urdu-Hindi pair
aragorn (1.2.38-1) [universe]
tRNA and tmRNA detection in nucleotide sequences
arb (6.0.6-1) [multiverse]
phylogenetic sequence analysis suite - main program
arb-common (6.0.6-1) [multiverse]
phylogenetic sequence analysis suite - common files
arden (1.0-3) [universe]
specificity control for read alignments using an artificial reference
ariba (2.7.1+ds-1ubuntu1) [universe]
Antibiotic Resistance Identification By Assembly
art-nextgen-simulation-tools (20160605+dfsg-2) [universe]
simulation tools to generate synthetic next-generation sequencing reads
art-nextgen-simulation-tools-profiles (20160605+dfsg-2) [universe]
profiles for art simulation tools
artemis (16.0.17+dfsg-1) [universe]
genome browser and annotation tool
artfastqgenerator (0.0.20150519-2) [universe]
outputs artificial FASTQ files derived from a reference genome
artfastqgenerator-examples (0.0.20150519-2) [universe]
ou7puts artificial FASTQ files derived from a reference genome (examples)
asdftool (1.2.1-1) [universe]
Command line tool to manipulate ASDF scientific data files
ask (1.1.1-1) [universe]
Adaptive Sampling Kit for big experimental spaces
astro-tasks (0.6ubuntu1) [universe]
Debian Astronomy Pure Blend (tasksel tasks)
astromatic (1.1) [universe]
Astronomical pipeline software collection
astrometry-data-2mass (1.1) [multiverse]
Astrometry.net 2MASS index files downloader
astrometry-data-2mass-00 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (2'-2.8')
astrometry-data-2mass-01 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (2.8'-4')
astrometry-data-2mass-02 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (4'-5.6')
astrometry-data-2mass-03 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (5.6'-8')
astrometry-data-2mass-04 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (8'-11')
astrometry-data-2mass-05 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (11'-16')
astrometry-data-2mass-06 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (16'-22')
astrometry-data-2mass-07 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (22'-30')
astrometry-data-2mass-08-19 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (30'-2000')
astrometry-data-tycho2 (2-3) [universe]
Astrometry.net Tycho-2 index files
astrometry-data-tycho2-07 (2-3) [universe]
Astrometry.net Tycho-2 index files (22'-30')
astrometry-data-tycho2-07-bigendian (2-3) [universe]
Astrometry.net Tycho-2 big endian index files (22'-30')
astrometry-data-tycho2-07-littleendian (2-3) [universe]
Astrometry.net Tycho-2 little endian index files (22'-30')
astrometry-data-tycho2-08 (2-3) [universe]
Astrometry.net Tycho-2 index files (30'-44')
astrometry-data-tycho2-08-bigendian (2-3) [universe]
Astrometry.net Tycho-2 big endian index files (30'-44')
astrometry-data-tycho2-08-littleendian (2-3) [universe]
Astrometry.net Tycho-2 little endian index files (30'-44')
astrometry-data-tycho2-09 (2-3) [universe]
Astrometry.net Tycho-2 index files (44'-60')
astrometry-data-tycho2-09-bigendian (2-3) [universe]
Astrometry.net Tycho-2 big endian index files (44'-60')
astrometry-data-tycho2-09-littleendian (2-3) [universe]
Astrometry.net Tycho-2 little endian index files (44'-60')
astrometry-data-tycho2-10-19 (2-3) [universe]
Astrometry.net Tycho-2 index files (60'-2000')
astrometry-data-tycho2-10-19-bigendian (2-3) [universe]
Astrometry.net Tycho-2 big endian index files (60'-2000')
astrometry-data-tycho2-10-19-littleendian (2-3) [universe]
Astrometry.net Tycho-2 little endian index files (60'-2000')
astrometry.net (0.70+dfsg-1) [universe]
Astrometry plate solver
astronomical-almanac (5.6-4) [universe]
astronomical almanac - calculate planet and star positions
atac (0~20150903+r2013-3) [universe]
genome assembly-to-assembly comparison
augustus (3.2.3+dfsg-1) [universe]
gene prediction in eukaryotic genomes
augustus-data (3.2.3+dfsg-1) [universe]
data files for AUGUSTUS
autodock (4.2.6-3) [universe]
analysis of ligand binding to protein structure
autodock-getdata (4.2.6-3) [universe]
instructions for getData to collect compounds
autodock-test (4.2.6-3) [universe]
test files for AutoDock
autodock-vina (1.1.2-3build5) [universe]
docking of small molecules to proteins
autodocktools (1.5.7-1) [multiverse]
GUI to help set up, launch and analyze AutoDock dockings
autogrid (4.2.6-3) [universe]
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.6-3) [universe]
test files for AutoGrid
avce00 (2.0.0-5) [universe]
Conversion of ESRI Arcinfo Vector Coverage in E00 format
avogadro (1.2.0-1build1) [universe]
Molecular Graphics and Modelling System
avogadro-data (1.2.0-1build1) [universe]
Molecular Graphics and Modelling System (Data Files)
aweather (0.8.1-1.1) [universe]
Advanced Weather Monitoring Program
axe-demultiplexer (0.3.2+dfsg1-1) [universe]
Trie-based DNA sequencing read demultiplexer
bagel (0.0~git20170109-1) [universe]
Computational Chemistry Package
bagel-data (0.0~git20170109-1) [universe]
Computational Chemistry Package (data files)
baitfisher (1.0+dfsg-1) [universe]
software package for designing hybrid enrichment probes
ballview (1.4.3~beta1-3) [universe]
free molecular modeling and molecular graphics tool
bamtools (2.4.1+dfsg-1) [universe]
toolkit for manipulating BAM (genome alignment) files
barrnap (0.7+dfsg-2) [universe]
rapid ribosomal RNA prediction
bart (0.4.00-1) [universe]
tools for computational magnetic resonance imaging
bauble (0.9.7-2.1) [universe]
biodiversity collection manager software application
bcftools (1.3.1-1) [universe]
genomic variant calling and manipulation of VCF/BCF files
beagle (4.1~160727-86a+dfsg-1) [universe]
Genotype calling, genotype phasing and imputation of ungenotyped markers
beast-mcmc (1.8.4+dfsg.1-1) [multiverse]
Bayesian MCMC phylogenetic inference
beast2-mcmc (2.4.4+dfsg-1) [universe]
Bayesian MCMC phylogenetic inference
bedops (2.4.20+dfsg-2) [universe]
high-performance genomic feature operations
bedtools (2.25.0-1) [universe]
suite of utilities for comparing genomic features
bedtools-test (2.25.0-1) [universe]
test data for the bedtools package
berkeley-express (1.5.1-3build1) [universe]
Streaming quantification for high-throughput sequencing
bibus (1.5.2-4) [universe]
bibliographic database
bio-eagle (2.3-3) [universe]
Haplotype phasing within a genotyped cohort or using a phased reference panel
bio-eagle-examples (2.3-3) [universe]
Examples for bio-eagle
bio-rainbow (2.0.4-1) [universe]
clustering and assembling short reads for bioinformatics
biogenesis (0.8-2) [universe]
artificial life program that simulates evolution of organisms
biomaj (1.2.3-11) [universe]
biological data-bank updater
biomaj-properties (1.2.3-11) [universe]
biological data-bank updater - example properties files
biomaj-watcher (1.2.2-4) [multiverse]
biological data-bank updater - web interface
bioperl (1.7.1-2) [universe]
Perl tools for computational molecular biology
bioperl-run (1.7.1-3) [universe]
BioPerl wrappers: scripts
biosig-tools (1.3.0-2.2 [amd64, arm64, armhf, i386, ppc64el, s390x], 1.3.0-2.1build2 [powerpc]) [universe]
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-7) [universe]
utilities for biological sequence analysis
bist (0.5.2-1.1) [universe]
chemical drawing tool
bkchem (0.13.0-5) [universe]
Chemical structures editor
blasr (5.3+0-1) [universe]
mapping single-molecule sequencing reads
blast2 (1:2.6.0-1) [universe]
transitional dummy package to ncbi-blast+-legacy
blimps-utils (3.9-1) [multiverse]
blocks database improved searcher
blinken (4:16.12.3-0ubuntu1) [universe]
KDE version of the Simon electronic memory game
bmt (0.6-1) [universe]
software analysis benchmarking toolkit
bodr (10-1) [universe]
Blue Obelisk Data Repository
boinc-app-seti (8.00~svn3363-4) [universe]
SETI@home application for the BOINC client
boinc-app-seti-graphics (8.00~svn3363-4) [universe]
SETI@home application for the BOINC client (with graphics)
boolector (1.5.118.6b56be4.121013-1) [universe]
SMT solver for bit-vectors and arrays
bowtie (1.1.2-6) [universe]
Ultrafast memory-efficient short read aligner
bowtie-examples (1.1.2-6) [universe]
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.3.0-2ubuntu1) [universe]
ultrafast memory-efficient short read aligner
bowtie2-examples (2.3.0-2ubuntu1) [universe]
Examples for bowtie2
boxshade (3.3.1-10) [universe]
Pretty-printing of multiple sequence alignments
bppphyview (0.3.0-1.1) [universe]
Bio++ Phylogenetic Viewer
bppsuite (2.2.0-0.1) [universe]
Bio++ program suite
brig (0.95+dfsg-1) [universe]
BLAST Ring Image Generator
bwa (0.7.15-3) [universe]
Burrows-Wheeler Aligner
cafeobj (1.5.5-1) [universe]
new generation algebraic specification and programming language
cafeobj-mode (1.5.5-1) [universe]
Emacs major mode for editing CafeOBJ source code
caffe-tools-cpu (1.0.0~rc4-1ubuntu1) [universe]
Tools for fast, open framework for Deep Learning (CPU_ONLY)
caffe-tools-cuda (1.0.0~rc4-1) [multiverse]
Tools for fast, open framework for Deep Learning (CUDA)
cain (1.10+dfsg-2) [universe]
simulations of chemical reactions
cain-examples (1.10+dfsg-2) [universe]
examples for cain
cain-solvers (1.10+dfsg-2) [universe]
solvers for cain
calculix-ccx (2.11-1) [universe]
Three-Dimensional Structural Finite Element Program
calculix-cgx (2.11+dfsg-1) [universe]
Calculix cgx is a 3-dimensional pre- and post-processor for fem
camitk-actionstatemachine (4.0.4-2ubuntu2) [universe]
pipeline replay application for the CamiTK library
camitk-config (4.0.4-2ubuntu2) [universe]
Computer Assisted Medical Intervention Tool Kit - config
camitk-imp (4.0.4-2ubuntu2) [universe]
workbench application for the CamiTK library
casacore-data-igrf (10-1) [universe]
International Geomagnetic Reference Field data for casacore
casacore-data-lines (0+git2016.11.26-2) [universe]
Table of spectral line frequencies for casacore
casacore-data-observatories (0+git2016.11.02-1) [universe]
Table of radio observatory coordinates for casacore
casacore-data-sources (2-2) [universe]
Table of ICRF reference source coordinates for casacore
casacore-data-tai-utc (1.1) [universe]
Difference table between TAI and UTC for casacore
casacore-tools (2.2.0-2) [universe]
Tools built with CASA
cassbeam (1.1-1) [universe]
Cassegrain antenna modelling
cassiopee (1.0.5-1) [universe]
index and search tool in genomic sequences
cba (0.3.6-4.1build1) [universe]
Continuous Beam Analysis
cbflib-bin (0.9.2.2-1) [universe]
utilities to manipulate CBF files
cbmc (5.6-1) [universe]
bounded model checker for C and C++ programs
cclib (1.3.1-1) [universe]
Parsers and algorithms for computational chemistry
cclib-data (1.1-1) [multiverse]
Parsers and algorithms for computational chemistry (data files)
cd-hit (4.6.6-2) [universe]
suite of programs designed to quickly group sequences
cdbfasta (0.99-20100722-3) [universe]
Constant DataBase indexing and retrieval tools for multi-FASTA files
cernlib (20061220+dfsg3-4.3) [universe]
CERNLIB data analysis suite - general use metapackage
cernlib-core (20061220+dfsg3-4.3) [universe]
CERNLIB data analysis suite - main libraries and programs
cernlib-core-dev (20061220+dfsg3-4.3) [universe]
CERNLIB data analysis suite - core development files
cernlib-extras (20061220+dfsg3-4.3) [universe]
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-3) [universe]
CERNLIB Monte Carlo libraries
cg3 (0.9.9~r11624-1ubuntu1) [universe]
Tools for using the 3rd edition of Constraint Grammar (CG-3)
cgns-convert (3.3.0-4) [universe]
CFD General Notation System - Conversion tools
cgview (0.0.20100111-2) [universe]
Circular Genome Viewer
checkit-tiff (0.2.3-1) [universe]
conformance checker for baseline TIFFs
chemical-structures (2.2.dfsg.0-12) [universe]
set of molecular structures in open formats
chemps2 (1.8.3-2) [universe]
Executable to call libchemps2-2 from the command line
chemtool (1.6.14-1) [universe]
chemical structures drawing program
chimeraslayer (20101212+dfsg1-1) [universe]
detects likely chimeras in PCR amplified DNA
choreonoid (1.5.0+dfsg-0.1build2) [universe]
Integrated robotics GUI environment
choreonoid-data (1.5.0+dfsg-0.1build2) [universe]
Integrated robotics GUI environment - shared data
choreonoid-plugins-base (1.5.0+dfsg-0.1build2) [universe]
Integrated robotics GUI environment - core plug-ins
circlator (1.4.1-1) [universe]
circularize genome assemblies
circos (0.69.4+dfsg-1) [universe]
plotter for visualizing data
circos-tools (0.22-1) [universe]
plotter for visualizing data - helper utilities
ckon (0.7.1-3build4) [universe]
automatic build tool for ROOT data analysis software
clearcut (1.0.9-1) [universe]
extremely efficient phylogenetic tree reconstruction
clonalframe (1.2-5) [universe]
inference of bacterial microevolution using multilocus sequence data
clustalo (1.2.4-1) [universe]
General purpose multiple sequence alignment program for proteins
clustalw (2.1+lgpl-5) [universe]
global multiple nucleotide or peptide sequence alignment
clustalx (2.1+lgpl-5) [multiverse]
Multiple alignment of nucleic acid and protein sequences (graphical interface)
cluster3 (1.52a-1) [multiverse]
Reimplementation of the Eisen-clustering software
cmor-tables (3.2-1) [universe]
MIP tables for the Climate Model Output Rewriter library
cmtk (3.3.1-1.1) [universe]
Computational Morphometry Toolkit
code-aster-gui (1.13.1-2) [universe]
Graphical user interface for Code_Aster - client
code-aster-run (1.13.1-2) [universe]
Graphical user interface for Code_Aster - server
code-saturne (4.3.3+repack-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (4.3.3+repack-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (4.3.3+repack-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-include (4.3.3+repack-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - includes
codonw (1.4.4-3) [universe]
Correspondence Analysis of Codon Usage
coinor-cbc (2.8.12-1build2) [universe]
Coin-or branch-and-cut mixed integer programming solver
coinor-clp (1.15.10-3) [universe]
Coin-or linear programming solver
coinor-csdp (6.1.1-1build1) [universe]
A software package for semidefinite programming
coinor-libcbc3 (2.8.12-1build2) [universe]
Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl1 (0.58.9-1build2) [universe]
COIN-OR Cut Generation Library
coinor-libclp1 (1.15.10-3) [universe]
Coin-or linear programming solver (shared libraries)
coinor-libcoinutils3v5 (2.9.15-4) [universe]
Coin-or collection of utility classes (binaries and libraries)
coinor-libdylp0 (1.6.0-1.1ubuntu2) [universe]
Linear programming solver using the dynamic simplex algorithm
coinor-libflopc++0v5 (1.0.6-3.1ubuntu3) [universe]
Formulation of Linear Optimization Problems in C++
coinor-libosi1v5 (0.106.9-2) [universe]
COIN-OR Open Solver Interface
coinor-libsymphony3 (5.6.1-1build2) [universe]
COIN-OR solver for mixed-integer linear programs (shared libraries)
coinor-libvol0 (1.1.7-1) [universe]
Coin-or linear programming solver
coinor-symphony (5.6.1-1build2) [universe]
COIN-OR solver for mixed-integer linear programs
comet-ms (2014022-3) [universe]
Tandem mass spectrometry (MS/MS) search engine
concavity (0.1+dfsg.1-1) [universe]
predictor of protein ligand binding sites from structure and conservation
connectome-workbench (1.2.3+git3-g7b83782-1) [universe]
brain visualization, analysis and discovery tool
conservation-code (20110309.0-5) [universe]
protein sequence conservation scoring tool
cp2k (4.1-1) [universe]
Ab Initio Molecular Dynamics
cp2k-data (4.1-1) [universe]
Ab Initio Molecular Dynamics (data files)
cpl-plugin-amber (4.3.4+dfsg-1build2) [universe]
ESO data reduction pipeline for the AMBER instrument
cpl-plugin-amber-calib (4.3.4+dfsg-1build2) [universe]
ESO data reduction pipeline calibration data downloader for AMBER
cpl-plugin-fors (5.3.11+dfsg-1) [universe]
ESO data reduction pipeline for the FORS1/2 instruments
cpl-plugin-fors-calib (5.3.11+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for FORS2
cpl-plugin-giraf (2.15+dfsg-1build1) [universe]
ESO data reduction pipeline for the GIRAFFE instrument
cpl-plugin-giraf-calib (2.15+dfsg-1build1) [universe]
ESO data reduction pipeline calibration data downloader for GIRAFFE
cpl-plugin-hawki (1.8.21+dfsg-1build1) [universe]
ESO data reduction pipeline for the HAWK-I instrument
cpl-plugin-hawki-calib (1.8.21+dfsg-1build1) [universe]
ESO data reduction pipeline calibration data downloader for HAWK-I
cpl-plugin-kmos (1.4.0+dfsg-1) [universe]
ESO data reduction pipeline for the KMOS instrument
cpl-plugin-kmos-calib (1.4.0+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for KMOS
cpl-plugin-muse (1.6.2+dfsg-1) [universe]
ESO data reduction pipeline for the MUSE instrument
cpl-plugin-muse-calib (1.6.2+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for MUSE
cpl-plugin-naco (4.4.1+dfsg-3build1) [universe]
ESO data reduction pipeline for the NaCo instrument
cpl-plugin-naco-calib (4.4.1+dfsg-3build1) [universe]
ESO data reduction pipeline NaCo calibration data downloader
cpl-plugin-sinfo (2.9.0+dfsg-1build1) [universe]
ESO data reduction pipeline for the SINFONI instrument
cpl-plugin-sinfo-calib (2.9.0+dfsg-1build1) [universe]
ESO data reduction pipeline calibration data downloader for SINFONI
cpl-plugin-uves (5.7.0+dfsg-1build2) [universe]
ESO data reduction pipeline for the UVES instrument
cpl-plugin-uves-calib (5.7.0+dfsg-1build2) [universe]
ESO data reduction pipeline calibration data downloader for UVES
cpl-plugin-vimos (3.1.7+dfsg-1build1) [universe]
ESO data reduction pipeline for the VIMOS instrument
cpl-plugin-vimos-calib (3.1.7+dfsg-1build1) [universe]
ESO data reduction pipeline calibration data downloader for VIMOS
cpl-plugin-visir (4.3.0+dfsg1-1build1) [universe]
ESO data reduction pipeline for the VISIR instrument
cpl-plugin-visir-calib (4.3.0+dfsg1-1build1) [universe]
ESO data reduction pipeline calibration data downloader for VISIR
cpl-plugin-xshoo (2.8.4+dfsg-3) [universe]
ESO data reduction pipeline for the XSHOOTER instrument
cpl-plugin-xshoo-calib (2.8.4+dfsg-3) [universe]
ESO data reduction pipeline calibration data downloader for XSHOOTER
crac (2.5.0+dfsg-1) [universe]
integrated RNA-Seq read analysis
critterding (1.0-beta12.1-1.3) [universe]
Evolving Artificial Life
ctsim (5.2.0-4) [universe]
Computed tomography simulator
ctsim-help (5.2.0-4) [universe]
Online help file for CTSim
cufflinks (2.2.1-3build1) [multiverse]
Transcript assembly, differential expression and regulation for RNA-Seq
cutadapt (1.12-1) [universe]
Clean biological sequences from high-throughput sequencing reads
cwltool (1.0.20170114120503-1) [universe]
Common workflow language reference implementation
daligner (1.0+20161119-1) [universe]
local alignment discovery between long nucleotide sequencing reads
dans-gdal-scripts (0.24-1build1) [universe]
GDAL contributed tools by Geographic Information Network of Alaska
dascrubber (0~20160601-2) [universe]
alignment-based scrubbing pipeline for DNA sequencing reads
datalad (0.4.1-1) [universe]
data files crawler and data distribution
dawg (1.2-1) [universe]
program to simulate the evolution of recombinant DNA sequences
dazzdb (1.0+20161112-2) [universe]
manage nucleotide sequencing read data
dcm2niix (1.0.20161101-1) [universe]
next generation DICOM to NIfTI converter
dcmtk (3.6.1~20160216-4) [universe]
OFFIS DICOM toolkit command line utilities
(0.6ubuntu1) [universe]
Debian Astronomy Pure Blends Logo
dh-r (20161219) [universe]
Debian helper tools for packaging R libraries
dialign (2.2.1-9) [universe]
Segment-based multiple sequence alignment
dialign-tx (1.0.2-9) [universe]
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-9) [universe]
Segment-based multiple sequence alignment (data files)
diamond-aligner (0.8.35+dfsg-1) [universe]
accelerated BLAST compatible local sequence aligner
dicomnifti (2.32.1-1) [universe]
converts DICOM files into the NIfTI format
dicompyler (0.4.2-3) [universe]
radiation therapy research platform
diet-agent (2.8.0-1ubuntu5) [universe]
DIET grid middleware - agent
dimbl (0.15-1) [universe]
Distributed Memory Based Learner
dindel (1.01+dfsg-4build1) [universe]
determines indel calls from short-read data
discosnp (1.2.6-1) [universe]
discovering Single Nucleotide Polymorphism from raw set(s) of reads
disulfinder (1.2.11-6) [universe]
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-6) [universe]
data files for predictor of disulfide bonds in proteins
dnaclust (3-4build2) [universe]
tool for clustering millions of short DNA sequences
doris (4.06~beta2+dfsg-3) [multiverse]
Delft object-oriented radar interferometric software
dozzaqueux (3.50-1) [universe]
simulator for chemical mixtures
dozzaqueux-data (3.50-1) [universe]
databases for chemical mixtures
dpuser (3.3+p1+dfsg-1build1) [universe]
Interactive language for handling numbers, strings, and matrices
drawxtl (5.5-3build1) [universe]
crystal structure viewer
drslib (0.3.0a3-5build1) [universe]
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.4 [amd64, arm64, armhf, i386, ppc64el, s390x], 5.8-9.1ubuntu2 [powerpc]) [universe]
Software for Semidefinite Programming
dssp (2.2.1-3ubuntu1) [universe]
protein secondary structure assignment based on 3D structure
dwgsim (0.1.11-3) [universe]
short sequencing read simulator
dx (1:4.4.4-9build1 [amd64, arm64, armhf, i386, ppc64el, s390x], 1:4.4.4-9 [powerpc]) [universe]
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.4.0-3) [universe]
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-3) [universe]
Program to read/write Arcinfo compressed E00 files
ea-utils (1.1.2+dfsg-4) [universe]
command-line tools for processing biological sequencing data
easychem (0.6-8) [universe]
Draw high-quality molecules and 2D chemical formulas
ecaccess (4.0.1-1) [universe]
clients to access ECMWF facilities
ecopcr (0.5.0+dfsg-1) [universe]
estimate PCR barcode primers quality
edfbrowser (1.58-1) [universe]
viewer for biosignal storage files such as bdf and edf
edtsurf (0.2009-3) [universe]
triangulated mesh surfaces for protein structures
eficas (6.4.0-1-1.2) [universe]
Graphical editor for Code Aster command files
eigensoft (6.1.4+dfsg-1) [multiverse]
reduction of population bias for genetic analyses
elastix (4.8-10build1) [universe]
toolbox for rigid and nonrigid registration of images
elk-lapw (4.0.15-2) [universe]
All-Electron Density-Functional Electronic Structure Code
elki (0.7.1-2) [universe]
Data mining algorithm development framework
elki-dev (0.7.1-2) [universe]
Data mining algorithm development framework - development files
embassy-domainatrix (0.1.660-1) [universe]
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.660-1) [universe]
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.660-1) [universe]
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.69.660-1) [multiverse]
EMBOSS conversions of the programs in the phylip package
emboss (6.6.0+dfsg-6) [universe]
European molecular biology open software suite
emboss-data (6.6.0+dfsg-6) [universe]
data files for the EMBOSS package
emboss-explorer (2.2.0-8) [universe]
web-based GUI to EMBOSS
engauge-digitizer (9.7+ds.1-1) [universe]
interactively extracts numbers from bitmap graphs or maps
ent (1.2debian-1) [universe]
pseudorandom number sequence test program
epigrass (2.4.7-1ubuntu1) [universe]
scientific tool for simulations and scenario analysis in network epidemiology
epsilon-bin (0.9.2+dfsg-2) [universe]
Library for wavelet image compression - tools
ergo (3.5-1) [universe]
Quantum chemistry program for large-scale calculations
eso-midas (15.09pl1.0-2build1) [universe]
European Southern Observatory Munich Image Data Analysis System
eso-pipelines (1.1) [universe]
ESO VLT Instrument pipeline collection
esorex (3.12.3-1build1) [universe]
Execution Tool for European Southern Observatory pipelines
esys-particle (2.3.4+dfsg1-4) [universe]
Software for particle-based numerical modelling. MPI version.
etsf-io (1.0.4-1.1) [universe]
Binary tools to check, merge and read ETSF files
exonerate (2.4.0-2) [universe]
generic tool for pairwise sequence comparison
expeyes (4.2.1+dfsg-1) [universe]
hardware & software framework for developing science experiments
expeyes-clib (4.2.1+dfsg-1) [universe]
hardware & software framework for developing science experiments
falcon (1.8.6-1) [universe]
diploid-aware genome assembly of single-molecule sequencing reads
fastahack (0.0+20160702-1) [universe]
utility for indexing and sequence extraction from FASTA files
fastaq (3.14.0-1) [universe]
FASTA and FASTQ file manipulation tools
fastdnaml (1.2.2-11) [universe]
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix100+dfsg-1) [universe]
faster version of pedigree programs of Linkage
fastlink-doc (4.1P-fix100+dfsg-1) [universe]
Some papers about fastlink
fastml (3.1-3) [universe]
maximum likelihood ancestral amino-acid sequence reconstruction
fastqc (0.11.5+dfsg-6) [universe]
quality control for high throughput sequence data
fastqtl (2.184+dfsg-5) [universe]
Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
fasttree (2.1.9-1) [universe]
phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit (0.0.14-3) [universe]
FASTQ/A short nucleotide reads pre-processing tools
fcc (2.8-1) [universe]
Script to compile C/C++ programs and link to Fortran libraries
feedgnuplot (1.40-1) [universe]
Pipe-oriented frontend to Gnuplot
ffindex (0.9.9.7-3ubuntu1) [universe]
simple index/database for huge amounts of small files
figtree (1.4.2+dfsg-2) [universe]
graphical phylogenetic tree viewer
filo (1.1.0-3) [universe]
FILe and stream Operations
fitgcp (0.0.20130418-2) [universe]
fitting genome coverage distributions with mixture models
fitscut (1.4.4-4build4) [universe]
Extract cutouts from FITS image format files
fitsh (0.9.2-1) [universe]
Software package for astronomical image processing
fitspng (0.3.5-1build1) [universe]
FITS to PNG converter
fitsverify (4.18-1build2) [universe]
FITS File Format-Verification Tool
fityk (1.3.0-1) [universe]
general-purpose nonlinear curve fitting and data analysis
flexbar (2.50-2) [universe]
flexible barcode and adapter removal for sequencing platforms
flextra (5.0-6) [universe]
Trajectory model for tracing air transport phenomena
fml-asm (0.1-2) [universe]
tool for assembling Illumina short reads in small regions
foma-bin (0.9.18+r243-1build1) [universe]
Xerox-compatible finite-state compiler - library
form (4.1-1) [universe]
Symbolic manipulation system
fractalnow (0.8.1-1.1) [universe]
Fast, advanced fractal generator
(1.4.77-1.2) [universe]
Free42 is a re-implementation of the HP-42S calculator
freecad (0.16+dfsg2-3) [universe]
Extensible Open Source CAx program (alpha)
freecontact (1.0.21-4build3) [universe]
fast protein contact predictor
freediams (0.9.4-1) [universe]
pharmaceutical drug prescription and interaction manager
freemedforms-common-resources (0.9.4-1) [universe]
common data for the FreeMedForms project applications
freemedforms-emr (0.9.4-1) [universe]
electronic medical record manager
freemedforms-emr-resources (0.9.4-1) [universe]
data for the FreeMedForms EMR
freemedforms-freedata (0.9.4-1) [universe]
free extra-data for the FreeMedForms project
freemedforms-i18n (0.9.4-1) [universe]
translations of the FreeMedForms project
freemedforms-libs (0.9.4-1) [universe]
common libs for the FreeMedForms project
freemedforms-project (0.9.4-1) [universe]
FreeMedForms project
freemedforms-theme (0.9.4-1) [universe]
theme for the FreeMedForms project
frog (0.13.7-1) [universe]
tagger and parser for natural languages (runtime)
frogdata (0.13-1) [universe]
Data files for Frog
fsa (1.15.9+dfsg-3) [universe]
Fast Statistical Alignment of protein, RNA or DNA sequences
fsm-lite (1.0-2) [universe]
frequency-based string mining (lite)
ftools-fv (5.4+dfsg-2build1) [universe]
Tool for viewing and editing FITS format files
ftools-pow (5.4+dfsg-2build1) [universe]
Curve plotting and image display interface tool
funtools (1.4.7-1) [universe]
Minimal buy-in FITS utility package
fxt-tools (0.3.2-2) [universe]
Multithreaded tracing library
g3data (1:1.5.3-2.1) [universe]
extract data from scanned graphs
gabedit (2.4.8-3) [universe]
graphical user interface to Ab Initio packages
galileo (0.5.1-4) [universe]
Utility to securely synchronize a Fitbit device with the Fitbit web service
galileo-daemon (0.5.1-4) [universe]
Utility to securely synchronize a Fitbit device - daemon
gamgi (0.17.1-1) [universe]
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.17.1-1) [universe]
General Atomistic Modelling Graphic Interface (data)
garli (2.1-1) [universe]
phylogenetic analysis of molecular sequence data using maximum-likelihood
garli-examples (2.1-1) [universe]
phylogenetic analysis of molecular sequence data using maximum-likelihood (examples)
garlic (1.6-1.1) [universe]
A visualization program for biomolecules
gasic (0.0.r19-1) [universe]
genome abundance similarity correction
gausssum (3.0.1.1-1) [universe]
parse and display Gaussian, GAMESS, and etc's output
gazebo7 (7.5.0+dfsg-1) [universe]
Open Source Robotics Simulator - Binaries
gazebo7-common (7.5.0+dfsg-1) [universe]
Open Source Robotics Simulator - Shared files
gazebo7-plugin-base (7.5.0+dfsg-1) [universe]
Open Source Robotics Simulator - base plug-ins
gbrowse (2.54+dfsg-7build1) [universe]
GMOD Generic Genome Browser
gbrowse-calign (2.54+dfsg-7build1) [universe]
CAlign helper
gbrowse-data (2.54+dfsg-7build1) [universe]
Sample data to use GBrowse
gbutils (5.6.8-1build1) [universe]
utilities for command line econometrics
gchempaint (0.14.15-1ubuntu1) [universe]
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.14.15-1ubuntu1) [universe]
lightweight crystal structures visualizer
gcu-bin (0.14.15-1ubuntu1) [universe]
GNOME chemistry utils (helper applications)
gcu-plugin (0.14.15-1ubuntu1) [universe]
GNOME chemistry utils (browser plugin)
gcx (1.3-1.1) [universe]
astronomical image processing and photometry gtk+ application
gdal-bin (2.1.2+dfsg-3) [universe]
Geospatial Data Abstraction Library - Utility programs
gdis (0.90-5) [universe]
molecular and crystal model viewer
gdis-data (0.90-5) [universe]
molecular and crystal model viewer (data files)
gdl-astrolib (2016.11.10+dfsg-1) [universe]
Low-level astronomy software for GDL
gdl-coyote (2016.11.13-1) [universe]
GDL library from D. Fannings IDL courses
gdl-mpfit (1.84+2016.05.19-1) [universe]
Robust non-linear least squares curve fitting for GDL
gdpc (2.2.5-6) [universe]
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-6) [universe]
example files for the gdpc program
geant321 (1:3.21.14.dfsg-11) [universe]
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-11) [universe]
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-10fakesync1) [universe]
Periodic Table viewer
genometools (1.5.9+ds-4ubuntu1) [universe]
versatile genome analysis toolkit
genometools-common (1.5.9+ds-4ubuntu1) [universe]
shared data files for GenomeTools
gentle (1.9+cvs20100605+dfsg1-6) [multiverse]
suite to plan genetic cloning
geographiclib-tools (1.46-2) [universe]
C++ library to solve some geodesic problems -- tools
geotiff-bin (1.4.2-2build1) [universe]
GeoTIFF (geografic enabled TIFF) library -- tools
getdata (0.2-1) [universe]
management of external databases
gff2aplot (2.0-8) [universe]
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-5) [universe]
produces PostScript graphical output from GFF-files
gfsview (20121130+dfsg-2build2) [universe]
graphical viewer for Gerris simulation files
gfsview-batch (20121130+dfsg-2build2) [universe]
batch-version of viewer for Gerris simulation files
ghkl (5.0.0.2173-2ubuntu1) [universe]
diffractometer computation control application
giella-core (0.1.1~r129227+svn121148-1) [universe]
GTCORE files for building Giellatekno language packages
giella-sme (0.0.20150917~r121176-1) [universe]
Giellatekno single language data for North Saami
giella-sme-dev (0.0.20150917~r121176-1) [universe]
Giellatekno single language data for North Saami (dev extras)
giira (0.0.20140625-1) [universe]
RNA-Seq driven gene finding incorporating ambiguous reads
ginga (2.6.1-1ubuntu1) [universe]
Astronomical image viewer
ginkgocadx (3.8.4-1) [universe]
Medical Imaging Software and complete DICOM Viewer
glam2 (1064-3) [universe]
gapped protein motifs from unaligned sequences
glueviz (0.9.1+dfsg-1) [universe]
Linked data visualization
gmap (2017-01-14-1) [multiverse]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (5.3.1+dfsg-2) [universe]
Generic Mapping Tools
gmt-common (5.3.1+dfsg-2) [universe]
Generic Mapping Tools - Architecture-independent files
gmt-dcw (1.1.2-2) [universe]
Digital Chart of the World (DCW) for GMT
gmt-gshhg (2.3.6-2) [universe]
Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
gmt-gshhg-full (2.3.6-2) [universe]
Full resolution coastlines for the Generic Mapping Tools
gmt-gshhg-high (2.3.6-2) [universe]
High resolution coastlines for the Generic Mapping Tools
gmt-gshhg-low (2.3.6-2) [universe]
Low resolution coastlines for the Generic Mapping Tools
gnuastro (0.2.33-1) [universe]
GNU Astronomy Utilities programs
gpaw (1.1.0-1build1) [universe]
DFT and beyond within the projector-augmented wave method
gpaw-data (0.9.20000-1) [universe]
gpaw datasets/setups
gperiodic (2.0.10-7) [universe]
periodic table application
gpx (2.5.2-1) [universe]
Gcode to x3g conversion post processor
gpx2shp (0.71.0-4build1) [universe]
convert GPS or GPX file to ESRI Shape file
gr-fcdproplus (3.7.25.4b6464b-2build2) [universe]
Funcube Dongle Pro Plus controller for GNU Radio
grads (3:2.1.0-2) [universe]
Grid Analysis and Display System for earth science data
graphlan (1.1-2) [universe]
circular representations of taxonomic and phylogenetic trees
grass (7.2.0-1) [universe]
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (7.2.0-1) [universe]
GRASS GIS core components
grass-doc (7.2.0-1) [universe]
GRASS GIS user documentation
grass-gui (7.2.0-1) [universe]
GRASS GIS graphical user interfaces
gravit (0.5.1+dfsg-2build1) [universe]
visually stunning gravity simulator
gravit-data (0.5.1+dfsg-2build1) [universe]
data files for Gravit
gri (2.12.23-10) [universe]
a language for scientific illustration
gri-el (2.12.23-10) [universe]
Emacs major-mode for gri, a language for scientific graphics
grinder (0.5.4-1) [universe]
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (2016.3-1) [universe]
Molecular dynamics simulator, with building and analysis tools
gromacs-data (2016.3-1) [universe]
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (2016.3-1) [universe]
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (2016.3-1) [universe]
Molecular dynamics sim, binaries for OpenMPI parallelization
gubbins (2.2.0-1) [universe]
phylogenetic analysis of genome sequences
gvb (1.4-1build1) [universe]
visual simulator of 1 and 2-dimensional vibrations
gwama (2.2.2+dfsg-1) [universe]
Genome-Wide Association Meta Analysis
gwyddion (2.47-1) [universe]
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.47-1) [universe]
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.47-1) [universe]
plugins for Gwyddion SPM analysis tool
gyoto (1.2.0-2ubuntu2) [universe]
General relativistic geodesic integration and ray-tracing
gyoto-bin (1.2.0-2ubuntu2) [universe]
General relativistic ray-tracing command-line interface
h5utils (1.12.1-6build1) [universe]
HDF5 files visualization tools
harminv (1.4-1) [universe]
extraction of complex frequencies and amplitudes from time series
harvest-tools (1.3-1) [universe]
archiving and postprocessing for reference-compressed genomic multi-alignments
hdf-compass (0.6.0-1) [universe]
viewer for HDF5 and related formats
hdf5-helpers (1.10.0-patch1+docs-3) [universe]
Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools (1.10.0-patch1+docs-3) [universe]
Hierarchical Data Format 5 (HDF5) - Runtime tools
herisvm (0.7.0-1) [universe]
machine learning tools for classification algorithms
herwig++ (2.6.0-1.1) [universe]
Multi-purpose event generator for high energy physics
herwig++-data (2.6.0-1.1) [universe]
Herwig++ Data
herwig++-dev (2.6.0-1.1) [universe]
Herwig++ development files
hfst (3.9.0~r4595-3) [universe]
Helsinki Finite-State Transducer Technology
hfst-ospell (0.4.0~r4643-4) [universe]
Spell checker library and tool based on HFST
hhsuite (3.0~beta2+dfsg-3) [universe]
sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data (3.0~beta2+dfsg-3) [universe]
sensitive protein sequence searching based on HMM-HMM alignment (data)
hidrd (0.2.0-11) [universe]
tools for parsing and generating HID report descriptors
hilive (0.3-2) [universe]
realtime alignment of Illumina reads
hisat2 (2.0.5-1) [universe]
graph-based alignment of short nucleotide reads to many genomes
hmmer (3.1b2+dfsg-5ubuntu1) [universe]
profile hidden Markov models for protein sequence analysis
hmmer2 (2.3.2-13) [universe]
profile hidden Markov models for protein sequence analysis
hmmer2-pvm (2.3.2-13) [universe]
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.5-2) [universe]
prints the date in latin
horae (071~svn537-2.1) [multiverse]
interactive graphical processing and analysis of EXAFS data
hpcc (1.4.3-1build3) [universe]
HPC Challenge benchmark
htcondor (8.4.11~dfsg.1-1) [universe]
distributed workload management system
hyphy-common (2.2.7+dfsg-1) [universe]
Hypothesis testing using Phylogenies (common files)
hyphy-mpi (2.2.7+dfsg-1) [universe]
Hypothesis testing using Phylogenies (MPI version)
hyphy-pt (2.2.7+dfsg-1) [universe]
Hypothesis testing using Phylogenies (pthreads version)
hyphygui (2.2.7+dfsg-1) [universe]
Hypothesis testing using Phylogenies (GTK+ gui)
idba (1.1.3-1) [universe]
iterative De Bruijn Graph De Novo short read assembler for transcriptome
ifeffit (2:1.2.11d-10.1) [multiverse]
Interactive XAFS analysis program
ifrit (4.1.2-5build1) [universe]
powerful tool for visualizing 3-dimensional data sets
igv (2.3.90+dfsg-1) [multiverse]
Integrative Genomics Viewer
imagej (1.51i+dfsg-1) [universe]
Image processing program inspired by NIH Image
imagevis3d (3.1.0-5) [universe]
desktop volume rendering application for large data
imview (1.1.9c-17build1 [amd64, arm64, armhf, i386, ppc64el, s390x], 1.1.9c-17 [powerpc]) [universe]
Image viewing and analysis application
indelible (1.03-2) [universe]
powerful and flexible simulator of biological evolution
indigo-utils (1.1.12-2) [universe]
Organic Chemistry Toolkit Utilities
infernal (1.1.2-1) [universe]
inference of RNA secondary structural alignments
ipig (0.0.r5-2build1) [universe]
integrating PSMs into genome browser visualisations
iqtree (1.5.3+dfsg-2) [universe]
efficient phylogenetic software by maximum likelihood
ismrmrd-schema (1.3.3-1build1) [universe]
schema for ISMRMRD
ismrmrd-tools (1.3.3-1build1) [universe]
command-line tools for ISMRMRD
itksnap (3.4.0-2build3) [universe]
semi-automatic segmentation of structures in 3D images
iva (1.0.6+ds-1) [universe]
iterative virus sequence assembler
jaligner (1.0+dfsg-4) [universe]
Smith-Waterman algorithm with Gotoh's improvement
jalview (2.7.dfsg-5) [universe]
multiple alignment editor
jblas (1.2.3-6) [universe]
fast linear algebra library for Java
jellyfish (2.2.6-1) [universe]
count k-mers in DNA sequences
jellyfish-examples (2.2.6-1) [universe]
count k-mers in DNA sequences (examples for testing)
jemboss (6.6.0+dfsg-6) [universe]
graphical user interface to EMBOSS
jmodeltest (2.1.10+dfsg-3) [universe]
HPC selection of models of nucleotide substitution
jmol (14.6.4+2016.11.05+dfsg1-3) [universe]
Molecular Viewer
jsamp (1.3.5-1) [universe]
Java Simple Application Messaging Protocol tool for VO
julia (0.4.7-6ubuntu1) [universe]
high-performance programming language for technical computing
julia-common (0.4.7-6ubuntu1) [universe]
high-performance programming language for technical computing (common files)
jupyter-notebook (4.2.3-4) [universe]
Jupyter interactive notebook
kalign (1:2.03+20110620-3) [universe]
Global and progressive multiple sequence alignment
kalzium (4:16.12.3-0ubuntu1) [universe]
periodic table and chemistry tools
kalzium-data (4:16.12.3-0ubuntu1) [universe]
data files for Kalzium
khmer-common (2.0+dfsg-8) [universe]
common files for the khmer project tools
kineticstools (0.6.1+20161222-1ubuntu1) [universe]
detection of DNA modifications
kineticstools-data (0.6.1+20161222-1ubuntu1) [universe]
detection of DNA modifications -- data files
king-probe (2.13.110909-2) [universe]
Evaluate and visualize protein interatomic packing
kissplice (2.4.0-p1-1) [universe]
Detection of various kinds of polymorphisms in RNA-seq data
klustakwik (2.0.1-1) [universe]
automatic sorting of the samples (spikes) into clusters
kmc (2.3+dfsg-5) [universe]
count kmers in genomic sequences
kmer (0~20150903+r2013-3) [universe]
suite of tools for DNA sequence analysis
konclude (0.6.2~dfsg-3) [universe]
tableau-based description logic reasoner for the semantic web
kraken (0.10.5~beta-2) [universe]
assigning taxonomic labels to short DNA sequences
kst (2.0.3-5build3) [universe]
scientific data plotting tool
kst-data (2.0.3-5build3) [universe]
set of data files for kst
kstars (4:16.12.3-0ubuntu1) [universe]
desktop planetarium for KDE
kstars-data (4:16.12.3-0ubuntu1) [universe]
data files for KStars desktop planetarium
kstars-data-extra-tycho2 (1.1r1-9.1) [universe]
Tycho-2 star catalog for KStars
kxterm (20061220+dfsg3-4.3) [universe]
CERNLIB data analysis suite - KUIP terminal emulator
lambda-align (1.0.1-2) [universe]
Local Aligner for Massive Biological DatA
lammps (0~20161109.git9806da6-7) [universe]
Molecular Dynamics Simulator
last-align (830-1) [universe]
genome-scale comparison of biological sequences
leaff (0~20150903+r2013-3) [universe]
biological sequence library utilities and applications
lefse (1.0.8-1) [universe]
determine features of organisms, clades, taxonomic units, genes
lhapdf-pdfsets-minimal (5.9.1-4build1) [universe]
Minimal PDF Sets of LHAPDF
libadios-bin (1.11.0-1build1) [universe]
ADIOS Adaptable IO system for simulations - binaries
libapertium3-3.4-0 (3.4.0~r61013-5) [universe]
Shared library for Apertium
libarb (6.0.6-1) [multiverse]
phylogenetic sequence analysis suite - libraries
libball1.4-data (1.4.3~beta1-3) [universe]
Biochemical Algorithms Library (data files)
libbiojava-java (1:1.7.1-5) [universe]
Java API to biological data and applications (default version)
libbiojava-java-demos (1:1.7.1-5) [universe]
Example programs for BioJava
libbiojava1.7-java (1:1.7.1-5) [universe]
Java API to biological data and applications (version 1.7)
libcamitk4 (4.0.4-2ubuntu2) [universe]
Computer Assisted Medical Intervention Tool Kit - runtime
libcassie1v5 (1.0.5-1) [universe]
library implementating search algorithms
libcg3-0 (0.9.9~r11624-1ubuntu1) [universe]
Runtime for CG-3
libclhep2.1v5 (2.1.4.1+dfsg-1) [universe]
CLHEP: A Class Library for High Energy Physics
libdivsufsort3 (2.0.1-2) [universe]
fast suffix array construction
libdynamicedt3d1.8 (1.8.1+dfsg-1) [universe]
Incrementally updatable Euclidean distance transform library
libeccodes-data (2.0.2-5) [universe]
GRIB and BUFR enecoding/encoding software library - data
libej0 (4.2.1+dfsg-1) [universe]
hardware & software framework for developing science experiments
libgenometools0 (1.5.9+ds-4ubuntu1) [universe]
versatile genome analysis library
libgeotiff-epsg (1.4.2-1) [multiverse]
GeoTIFF library -- EPSG Geodetic Parameter Dataset
libgfsgl0 (20121130+dfsg-2build2) [universe]
graphical viewer for Gerris simulation files. Shared library
libghemical-data (3.0.0-4.1build2) [universe]
Molecular Modelling Library (data files)
libgiac0 (1.2.3.25+dfsg1-2) [universe]
Computer Algebra System C++ library
libgnuradio-fcdproplus3.7.10 (3.7.25.4b6464b-2build2) [universe]
Funcube Dongle Pro Plus controller for GNU Radio (runtime)
libgrits5 (0.8.1-2) [universe]
Grits is a Virtual Globe library
libgtkdatabox-0.9.3-0-glade (1:0.9.3.0+dfsg-3) [universe]
Gtk+ library to display large amounts of numerical data (glade API)
libgtkdatabox-0.9.3-0-libglade (1:0.9.3.0+dfsg-3) [universe]
Gtk+ library to display large amounts of numerical data (glade lib)
libgyoto6 (1.2.0-2ubuntu2) [universe]
Gyoto framework main library an standard plug-in
libhdf5-jni (1.10.0-patch1+docs-3) [universe]
native library used by libhdf5-java
libhfst42 (3.9.0~r4595-3) [universe]
Helsinki Finite-State Transducer Technology Libraries
libhfstospell5 (0.4.0~r4643-4) [universe]
HFST spell checker runtime libraries
libismrmrd1.3 (1.3.3-1build1) [universe]
ISMRM Raw Data format (ISMRMRD)
libjs-mgrs (0.0.3-3) [universe]
Javascript for converting between WGS84 lat/lng and MGRS coordinates
libjs-proj4 (2.3.17+ds-1) [universe]
JavaScript library to transform point coordinates systems
libkst2core2 (2.0.3-5build3) [universe]
kst core library
libkst2math2 (2.0.3-5build3) [universe]
kst math library
libkst2widgets2 (2.0.3-5build3) [universe]
kst widgets library
liblas-bin (1.8.1-3) [universe]
ASPRS LiDAR data translation toolset
liblemon-utils (1.3.1+dfsg-1) [universe]
Library for Efficient Modeling and Optimization in Networks (utilities)
libliggghts3 (3.5.0+repack1-10) [universe]
Open Source DEM Particle Simulation Software. Shared library
liblinear-tools (2.1.0+dfsg-2) [universe]
Standalone applications for LIBLINEAR
liblorene-debian1 (0.0.0~cvs20161116+dfsg-1ubuntu1) [universe]
liblorene shared library
liblorene-export-debian0 (0.0.0~cvs20161116+dfsg-1ubuntu1) [universe]
liblorene_export shared library
liblorenef77-debian1 (0.0.0~cvs20161116+dfsg-1ubuntu1) [universe]
liblorenef77 shared library
liblttoolbox3-3.3-0v5 (3.3.3~r68466-2) [universe]
Shared library for lttoolbox
libncarg-bin (6.3.0-13) [universe]
NCAR command-language library - development tools
libncarg-data (6.3.0-13) [universe]
NCAR command-language library - Data
libngram-tools (1.3.0-1) [universe]
OpenGRM n-gram Language Modeling toolkit
libocas-tools (0.97+dfsg-3) [universe]
Standalone applications implementing the OCAS solver
liboctomap1.8 (1.8.1+dfsg-1) [universe]
3D occupancy grid mapping approach library for mapping
liboctovis1.8 (1.8.1+dfsg-1) [universe]
Visualization library for OctoMap
libopenfoam (4.1+dfsg1-1) [universe]
Set of programs for Computational Fluid Dynamics (CFD). Libraries
libopengm-bin (2.3.6+20160905-1build2) [universe]
command line tools for OpenGM
libotb (5.8.0+dfsg-3) [universe]
ORFEO Toolbox library metapackage
libotb-apps (5.8.0+dfsg-3) [universe]
Plugins for ORFEO Toolbox applications
libpwiz-tools (3.0.9393-1build3) [universe]
ProteoWizard command line tools
libqgis-customwidgets (2.14.11+dfsg-2) [universe]
QGIS custom widgets for Qt Designer
libqgis-server2.14.11 (2.14.11+dfsg-2) [universe]
QGIS - shared server library
libqtpropertybrowser4 (4.0.4-2ubuntu2) [universe]
Qt Property Browser Library - runtime
librasterlite2-1 (1.0.0~rc0+devel1-4) [universe]
library for huge raster coverages using a SpatiaLite DBMS
librsl1 (1.43-1.1) [universe]
TRMM Radar Software Library
libsilo-bin (4.10.2-6build3) [universe]
Utilities to manipulate libsilo files
libsimgrid3.13 (3.13-1) [universe]
Toolkit for scalable simulation of distributed applications
libsquizz (0.99c+dfsg-1) [universe]
Conversion libs used by squizz genetic sequence converter
libstxxl1v5 (1.4.1-2) [universe]
C++ Standard Template Library for extra large datasets
libvcflib-tools (1.0.0~rc1+dfsg1-3ubuntu1) [universe]
C++ library for parsing and manipulating VCF files (tools)
libxy-bin (1.3-1.1) [universe]
xylib - utilities
libyade (2017.01a-7) [universe]
Platform for discrete element modeling. Libraries
liggghts (3.5.0+repack1-10) [universe]
Open Source DEM Particle Simulation Software.
limereg (1.4.0-2build4) [universe]
Lightweight Image Registration
linguider (4.1.1-1) [universe]
Astronomical autoguiding program for Linux
litl-tools (0.1.8-2) [universe]
Lightweight Trace Library - tools
logcentral (2.7-1.1) [universe]
Logging service for distributed applications
logcentral-tools (2.7-1.1) [universe]
Logging service for distributed applications
logol (1.7.5-1) [universe]
Pattern matching tool using Logol language
logol-bin (1.7.5-1) [universe]
Pattern matching tool using Logol language
loki (2.4.7.4-6) [universe]
MCMC linkage analysis on general pedigrees
loki-doc (2.4.7.4-6) [universe]
MCMC linkage analysis on general pedigrees (PS manual)
looptools (2.8-1) [universe]
Integral Evaluator of One-loop Feynman Diagram
lorene (0.0.0~cvs20161116+dfsg-1ubuntu1) [universe]
framework for numerical relativity
lorene-codes-src (0.0.0~cvs20161116+dfsg-1ubuntu1) [universe]
source files of LORENE-based codes
ltrsift (1.0.2-7) [universe]
postprocessing and classification of LTR retrotransposons
ltrsift-examples (1.0.2-7) [universe]
example data for LTRsift
lttoolbox-dev (3.3.3~r68466-2) [universe]
Development tools and library for lttoolbox
lutefisk (1.0.7+dfsg-4) [universe]
de novo interpretation of peptide CID spectra
macs (2.1.1.20160309-1) [universe]
Model-based Analysis of ChIP-Seq on short reads sequencers
macsyfinder (1.0.2-3) [universe]
detection of macromolecular systems in protein datasets
maffilter (1.1.0-1+dfsg-2build2) [universe]
process genome alignment in the Multiple Alignment Format
maffilter-examples (1.1.0-1+dfsg-2build2) [universe]
process genome alignment in the Multiple Alignment Format (example data)
mafft (7.307-1) [universe]
Multiple alignment program for amino acid or nucleotide sequences
mapdamage (2.0.6+dfsg-1) [universe]
tracking and quantifying damage patterns in ancient DNA sequences
mapsembler2 (2.2.3+dfsg-3) [universe]
bioinformatics targeted assembly software
maq (0.7.1-7) [universe]
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-7) [universe]
graphical read alignment viewer for short gene sequences
mash (1.1.1-1) [universe]
fast genome and metagenome distance estimation using MinHash
massxpert (3.6.1-1) [universe]
linear polymer mass spectrometry software
massxpert-data (3.6.1-1) [universe]
linear polymer mass spectrometry software - arch-indep data
matlab-gdf (0.1.2-2.0build6) [multiverse]
IO library for the GDF -- Matlab interface
maude (2.7-2) [universe]
high-performance logical framework
mauve-aligner (2.4.0+4734-3) [universe]
multiple genome alignment
mayavi2 (4.5.0-1) [universe]
scientific visualization package for 2-D and 3-D data
mbt (3.2.16-1) [universe]
memory-based tagger-generator and tagger
mbtserver (0.11-1) [universe]
Server extensions for the MBT tagger
meep (1.3-4build1) [universe]
software package for FDTD simulation
meep-lam4 (1.3-2build1) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpi-default (1.3-3build4) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpich2 (1.3-4build2) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.3-3build3) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
melting (4.3.1+dfsg-2) [universe]
compute the melting temperature of nucleic acid duplex
melting-gui (4.3.1+dfsg-2) [universe]
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.18.3+ds-1build2) [universe]
map editor for OpenStreetMap.org
meryl (0~20150903+r2013-3) [universe]
in- and out-of-core kmer counting and utilities
metaphlan2 (2.6.0+ds-2) [universe]
Metagenomic Phylogenetic Analysis
metaphlan2-data (2.6.0+ds-2) [universe]
data package for Metagenomic Phylogenetic Analysis
metastudent (2.0.1-4) [universe]
predictor of Gene Ontology terms from protein sequence
metastudent-data (2.0.1-2) [universe]
predictor of Gene Ontology terms from protein sequence - data files
metastudent-data-2 (1.0.0-2) [universe]
predictor of Gene Ontology terms from protein sequence - data #2
metview (4.8.0-4) [universe]
Interactive data visualization and analysis environment,
metview-data (4.8.0-4) [universe]
Data needed for the Metview data analysis environment
mgltools-bhtree (1.5.7-1) [multiverse]
Bhtree library extension module
mgltools-cadd (1.5.7-1) [multiverse]
Computer Aided Drug Discovery (CADD) Pipeline
mgltools-cmolkit (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python classes to interpret trajectories of Gromacs
mgltools-dejavu (1.5.7-1) [multiverse]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.7-1) [multiverse]
Python library for geometric analyses
mgltools-mglutil (1.5.7-2) [multiverse]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.7~rc1+cvs.20140424-1) [multiverse]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.7-1) [multiverse]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.7-1) [multiverse]
Opengltk Python extension
mgltools-pmv (1.5.7-1) [multiverse]
Python-based Molecular Viewer
mgltools-pmv-test (1.5.7-1) [multiverse]
Python-based Molecular Viewer (functionality tests)
mgltools-pyautodock (1.5.7-1) [multiverse]
Python implementation of autodock
mgltools-pybabel (1.5.7-1) [multiverse]
molecular structure file access and interpretation
mgltools-pyglf (1.5.7-1) [multiverse]
GLF library Python extension to write text in OpenGL
mgltools-scenario2 (1.5.7-1) [multiverse]
Python-based viewer of molecular structures
mgltools-sff (1.5.7-1) [multiverse]
Simple Force Field for Python
mgltools-support (1.5.7-1) [multiverse]
Update mechanism of MGLTools
mgltools-symserv (1.5.7-1) [multiverse]
Symetry server
mgltools-utpackages (1.5.7-1) [multiverse]
UT Austin software Python extensions
mgltools-viewerframework (1.5.7-1) [multiverse]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.7-1) [multiverse]
Python-based Visual Programming Environment
mgltools-visionlibraries (1.5.7-1) [multiverse]
Extensions for Python-based Visual Programming Environment
mgltools-volume (1.5.7-1) [multiverse]
Volume rendering Python package
mgltools-webservices (1.5.7-1) [multiverse]
webservices for components of autodocktools
mhap (2.1.1+dfsg-1) [universe]
locality-sensitive hashing to detect long-read overlaps
mia-doctools (2.4.3-2ubuntu4) [universe]
Helper scripts for run-time document creation
mia-tools (2.4.3-2ubuntu4) [universe]
Command line tools for gray scale image processing
mia-viewit (1.0.4-1) [universe]
Viewer program for 3D data sets created by using MIA
mialmpick (0.2.13-1) [universe]
Tools for landmark picking in 3D volume data sets
microbegps (1.0.0-2) [universe]
explorative taxonomic profiling tool for metagenomic data
microbiomeutil (20101212+dfsg1-1) [universe]
Microbiome Analysis Utilities
microbiomeutil-data (20101212+dfsg1-1) [universe]
Reference 16S sequences and NAST-alignments used by microbiomeutil tools
microhope (4.2.1+dfsg-1) [universe]
hardware & software framework to learn microcontrollers
minc-tools (2.3.00+dfsg-1.1build1) [universe]
MNI medical image format tools
minia (1.6906-1) [universe]
short-read biological sequence assembler
miniasm (0.2+dfsg-2) [universe]
ultrafast de novo assembler for long noisy DNA sequencing reads
minimap (0.2-3) [universe]
tool for approximate mapping of long biosequences such as DNA reads
minisat (1:2.2.1-5) [universe]
Fast and lightweight SAT solver
minisat+ (1.0-3) [universe]
solver for pseudo-Boolean constraints
minisat2 (1:2.2.1-5) [universe]
Transitional package for minisat
minisat2
virtual package provided by minisat
mipe (1.1-5) [universe]
Tools to store PCR-derived data
mira-assembler (4.9.6-2) [universe]
Whole Genome Shotgun and EST Sequence Assembler
mira-rfam-12s-rrna (4.9.6-2) [universe]
extract of RFAM 12 rRNA database
missfits (2.8.0-1) [universe]
Basic maintenance and packaging tasks on FITS files
mitools (2.0.3-0.1 [amd64, arm64, armhf, i386, ppc64el, s390x], 2.0.2-0.3 [powerpc]) [universe]
view, convert and perform basic maths with medical image datasets
mldemos (0.5.1-3build2) [universe]
Machine Learning Demos (MLDemos) with Visualization
mlpack-bin (2.1.1-1) [universe]
intuitive, fast, scalable C++ machine learning library (binaries)
mlv-smile (1.47-4) [universe]
Find statistically significant patterns in sequences
mmass (5.5.0-5) [universe]
Mass spectrometry tool for proteomics
mmass-modules (5.5.0-5) [universe]
Mass spectrometry tool for proteomics - extension modules
mobyle (1.5.5+dfsg-1) [universe]
Web portal that provides web forms for command-line software
mobyle-programs (5.1.2-1) [universe]
Program descriptions for the mobyle portal
mobyle-tutorials (1.5.0-2) [universe]
program tutorials for the mobyle portal
mobyle-utils (1.5.5+dfsg-1) [universe]
binary tools used by Mobyle
mocassin (2.02.72-2) [universe]
MOnte CArlo SimulationS of Ionised Nebulae
mocassin-benchmarks (2.02.72-2) [universe]
benchmarks for the photoionisation code MOCASSIN
mocassin-data (2.02.72-2) [universe]
atomic and optical data for the photoionisation code MOCASSIN
mocassin-examples (2.02.72-2) [universe]
Examples for the photoionisation code MOCASSIN
molds (0.3.1-1build7) [universe]
Semi-empirical electronic structure and molecular dynamics
montage (4.0+dfsg-3build3) [universe]
Toolkit for assembling FITS images into mosaics
montage-gridtools (4.0+dfsg-3build3) [universe]
Create files to run montage on the grid
montecarlo-base (20061220+dfsg3-3) [universe]
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-3) [universe]
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-6ubuntu1) [universe]
Semi-empirical Quantum Chemistry Library (binaries)
morse-simulator (1.4-2) [universe]
Multi-OpenRobot Simulation Engine
morse-simulator-data (1.4-2) [universe]
Multi-OpenRobot Simulation Engine
mothur (1.38.1.1-1) [universe]
sequence analysis suite for research on microbiota
mothur-mpi (1.38.1.1-1) [universe]
mpi-enabled binary for mothur
mpb (1.5-2build6) [universe]
MIT Photonic-Bands
mpb-mpi (1.5-2build6) [universe]
MIT Photonic-Bands, parallel (mpich) version
mpb-scm (1.5-2build6) [universe]
MIT Photonic-Bands initialisation files
mpgrafic (0.3.10-1) [universe]
MPI version of N-body initial conditions grafic package
mpi-testsuite (3.2+dfsg-1build1) [universe]
MPI testsuite results
mpqc (2.3.1-18) [universe]
Massively Parallel Quantum Chemistry Program
mpqc-openmpi (2.3.1-18) [universe]
Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)
mpqc-support (2.3.1-18) [universe]
Massively Parallel Quantum Chemistry Program (support tools)
mpqc3 (0.0~git20170114-4 [amd64, arm64, armhf, i386, ppc64el], 0.0~git20160216-7 [powerpc]) [universe]
Massively Parallel Quantum Chemistry Program
mpqc3-data (0.0~git20170114-4) [universe]
Massively Parallel Quantum Chemistry Program (data files)
mrbayes-mpi (3.2.6+dfsg-1build4) [universe]
Bayesian Inference of Phylogeny - mpi version
mriconvert (1:2.1.0-1) [universe]
medical image file conversion utility
mricron (0.20140804.1~dfsg.1-2) [universe]
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20140804.1~dfsg.1-2) [universe]
data files for MRIcron
mrpt-apps (1:1.4.0-7) [universe]
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-common (1:1.4.0-7) [universe]
Mobile Robot Programming Toolkit - Example datasets and files
mrs (6.0.5+dfsg-2build2) [universe]
Information Retrieval System for Biomedical databanks
mrtrix (0.2.12-2build1) [universe]
diffusion-weighted MRI white matter tractography
mssstest (3.0-5) [multiverse]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.23+dfsg-2) [universe]
Efficient sequence alignment of full genomes
munipack (0.5.7-2) [universe]
Astronomical photometry software package
munipack-cli (0.5.7-2) [universe]
Command line interface of Munipack
munipack-core (0.5.7-2) [universe]
Core routines of Munipack
munipack-gui (0.5.7-2) [universe]
Graphical user interface of Munipack
murasaki (1.68.6-6build4) [universe]
homology detection tool across multiple large genomes
murasaki-common (1.68.6-6build4) [universe]
homology detection tool across multiple large genomes (common files)
murasaki-mpi (1.68.6-6build4) [universe]
homology detection tool across multiple large genomes (MPI-version)
muscle (1:3.8.31+dfsg-2) [universe]
Multiple alignment program of protein sequences
music-bin (1.0.7-1.3) [universe]
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.3-1ubuntu1 [amd64, arm64, armhf, i386, ppc64el, s390x], 3.2.2-1 [powerpc]) [universe]
multiple structural alignment of proteins
mustang-testdata (3.2.3-1ubuntu1) [universe]
multiple structural alignment of proteins, test data
nanopolish (0.5.0-1build1) [universe]
consensus caller for nanopore sequencing data
nast-ier (20101212+dfsg1-1) [universe]
NAST-based DNA alignment tool
nastran (0.1.95-1) [multiverse]
NASA Structural Analysis System
nautic (1.5-3) [universe]
computation of observer position in astro-navigation
ncbi-blast+ (2.6.0-1) [universe]
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.6.0-1) [universe]
NCBI Blast legacy call script
ncbi-entrez-direct (6.10.20170123+ds-1) [universe]
NCBI Entrez utilities on the command line
ncbi-epcr (2.3.12-1-4) [universe]
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20170106-2) [universe]
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-seg (0.0.20000620-3) [universe]
tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin (6.1.20170106-2) [universe]
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20170106-2) [universe]
NCBI libraries for biology applications (X-based utilities)
ncl-ncarg (6.3.0-13) [universe]
NCAR Command Language and NCAR graphics
ncl-tools (2.1.18+dfsg-2) [universe]
tools to deal with NEXUS files
ncoils (2002-4) [universe]
coiled coil secondary structure prediction
ncview (2.1.7+ds-1) [universe]
X11 visual browser for NetCDF format files
neat (2.0-2) [universe]
Nebular Empirical Analysis Tool
neobio (0.0.20030929-2) [universe]
computes alignments of amino acid and nucleotide sequences
netcdf-bin (1:4.4.1.1-1build1) [universe]
Programs for reading and writing NetCDF files
neurodebian (0.37.5) [universe]
neuroscience-oriented distribution - repository configuration
neurodebian-archive-keyring (0.37.5) [universe]
neuroscience-oriented distribution - GnuPG archive keys
neurodebian-desktop (0.37.5) [universe]
neuroscience-oriented distribution - desktop integration
neurodebian-dev (0.37.5) [universe]
neuroscience-oriented distribution - development tools
neurodebian-popularity-contest (0.37.5) [universe]
neuroscience-oriented distribution - popcon integration
nexus-tools (4.3.2-svn1921-4build1) [universe]
NeXus scientific data file format - applications
nifti2dicom (0.4.11-1ubuntu7) [universe]
convert 3D medical images to DICOM 2D series
nifti2dicom-data (0.4.11-1ubuntu7) [universe]
data files for nifti2dicom
njplot (2.4-7) [universe]
phylogenetic tree drawing program
node-mgrs (0.0.3-3) [universe]
Utility for converting between WGS84 lat/lng and MGRS coordinates
node-proj4 (2.3.17+ds-1) [universe]
Node.js module to transform point coordinates systems
node-sphericalmercator (1.0.1-2) [universe]
Spherical Mercator projection support for NodeJS
node-srs (0.4.8+dfsg-3) [universe]
spatial reference library for Node.js
norsnet (1.0.17-2) [universe]
tool to identify unstructured loops in proteins
norsp (1.0.6-2) [universe]
predictor of non-regular secondary structure
numdiff (5.8.1-2) [universe]
Compare similar files with numeric fields
nutsqlite (1.9.9.3-2) [universe]
Dietary nutrition analysis software
nwchem (6.6+r27746-4) [universe]
High-performance computational chemistry software
nwchem-data (6.6+r27746-4) [universe]
High-performance computational chemistry software (data files)
oar-common (2.5.7-3) [universe]
OAR batch scheduler common package
oar-node (2.5.7-3) [universe]
OAR batch scheduler node package
oar-restful-api (2.5.7-3) [universe]
OAR web services
oar-server (2.5.7-3) [universe]
OAR batch scheduler server package
oar-server-mysql (2.5.7-3) [universe]
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.7-3) [universe]
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.7-3) [universe]
OAR batch scheduler user package
oar-user-mysql (2.5.7-3) [universe]
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.7-3) [universe]
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.7-3) [universe]
OAR batch scheduler visualization tool package
obdgpslogger (0.16-1.3) [universe]
suite of tools to log OBDII and GPS data
objcryst-fox (1.9.6.0-2.1build1) [universe]
Free Objects for Xtallography
oce-draw (0.17.2-1) [universe]
OpenCASCADE Community Edition CAE platform shared library
octave-bart (0.4.00-1) [universe]
Octave bindings for BART
octave-biosig (1.3.0-2.2 [amd64, arm64, armhf, i386, ppc64el, s390x], 1.3.0-2.1build2 [powerpc]) [universe]
Octave bindings for BioSig library
octave-gdf (0.1.2-2.0build6) [universe]
IO library for the GDF -- Octave interface
octave-lhapdf (5.9.1-4build1) [universe]
Octave Bindings for LHAPDF
octave-psychtoolbox-3 (3.0.14.20170103+git6-g605ff5c.dfsg1-1) [universe]
toolbox for vision research -- Octave bindings
octomap-tools (1.8.1+dfsg-1) [universe]
Tools for 3D occupancy grid mapping
octovis (1.8.1+dfsg-1) [universe]
Visualization tool for OctoMap
odil (0.7.3-1) [universe]
C++11 library for the DICOM standard (application)
odin (2.0.3-0.1 [amd64, arm64, armhf, i386, ppc64el, s390x], 2.0.2-0.3 [powerpc]) [universe]
develop, simulate and run magnetic resonance sequences
ogdi-bin (3.2.0+ds-1build1) [universe]
Open Geographic Datastore Interface Library -- utilities
ompl-demos (1.1.0+ds1-2build1) [universe]
Open Motion Planning Library (OMPL) demos
openbabel (2.3.2+dfsg-2.4build1) [universe]
Chemical toolbox utilities (cli)
openbabel-gui (2.3.2+dfsg-2.4build1) [universe]
Chemical toolbox utilities (graphical user interface)
opencaster (3.2.2+dfsg-1.1) [universe]
MPEG2 transport stream data generator and packet manipulator
openfoam (4.1+dfsg1-1) [universe]
Set of programs for Computational Fluid Dynamics (CFD). Binaries
openfoam-examples (4.1+dfsg1-1) [universe]
Set of programs for Computational Fluid Dynamics (CFD). Examples
openmolar (1.0.15-gd81f9e5-1) [universe]
dental practice management software
openms (2.0.0-4build3) [universe]
package for LC/MS data management and analysis
openms-common (2.0.0-4build3) [universe]
package for LC/MS data management and analysis - shared data
openmx (3.7.6-1build4) [universe]
package for nano-scale material simulations
openmx-data (3.7.6-1build4) [universe]
package for nano-scale material simulations (data)
openrocket (15.03) [universe]
Model Rocket Simulator
opensesame (0.27.4-2.1) [universe]
graphical experiment builder for the social sciences
openturns-examples (1.7-3) [universe]
examples of OpenTURNS functionalities
openturns-validation (1.7-3) [universe]
validation files for OpenTURNS
openuniverse (1.0beta3.1+dfsg-6) [universe]
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-6) [universe]
3D Universe Simulator data files
optgeo (2.23-1) [universe]
simulator for geometrical optics
opticalraytracer (3.2-1.1ubuntu1) [universe]
Virtual lens design workshop
origami (1.2.7+really0.7.4-1.1) [universe]
command-line management tool for Folding @ Home clients
orthanc (1.2.0+dfsg-1) [universe]
Lightweight, RESTful DICOM server for medical imaging
orthanc-dicomweb (0.3+dfsg-2 [amd64, arm64, armhf, i386, ppc64el, s390x], 0.3+dfsg-1ubuntu1 [powerpc]) [universe]
Plugin to extend Orthanc with support of WADO and DICOMweb
orthanc-imagej (1.1+dfsg-1) [universe]
ImageJ plugin to import images from Orthanc
orthanc-postgresql (2.0-3) [universe]
Plugins to use PostgreSQL as a database back-end to Orthanc
orthanc-webviewer (2.2-2 [amd64, arm64, armhf, i386, ppc64el, s390x], 2.2-1ubuntu1 [powerpc]) [universe]
Web viewer of medical images for Orthanc
ossim-core (1.8.20.3+ds-5build1) [universe]
OSSIM core utilities
otb-bin (5.8.0+dfsg-3) [universe]
ORFEO Toolbox command line applications
otb-bin-qt (5.8.0+dfsg-3) [universe]
ORFEO Toolbox graphical user interface applications
otb-testdriver (5.8.0+dfsg-3) [universe]
ORFEO Toolbox library - OTBTestDriver
otf-trace (1.12.5+dfsg-2build1) [universe]
Open Trace Format support library - development files
ovito (2.3.3+dfsg1-2build2) [universe]
visualization and analysis tool for atomistic simulation data
p4vasp (0.3.29+dfsg-3) [universe]
visualization suite for the Vienna Ab-initio Simulation Package (VASP)
paje.app (1.98-1build3) [universe]
generic visualization tool (Gantt chart and more)
paml (4.8+dfsg-1) [multiverse]
Phylogenetic Analysis by Maximum Likelihood (PAML)
paraclu (9-1) [universe]
Parametric clustering of genomic and transcriptomic features
parafly (0.0.2013.01.21-3) [universe]
parallel command processing using OpenMP
paraview (5.1.2+dfsg1-2) [universe]
Parallel Visualization Application
parsinsert (1.04-2) [universe]
Parsimonious Insertion of unclassified sequences into phylogenetic trees
parsnp (1.2+dfsg-3) [universe]
rapid core genome multi-alignment
paw (1:2.14.04.dfsg.2-9) [universe]
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-9) [universe]
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-9) [universe]
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-9) [universe]
Physics Analysis Workstation examples and tests
pbbamtools (0.7.4+ds-1) [universe]
processing Pacific Biosciences binary alignment/map files
pbbarcode (0.8.0-2) [universe]
annotate PacBio sequencing reads with barcode information
pbdagcon (0.3+20161121+ds-1) [universe]
sequence consensus using directed acyclic graphs
pbgenomicconsensus (2.0.0+20160420-2) [universe]
Pacific Biosciences variant and consensus caller
pbh5tools (0.8.0+dfsg-5) [universe]
tools for manipulating Pacific Biosciences HDF5 files
pbhoney (15.8.24+dfsg-2) [universe]
genomic structural variation discovery
pbjelly (15.8.24+dfsg-2) [universe]
genome assembly upgrading tool
pbsim (1.0.3-3) [universe]
simulator for PacBio sequencing reads
pdb2pqr (2.1.1+dfsg-2) [universe]
Preparation of protein structures for electrostatics calculations
pegasus-wms (4.4.0+dfsg-6) [universe]
Scientific workflow management system for HTCondor
perlprimer (1.2.3-1) [universe]
Graphical design of primers for PCR
perlprimer-doc (1.2.3-1) [universe]
Tutorial to perlprimer
perm (0.4.0-2) [universe]
efficient mapping of short reads with periodic spaced seeds
phipack (0.0.20160614-2) [universe]
PHI test and other tests of recombination
phybin (0.3-1) [universe]
binning/clustering newick trees by topology
phylip (1:3.696+dfsg-5) [universe]
package of programs for inferring phylogenies
phylip-doc (1:3.696+dfsg-5) [universe]
package of programs for inferring phylogenies (documentation)
phyml (3:3.2.0+dfsg-3) [universe]
Phylogenetic estimation using Maximum Likelihood
physamp (0.2.0-1) [universe]
sample sequence alignment according to its corresponding phylogenetic tree
phyutility (2.7.3-1) [universe]
simple analyses or modifications on both phylogenetic trees and data matrices
picard-tools (2.1.1+dfsg-1) [universe]
Command line tools to manipulate SAM and BAM files
picosat (960-1) [universe]
SAT solver with proof and core support
piler (0~20140707-1) [universe]
genomic repeat analysis
pirs (2.0.2+dfsg-5.1) [universe]
Profile based Illumina pair-end Reads Simulator
pirs-examples (2.0.2+dfsg-5.1) [universe]
profile basd Illumina pair-end Reads Simulator (example data)
pirs-profiles (2.0.2+dfsg-5.1) [universe]
profile basd Illumina pair-end Reads Simulator (profile data)
pktools (2.6.7-3) [universe]
GDAL add-on tools to perform useful raster processing
placnet (1.03-2) [universe]
Plasmid Constellation Network project
planets (0.1.13-16) [universe]
Gravitation simulation of planetary bodies
plast (2.3.1+dfsg-4) [universe]
Parallel Local Sequence Alignment Search Tool
plast-example (2.3.1+dfsg-4) [universe]
Parallel Local Sequence Alignment Search Tool (example data)
plastimatch (1.6.5+dfsg.1-1) [universe]
medical image reconstruction and registration
plink (1.07-7) [universe]
whole-genome association analysis toolset
plink1.9 (1.90~b3.45-170113-1) [universe]
whole-genome association analysis toolset
pnetcdf-bin (1.7.0-1build1) [universe]
Programs for reading and writing parallel NetCDF files
poa (2.0+20060928-4) [universe]
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106-2.1) [universe]
population genetic software
poretools (0.6.0+dfsg-2) [universe]
toolkit for nanopore nucleotide sequencing data
poretools-data (0.6.0+dfsg-2) [universe]
toolkit for nanopore nucleotide sequencing data -- sample datasets
pp-popularity-contest (1.0.6-2build4) [universe]
PredictProtein popularity contest
pprepair (0.0~20160321-87ffae5-1build4) [universe]
planar partition repair tool
praat (6.0.23-1) [universe]
program for speech analysis and synthesis
prank (0.0.150803-2) [universe]
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
predictnls (1.0.20-3) [universe]
prediction and analysis of protein nuclear localization signals
predictprotein (1.1.07-2) [universe]
suite of protein sequence analysis tools
prepair (0.7-6build3) [universe]
polygon repair tool
prepair-data (0.7-6build3) [universe]
polygon repair tool -- example data
prime-phylo (1.0.11-4build2) [universe]
bayesian estimation of gene trees taking the species tree into account
primer3 (2.3.7-3) [universe]
tool to design flanking oligo nucleotides for DNA amplification
primer3-examples (2.3.7-3) [universe]
tool to design flanking oligo nucleotides for DNA amplification (examples)
proalign (0.603-2) [universe]
Probabilistic multiple alignment program
probabel (0.4.5-3) [universe]
Toolset for Genome-Wide Association Analysis
probabel-examples (0.4.5-3) [universe]
Example files for ProbABEL
probalign (1.4-5) [universe]
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-11) [universe]
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-11) [universe]
Extra programs from the probcons package
proda (1.0-10) [universe]
multiple alignment of protein sequences
prodigal (1:2.6.3-1) [universe]
Microbial (bacterial and archaeal) gene finding program
profbval (1.0.22-4) [universe]
predictor of flexible/rigid protein residues from sequence
profisis (1.0.11-3) [universe]
prediction of protein-protein interaction sites from sequence
profnet-bval (1.0.22-4) [universe]
neural network architecture for profbval
profnet-chop (1.0.22-4) [universe]
neural network architecture for profchop
profnet-con (1.0.22-4) [universe]
neural network architecture for profcon
profnet-isis (1.0.22-4) [universe]
neural network architecture for profisis
profnet-md (1.0.22-4) [universe]
neural network architecture for metadisorder
profnet-norsnet (1.0.22-4) [universe]
neural network architecture for norsnet
profnet-prof (1.0.22-4) [universe]
neural network architecture for profacc
profnet-snapfun (1.0.22-4) [universe]
neural network architecture for snapfun
profphd (1.0.42-1) [universe]
secondary structure and solvent accessibility predictor
profphd-net (1.0.22-4) [universe]
neural network architecture for profphd
profphd-utils (1.0.10-3) [universe]
profphd helper utilities convert_seq and filter_hssp
proftmb (1.1.12-6) [universe]
per-residue prediction of bacterial transmembrane beta barrels
progressivemauve (1.2.0+4713-2build3) [universe]
multiple genome alignment algorithms
proj-bin (4.9.3-1) [universe]
Cartographic projection library (tools)
proj-rdnap (2008-6) [multiverse]
RDNAP grid correction files for PROJ.4
prooftree (0.13-1) [universe]
proof-tree visualization for Proof General
proteinortho (5.15+dfsg-1) [universe]
Detection of (Co-)orthologs in large-scale protein analysis
prottest (3.4.2+dfsg-2) [universe]
selection of best-fit models of protein evolution
psfex (3.17.1+dfsg-3) [universe]
Point Spread Function model extractor
psi3 (3.4.0-6build1) [universe]
Quantum Chemical Program Suite
psi4 (1:1.0-1) [universe]
Quantum Chemical Program Suite
psi4-data (1:1.0-1) [universe]
Quantum Chemical Program Suite (data files)
psychopy (1.83.04.dfsg-2) [universe]
environment for creating psychology stimuli in Python
psychtoolbox-3-common (3.0.14.20170103+git6-g605ff5c.dfsg1-1) [universe]
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (3.0.14.20170103+git6-g605ff5c.dfsg1-1) [universe]
toolbox for vision research -- arch-specific parts
purify (2.0.0-1) [universe]
Collection of routines for radio interferometric imaging
pyfai (0.13.0+dfsg-1) [universe]
Fast Azimuthal Integration scripts
pyformex (0.8.6-4ubuntu5) [universe]
program to create 3D geometry from Python scripts.
pyformex-lib (0.8.6-4ubuntu5) [universe]
program to create 3D geometry from Python scripts.
pyfr (1.5.0-1) [universe]
flux reconstruction in Python
pylang (0.0.4-0ubuntu3) [universe]
complete right sentence with random words generated.
pymca (5.1.3+dfsg-1) [universe]
Applications and toolkit for X-ray fluorescence analysis -- scripts
pymca-data (5.1.3+dfsg-1) [universe]
Architecture independent data files for PyMca
pymoctool (0.4.1-1) [universe]
Python Multi-Order Coverage maps tool for Virtual Observatory
pymol (1.8.4.0+dfsg-1build1) [universe]
Molecular Graphics System
pymol-data (1.8.4.0+dfsg-1build1) [universe]
data files for PyMOL
pythia8-data (8.1.86-1.2) [universe]
PYTHIA8 data files
python-drizzle-testdata (1.5-2) [universe]
Dithered image combination for Python (Test data)
python-escript (5.0-2) [universe]
Escript/Finley finite elements Python2 system (with OpenMP)
python-escript-doc (5.0-2) [universe]
Documentation for Escript/Finley
python-escript-mpi (5.0-2) [universe]
Escript/Finley finite elements Python2 system (OpenMP + MPI)
python-expyriment (0.7.0+git34-g55a4e7e-3.2) [universe]
Python library for cognitive and neuroscientific experiments
python-ifeffit (2:1.2.11d-10.1) [multiverse]
Python GUI interface and extensions for IFEFFIT
python-nifti (0.20100607.1-4.1) [universe]
Python interface to the NIfTI I/O libraries
python-pybigwig (0.3.2-1ubuntu1) [universe]
Python 2 module for quick access to bigBed and bigWig files
python-pyepl (1.1.0+git12-g365f8e3-2ubuntu1) [universe]
module for coding psychology experiments in Python
python-pyepl-common (1.1.0+git12-g365f8e3-2ubuntu1) [universe]
module for coding psychology experiments in Python
python-pynlpl (1.1.2-1) [universe]
PyNLPl is a library for Natural Language Processing (Python 2 version)
python-pyode (1.2.0-4+cvs20090320.2) [universe]
Python bindings for The Open Dynamics Engine
python-saga (2.3.1+dfsg-3build1) [universe]
SAGA GIS Python bindings
python3-escript (5.0-2) [universe]
Escript/Finley finite elements Python3 system (with OpenMP)
python3-escript-mpi (5.0-2) [universe]
Escript/Finley finite elements Python3 system (OpenMP + MPI)
python3-morse-simulator (1.4-2) [universe]
Multi-OpenRobot Simulation Engine
python3-pybigwig (0.3.2-1ubuntu1) [universe]
Python 3 module for quick access to bigBed and bigWig files
python3-pynlpl (1.1.2-1) [universe]
PyNLPl is a library for Natural Language Processing (Python 3 version)
pyzo (4.3.1-1) [universe]
interactive editor for scientific Python
qfits-tools (6.2.0-8ubuntu1) [universe]
FITS manipulation tools
qfitsview (3.3+p1+dfsg-1build1) [universe]
FITS file viewer based on DPUSER
qgis (2.14.11+dfsg-2) [universe]
Geographic Information System (GIS)
qgis-api-doc (2.14.11+dfsg-2) [universe]
QGIS API documentation
qgis-common (2.14.11+dfsg-2) [universe]
QGIS - architecture-independent data
qgis-plugin-grass (2.14.11+dfsg-2) [universe]
GRASS plugin for QGIS
qgis-plugin-grass-common (2.14.11+dfsg-2) [universe]
GRASS plugin for QGIS - architecture-independent data
qgis-provider-grass (2.14.11+dfsg-2) [universe]
GRASS provider for QGIS
qgis-providers (2.14.11+dfsg-2) [universe]
collection of data providers to QGIS
qgis-providers-common (2.14.11+dfsg-2) [universe]
collection of data providers to QGIS - architecture-independent files
qgis-server (2.14.11+dfsg-2) [universe]
QGIS server providing various OGC services
qiime (1.8.0+dfsg-4ubuntu1) [universe]
Quantitative Insights Into Microbial Ecology
qiime-data (1.8.0+dfsg-4ubuntu1) [universe]
Quantitative Insights Into Microbial Ecology (supporting data)
qmapshack (1.7.2-1) [universe]
GPS mapping (GeoTiff and vector) and GPSr management
qmc (0.94-3.1) [universe]
Quine McClusky Simplification Tool
qnifti2dicom (0.4.11-1ubuntu7) [universe]
convert 3D medical images to DICOM 2D series (gui)
qrisk2 (0.1.20150729-2) [universe]
cardiovascular disease risk calculator
qthid-fcd-controller (4.1-3) [universe]
Funcube Dongle controller
qtltools (1.1+dfsg-1) [universe]
Tool set for molecular QTL discovery and analysis
quantum-espresso (6.0-3) [universe]
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
quantum-espresso-data (6.0-3) [universe]
Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
qutemol (0.4.1~cvs20081111-6build1) [universe]
interactive visualization of macromolecules
r-cran-colorspace (1.3-2-1) [universe]
GNU R Color Space Manipulation
r-cran-epibasix (1.3-2) [universe]
GNU R Elementary Epidemiological Functions
r-cran-genetics (1.3.8.1-1) [universe]
GNU R package for population genetics
r-cran-haplo.stats (1.7.7-1) [universe]
GNU R package for haplotype analysis
r-cran-maptools (1:0.8-41+dfsg-1) [multiverse]
GNU R Tools for reading and handling spatial objects
r-cran-msm (1.6.4-1) [universe]
GNU R Multi-state Markov and hidden Markov models in continuous time
r-cran-randomforest (4.6-12-1) [universe]
GNU R package implementing the random forest classificator
r-cran-sp (1:1.2-3-1) [universe]
GNU R classes and methods for spatial data
r-cran-spc (1:0.5.3-1) [universe]
GNU R Statistical Process Control
r-cran-surveillance (1.13.0-1) [multiverse]
GNU R package for the Modeling and Monitoring of Epidemic Phenomena
r-cran-vcd (1:1.4-3-1) [universe]
GNU R Visualizing Categorical Data
r-cran-xtable (1:1.8-2-1) [universe]
GNU R coerce data to LaTeX and HTML tables
raccoon (1.0b-2) [multiverse]
preparation of in silico drug screening projects
radiant (2.7+dfsg-1) [universe]
explore hierarchical metagenomic data with zoomable pie charts
rambo-k (1.21+dfsg-1) [universe]
Read Assignment Method Based On K-mers
rapmap (0.4.0+dfsg-2) [universe]
rapid sensitive and accurate DNA read mapping via quasi-mapping
rasmol (2.7.5.2-2) [universe]
Visualize biological macromolecules
rasmol-doc (2.7.5.2-2) [universe]
Documentation for rasmol
raster3d (3.0-3-2) [multiverse]
tools for generating images of proteins or other molecules
rate4site (3.0.0-4) [universe]
detector of conserved amino-acid sites
rawtran (0.3.8-2build2) [universe]
RAW photo to FITS converter
raxml (8.2.9+dfsg-1) [universe]
Randomized Axelerated Maximum Likelihood of phylogenetic trees
ray (2.3.1-4build1) [universe]
de novo genome assemblies of next-gen sequencing data
ray-extra (2.3.1-4build1) [universe]
Scripts and XSL sheets for post-processing for ray
rdkit-data (201603.5-2) [universe]
Collection of cheminformatics and machine-learning software (data files)
rdp-classifier (2.10.2-1) [universe]
extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
readseq (1-11) [universe]
Conversion between sequence formats
reapr (1.0.18+dfsg-3) [universe]
universal tool for genome assembly evaluation
relion-bin (1.4+dfsg-2build1) [universe]
toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+gui (1.4+dfsg-2build1) [universe]
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi (1.4+dfsg-2build1) [universe]
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi+gui (1.4+dfsg-2build1) [universe]
parallel toolkit for 3D reconstructions in cryo-electron microscopy
repeatmasker-recon (1.08-3) [universe]
finds repeat families from biological sequences
reprof (1.0.1-4) [universe]
protein secondary structure and accessibility predictor
rivet (1.8.3-2) [universe]
Robust Independent Validation of Experiment and Theory
rivet-plugins (1.8.3-2) [universe]
Analysis plugins of Rivet
rivet-plugins-data (1.8.3-2) [universe]
Data files of Rivet analysis plugins
rivet-plugins-dev (1.8.3-2) [universe]
Template generator of Rivet analysis plugin
rna-star (2.5.2b+dfsg-1) [universe]
ultrafast universal RNA-seq aligner
rnahybrid (2.1.2-1) [universe]
Fast and effective prediction of microRNA/target duplexes
roary (3.8.0+dfsg-1) [universe]
high speed stand alone pan genome pipeline
rocs (4:16.12.3-0ubuntu1) [universe]
graph theory IDE
rsem (1.2.31+dfsg-1) [universe]
RNA-Seq by Expectation-Maximization
rtax (0.984-5) [universe]
Classification of sequence reads of 16S ribosomal RNA gene
ruby-rgfa (1.3.1-1) [universe]
parse, edit and write GFA format graphs in Ruby
saga (2.3.1+dfsg-3build1) [universe]
System for Automated Geoscientific Analyses
saga-common (2.3.1+dfsg-3build1) [universe]
SAGA GIS architecture independent files
saint (2.5.0+dfsg-2) [universe]
Significance Analysis of INTeractome
salmon (0.7.2+ds1-2) [universe]
wicked-fast transcript quantification from RNA-seq data
samtools (1.3.1-3) [universe]
processing sequence alignments in SAM and BAM formats
samtools-test (1.3.1-3) [universe]
test files for the samtools package
saods9 (7.5+repack1-1) [universe]
Image display tool for astronomy
saods9-tclpackages (7.5+repack1-1) [universe]
Tcl/Tk packages provided with DS9
sat4j (2.3.5-0.2) [universe]
Efficient library of SAT solvers in Java
savi (1.5.0a-1) [universe]
satellite constellation visualisation
sbmltoolbox (4.1.0-3) [universe]
libsbml toolbox for octave and matlab
scamp (2.0.4-3) [universe]
Compute astrometric and photometric solutions
science-distributedcomputing (1.4ubuntu11) [universe]
Debian Science Distributed Computing packages
science-electrophysiology (1.4ubuntu11) [universe]
Debian Science packages for Electrophysiology
science-highenergy-physics (1.4ubuntu11) [universe]
Debian Science High Energy Physics packages
science-highenergy-physics-dev (1.4ubuntu11) [universe]
Debian Science High Energy Physics development packages
science-machine-learning (1.4ubuntu11) [universe]
Debian Science Machine Learning packages
science-nanoscale-physics (1.4ubuntu11) [universe]
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (1.4ubuntu11) [universe]
Debian Science Nanoscale Physics development packages
science-neuroscience-modeling (1.4ubuntu11) [universe]
Debian Science packages for modeling of neural systems
science-physics-dev (1.4ubuntu11) [universe]
Debian Science Physics-dev packages
science-psychophysics (1.4ubuntu11) [universe]
Debian Science packages for Psychophysics
science-simulations (1.4ubuntu11) [universe]
Debian Science Simulation packages
scram (0.11.5-1) [universe]
Probabilistic Risk Analysis Tool
scrm (1.7.2-1) [universe]
simulator of evolution of genetic sequences
sctk (2.4.10-20151007-1312Z+dfsg2-3) [universe]
speech recognition scoring toolkit
scythe (0.994-3) [universe]
Bayesian adaptor trimmer for sequencing reads
sdrangelove (0.0.1.20150707-2build2) [universe]
Osmocom Software Defined Radio
seaview (1:4.6.1.2-2) [multiverse]
Multiplatform interface for sequence alignment and phylogeny
seelablet (1.0.6-1) [universe]
python library and scripts for SEELablet experiment box
seelablet-common (1.0.6-1) [universe]
common files for SEELablet
seer (1.1.2-1) [universe]
genomic sequence element (kmer) enrichment analysis
seq-gen (1.3.3-1) [universe]
simulate the evolution of nucleotide or amino acid sequences
seqprep (1.3.2-1) [universe]
stripping adaptors and/or merging paired reads of DNA sequences with overlap
seqprep-data (1.3.2-1) [universe]
example data set for seqprep - only used for testing
seqtk (1.2-1) [universe]
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sextractor (2.19.5+dfsg-4) [universe]
Source extractor for astronomical images
sga (0.10.15-2) [universe]
de novo genome assembler that uses string graphs
shelxle (1.0.816-1) [universe]
graphical user interface for SHELXL
shogun-cmdline-static (3.2.0-7.4) [universe]
Large Scale Machine Learning Toolbox
sibsim4 (0.20-2) [universe]
align expressed RNA sequences on a DNA template
sickle (1.33-1) [universe]
windowed adaptive trimming tool for FASTQ files using quality
sift (4.0.3b-4) [multiverse]
predicts if a substitution in a protein has a phenotypic effect
sigma-align (1.1.3-4) [universe]
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.5.1+svn556-5) [universe]
GUI viewer for biosignals such as EEG, EMG, and ECG
sim4 (0.0.20121010-4) [universe]
tool for aligning cDNA and genomic DNA
sim4db (0~20150903+r2013-3) [universe]
batch spliced alignment of cDNA sequences to a target genome
simgrid-java (3.13-1) [universe]
Java bindings for the SimGrid Toolkit
siril (0.9.5-2build1) [universe]
astronomical image processing tool
skycat (3.1.2+starlink1~b+dfsg-2build3) [universe]
Image visualization and access to catalogs and data for astronomy
slang-xfig (0.2.0~.35-2) [universe]
produce plots and drawings through Xfig's fig2dev in S-Lang
sleepyhead (1.0.0-beta-2+dfsg-2) [universe]
Sleep tracking software with a focus on monitoring CPAP treatment
smalt (0.7.6-6) [universe]
Sequence Mapping and Alignment Tool
smalt-examples (0.7.6-6) [universe]
Sequence Mapping and Alignment Tool (examples)
smithwaterman (0.0+20160702-1) [universe]
determine similar regions between two strings or genomic sequences
smrtanalysis (0~20161126) [universe]
software suite for single molecule, real-time sequencing
snakemake (3.10.0-1) [universe]
pythonic workflow management system
snap (2013-11-29-6) [universe]
location of genes from DNA sequence with hidden markov model
snap-aligner (1.0~beta.18+dfsg-1ubuntu1) [universe]
Scalable Nucleotide Alignment Program
snaphu (1.4.2-2) [multiverse]
Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
sniffles (1.0.2+ds-1) [universe]
structural variation caller using third-generation sequencing
snp-sites (2.3.2-1) [universe]
Binary code for the package snp-sites
snpomatic (1.0-3) [universe]
fast, stringent short-read mapping software
soapdenovo (1.05-3) [universe]
short-read assembly method to build de novo draft assembly
soapdenovo2 (240+dfsg1-2) [universe]
short-read assembly method to build de novo draft assembly
sortmerna (2.1-1) [universe]
tool for filtering, mapping and OTU-picking NGS reads
spaced (1.0.2+dfsg-1) [universe]
alignment-free sequence comparison using spaced words
spades (3.9.1+dfsg-1) [universe]
genome assembler for single-cell and isolates data sets
spass (3.7-4) [universe]
automated theorem prover for first-order logic with equality
spatialite-bin (4.3.0-2build1) [universe]
Geospatial extension for SQLite - tools
spd (1.3.0-1ubuntu1) [universe]
Synchrotron image corrections and azimuthal integration
splash (2.6.0-2) [universe]
Visualisation tool for Smoothed Particle Hydrodynamics simulation
sprai (0.9.9.22+dfsg-1) [universe]
single-pass sequencing read accuracy improver
spread-phy (1.0.7+dfsg-1) [multiverse]
analyze and visualize phylogeographic reconstructions
squizz (0.99c+dfsg-1) [universe]
Converter for genetic sequences and alignments
sra-toolkit (2.3.5-2+dfsg-1ubuntu1) [universe]
utilities for the NCBI Sequence Read Archive
sra-toolkit-libs-dev (2.3.5-2+dfsg-1ubuntu1) [universe]
Development files for the NCBI SRA Toolkit's libraries
sra-toolkit-libs0 (2.3.5-2+dfsg-1ubuntu1) [universe]
Libraries for the SRA Toolkit
srst2 (0.2.0-2) [universe]
Short Read Sequence Typing for Bacterial Pathogens
ssake (3.8.4-1) [universe]
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.8.4-1) [universe]
example data for SSAKE, a genomic assembler of short reads
sspace (2.1.1+dfsg-2) [universe]
scaffolding pre-assembled contigs after extension
ssw-align (1.1-1) [universe]
Smith-Waterman aligner based on libssw
stacks (1.44-2) [universe]
pipeline for building loci from short-read DNA sequences
stacks-web (1.44-2) [universe]
web interface for displaying loci from short-read sequences
staden (2.0.0+b11-2) [universe]
DNA sequence assembly (Gap4/Gap5), editing and analysis tools
staden-common (2.0.0+b11-2) [universe]
Architecture independent files for Staden
staden-io-lib-examples (1.14.8-2) [universe]
programs for maniuplating DNA sequencing files (usage examples)
staden-io-lib-utils (1.14.8-2) [universe]
programs for maniuplating DNA sequencing files
stardata-common (0.8) [universe]
Common framework to manage astronomy packages
starplot (0.95.5-8.2) [universe]
3-dimensional perspective star map viewer
starpu-contrib-examples (1.2.0+dfsg-4) [multiverse]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples (1.2.0+dfsg-4) [universe]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples
virtual package provided by starpu-contrib-examples
stellarium (0.15.0-1) [universe]
real-time photo-realistic sky generator
stellarium-data (0.15.0-1) [universe]
Stellarium data files
stiff (2.4.0-2) [universe]
convert scientific FITS images to the TIFF format
stimfit (0.15.4-1) [universe]
Program for viewing and analyzing electrophysiological data
subread (1.5.1+dfsg-4) [universe]
toolkit for processing next-gen sequencing data
subread-data (1.5.1+dfsg-4) [universe]
data files for subread package
suitename (0.3.070628-1) [universe]
categorize each suite in an RNA backbone
sumaclust (1.0.20-1) [universe]
fast and exact clustering of genomic sequences
sumatra (1.0.20-1) [universe]
fast and exact comparison and clustering of sequences
sumo (0.28.0+dfsg1-1build1) [universe]
Simulation of Urban MObility (SUMO)
surankco (0.0.r5+dfsg-1) [universe]
Supervised Ranking of Contigs in de novo Assemblies
survex (1.2.30-1build1) [universe]
cave surveying and mapping software
survex-aven (1.2.30-1build1) [universe]
sophisticated cave survey viewer for Survex
swarm (2.1.12+dfsg-1) [universe]
robust and fast clustering method for amplicon-based studies
swarp (2.38.0+dfsg-3) [universe]
Resample and co-add together FITS images
swarp
virtual package provided by suckless-tools
swe-basic-data (1.80.00.0002-1ubuntu1) [universe]
basic data files for the libswe package
swe-standard-data (00004-1) [universe]
standard data for the Swiss Ephemeris
synphot-data (0.9.8.5+dfsg-1) [universe]
Optional data files for pysynphot
syrthes (4.3.0-dfsg1-2) [universe]
Transient thermal simulations in complex solid geometries
syrthes-gui (4.3.0-dfsg1-2) [universe]
Transient thermal simulations in complex solid geometries - GUI
syrthes-tests (4.3.0-dfsg1-2) [universe]
Test cases for SYRTHES
syrthes-tools (4.3.0-dfsg1-2) [universe]
Transient thermal simulations in complex solid geometries - tools
t-coffee (11.00.8cbe486-5) [universe]
Multiple Sequence Alignment
t-coffee-examples (11.00.8cbe486-5) [universe]
annotated examples for the use of T-Coffee
tabix (1.3.2-2ubuntu1) [universe]
generic indexer for TAB-delimited genome position files
tandem-mass (1:20151215-4) [universe]
mass spectrometry software for protein identification
tantan (13-4) [universe]
low complexity and tandem repeat masker for biosequences
tcd-utils (20061127-2) [universe]
convert Tide Constituent Database (TCD) files
tcl-fitstcl (2.4-3build1) [universe]
Tcl interface to FITS files
terraintool (1.12a-1) [universe]
Generates survex format terrain models from SRTM and ASTER data
tessa (0.3.1-6.2) [universe]
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-6.2) [universe]
simulation of 3D optical systems using FDTD on MPI clusters
thepeg (1.8.0-3) [universe]
Toolkit for High Energy Physics Event Generation
thepeg-gui (1.8.0-3) [universe]
Java GUI of ThePEG
thepeg-reference (1.8.0-3) [universe]
Code reference of ThePEG
therion (5.3.16-10build2) [universe]
Cave surveying - 2D and 3D drawing software
therion-doc (5.3.16-10build2) [universe]
Documentation for Therion Cave surveying software
therion-viewer (5.3.16-10build2) [universe]
Cave surveying - 3D viewer for therion models
theseus (3.3.0-5) [universe]
superimpose macromolecules using maximum likelihood
theseus-examples (3.3.0-5) [universe]
superimpose macromolecules using maximum likelihood (examples)
tigr-glimmer (3.02b-1) [universe]
Gene detection in archea and bacteria
timbl (6.4.8-1) [universe]
Tilburg Memory Based Learner
timblserver (1.11-1) [universe]
Server extensions for Timbl
tksao (7.5+repack1-1) [universe]
Tk widgets for astronomical imaging and data visualization
tm-align (20160521+dfsg-2) [universe]
structural alignment of proteins
tophat (2.1.1+dfsg-2build2) [universe]
fast splice junction mapper for RNA-Seq reads
topp (2.0.0-4build3) [universe]
set of programs implementing The OpenMS Proteomic Pipeline
toppred (1.10-4) [universe]
transmembrane topology prediction
toulbar2 (0.9.8-1) [universe]
Exact combinatorial optimization for Graphical Models
transcalc (0.14-6) [universe]
microwave and RF transmission line calculator
transdecoder (3.0.1+dfsg-1) [universe]
find coding regions within RNA transcript sequences
transrate-tools (1.0.0-1) [universe]
helper for transrate
transtermhp (2.09-3) [universe]
find rho-independent transcription terminators in bacterial genomes
travis (161013-1) [universe]
trajectory analyzer and visualizer
tree-ppuzzle (5.2-8build2) [universe]
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-8build2) [universe]
Reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle-doc (5.2-8build2) [universe]
Reconstruction of phylogenetic trees by maximum likelihood (doc)
treeview (1.1.6.4+dfsg1-2) [multiverse]
Java re-implementation of Michael Eisen's TreeView
treeviewx (0.5.1+20100823-4) [universe]
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [multiverse]
High-quality 2-D mesh generator binary programs
trimmomatic (0.36+dfsg-1) [universe]
flexible read trimming tool for Illumina NGS data
trinityrnaseq (2.2.0+dfsg-2) [universe]
RNA-Seq De novo Assembly
trinityrnaseq-examples (2.2.0+dfsg-2) [universe]
RNA-Seq De novo Assembly common example and testing files
tunnelx (20160713-3) [universe]
Cave Survey drawing software
twms (0.05t-4) [universe]
tiny web map service
ubertooth (2015.09.R2-4) [universe]
2.4 GHz wireless development platform for Bluetooth experimentation
ubertooth-firmware (2015.09.R2-4) [universe]
Firmware for Ubertooth
ubertooth-firmware-source (2015.09.R2-4) [universe]
Source code for the Ubertooth firmware
uc-echo (1.12-9) [universe]
error correction algorithm designed for short-reads from NGS
ucto (0.9.6-1) [universe]
Unicode Tokenizer
uctodata (0.4-1) [universe]
Data files for Ucto
ugene (1.9.8+repack-0ubuntu4) [universe]
integrated bioinformatics toolkit
ugene-data (1.9.8+repack-0ubuntu4) [universe]
required data for UGENE - integrated bioinformatics toolkit
uhd-host (3.9.5-2) [universe]
universal hardware driver for Ettus Research products - host apps
units-filter (3.7-3) [universe]
Parser for expressions concerning physical values
utopia-documents (3.0.0-1) [universe]
PDF reader that displays interactive annotations on scientific articles
v-sim (3.7.2-2) [universe]
Visualize atomic structures
v-sim-common (3.7.2-2) [universe]
Visualize atomic structures (support files)
v-sim-plugins (3.7.2-2) [universe]
Plugins for V_Sim (a 3D visualization package)
varna (3-93+ds-1) [universe]
Visualization Applet for RNA
varscan (2.4.3+dfsg-1) [multiverse]
variant detection in next-generation sequencing data
vcftools (0.1.14+dfsg-4) [universe]
Collection of tools to work with VCF files
velvet (1.2.10+dfsg1-3) [universe]
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg1-3) [universe]
Example data for the Velvet sequence assembler
velvet-long (1.2.10+dfsg1-3) [universe]
Nucleic acid sequence assembler for very short reads, long version
velvet-tests (1.2.10+dfsg1-3) [universe]
Test data for the Velvet sequence assembler
velvetoptimiser (2.2.5-5) [universe]
automatically optimise Velvet do novo assembly parameters
veusz (1.21.1-1) [universe]
2D scientific plotting application with graphical interface
veusz-helpers (1.21.1-1) [universe]
Architecture-specific helper module for Veusz
viewmol (2.4.1-24) [universe]
graphical front end for computational chemistry programs
visp-images-data (3.0.1-1) [universe]
visual servoing library - dataset reference files
vistrails (2.2.4-1) [universe]
Science visualisation workflow toolkit
vmtk (1.3+dfsg-2.1) [multiverse]
the Vascular Modeling Toolkit
voro++ (0.4.6+dfsg1-2) [universe]
library for the computation of the Voronoi diagram
voro++-examples (0.4.6+dfsg1-2) [universe]
library for the computation of the Voronoi diagram (examples)
votca-csg (1.3.0-3build1) [universe]
VOTCA's coarse-graining engine
votca-csg-scripts (1.3.0-3build1) [universe]
VOTCA's coarse-graining scripts
votca-csg-tutorials (1.3.0-3build1) [universe]
VOTCA's coarse-graining tutorials
vowpal-wabbit (8.1.1-1build3) [universe]
fast and scalable online machine learning algorithm
voxbo (1.8.5~svn1246-2build3) [universe]
processing, statistical analysis, and display of brain imaging data
vsearch (2.3.4-1) [universe]
tool for processing metagenomic sequences
wcslib-tools (5.16-1) [universe]
Command line tools utilizing wcslib
wcstools (3.9.4-2) [universe]
Handle the WCS of a FITS image
weightwatcher (1.12-1) [universe]
Combine maps and polygon data for astronomical image processing
weka (3.6.14-1) [universe]
Machine learning algorithms for data mining tasks
wfrog (0.8.2+svn973-1) [universe]
Web-based customizable weather station software
wigeon (20101212+dfsg1-1) [universe]
reimplementation of the Pintail 16S DNA anomaly detection utility
wise (2.4.1-19) [universe]
comparison of biopolymers, like DNA and protein sequences
wsclean (2.2.1-1) [universe]
Fast generic widefield interferometric imager
wxastrocapture (1.8.1+git20140821+dfsg-1build1) [universe]
Windows linuX Astronomy Capture
xbs (0-10) [universe]
3-d models and movies of molecules
xcas (1.2.3.25+dfsg1-2) [universe]
Computer Algebra System - console and graphical calculator
xcrysden (1.5.60-1build1) [universe]
Crystalline and Molecular Structure Visualizer
xcrysden-data (1.5.60-1build1) [universe]
Crystalline and Molecular Structure Visualizer (Data Files)
xdrawchem (2.0-6) [universe]
Chemical structures and reactions editor
xflr5 (6.09.06-2build1) [universe]
analysis tool for airfoils
xfoil (6.99.dfsg-2) [universe]
program for the design and analysis of subsonic airfoils
xmakemol (5.16-9) [universe]
program for visualizing atomic and molecular systems
xmakemol-gl (5.16-9) [universe]
program for visualizing atomic and molecular systems (OpenGL)
xmds2 (2.2.3+dfsg-1) [universe]
eXtensible Multi-Dimensional Simulator
xpa-tools (2.1.18-1) [universe]
Tools for seamless communication between Unix programs
xplot (1.19-9build1) [universe]
simple on-screen x-y column data plotter
xplot-xplot.org (0.90.7.1-3) [universe]
fast tool to graph and visualize lots of data
xppaut (6.11b+1.dfsg-1) [universe]
Phase Plane Plus Auto: Solves many kinds of equations
xtide (2.13.2-1build1) [universe]
provides tide and current predictions
xtide-coastline (20020202-1) [universe]
coastline data for xtide
xtide-data (20100529-1) [universe]
Harmonics data for xtide
xtide-data-nonfree (20100529-1) [multiverse]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xyscan (3.33-1) [universe]
data thief for scientists
yade (2017.01a-7) [universe]
Platform for discrete element modeling
yagv (0.4~20130422.r5bd15ed+dfsg-1) [universe]
yet another G-code viewer
yorick-av (0.0.4-1) [universe]
write movies from Yorick in various formats
yorick-full (2.2.04+dfsg1-6build1) [universe]
full installation of the Yorick interpreter and add-ons
yorick-gy (0.0.5-1) [universe]
GObject introspection and Gtk bindings for Yorick
yorick-gyoto (1.2.0-2ubuntu2) [universe]
General relativistic geodesic integration for the Yorick language
yorick-mira (1.1.0+git20170124.3bd1c3~dfsg1-1) [universe]
optical interferometry image reconstruction within Yorick
yorick-mpeg (0.1-3) [universe]
MPEG output support for the Yorick language
yorick-mpy-common (2.2.04+dfsg1-6build1) [universe]
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.04+dfsg1-6build1) [universe]
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.04+dfsg1-6build1) [universe]
Message Passing Yorick (OpenMPI build)
yorick-svipc (0.16-2build2) [universe]
interprocess communication (shared memory...) for Yorick
yorick-ygsl (1.2.1-1) [universe]
GSL special functions plugin for the Yorick language
yorick-ynfft (1.0.3-1) [universe]
nonequispaced fast Fourier transform for Yorick
z3 (4.4.1-0.3build2) [universe]
theorem prover from Microsoft Research
z88 (13.0.0+dfsg2-4) [universe]
Finite Element Analysis Program - runtime
zalign (0.9.1-2build2) [universe]
parallel local alignment of biological sequences
zegrapher (3.0-2) [universe]
plotting mathematical functions and sequences on the plane
zimpl (3.3.2-1) [universe]
mathematical modeling language for optimization problems
ztex-bmp (20120314-2) [universe]
universal macro processor