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属于 "quantal" 发行版 science 子版面的软件包

3depict (0.0.10-1) [universe]
visualisation and analysis for single valued point data
abacas (1.3.1-1) [universe]
Algorithm Based Automatic Contiguation of Assembled Sequences
abinit (5.3.4.dfsg-3build2) [universe]
A package for electronic structure calculations
abinit-doc (5.3.4.dfsg-3build2) [universe]
A package for electronic structure calculations
abyss (1.3.4-2) [multiverse]
de novo, parallel, sequence assembler for short reads
acedb-other (4.9.39+dfsg.01-5) [universe]
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.01-5) [universe]
multiple sequence alignment editor
acedb-other-dotter (4.9.39+dfsg.01-5) [universe]
visualisation of sequence similarity
aces3 (3.0.6-5) [universe]
Advanced Concepts in Electronic Structure III
achilles (2-8) [universe]
An artificial life and evolution simulator
adun.app (0.81-5) [universe]
Molecular Simulator for GNUstep
aeskulap (0.2.2b1-11ubuntu1) [universe]
medical image viewer and DICOM network client
aghermann (0.6.0.1-1build1) [universe]
Sleep-research experiment manager
algotutor (0.8.6-1) [universe]
program for observing the intermediate steps of algorithm
alien-hunter (1.7-1) [universe]
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.2.1-1) [universe]
program to perform phylogeny-based association and localization analysis
altree-examples (1.2.1-1) [universe]
example files for ALTree
amap-align (2.2-3) [universe]
Protein multiple alignment by sequence annealing
ampliconnoise (1.25-1) [universe]
Programs for the removal of noise from 454 sequenced PCR amplicons
ants (1.9.2+svn680.dfsg-4) [universe]
advanced normalization tools for brain and image analysis
apbs (1.3.0-2) [universe]
Adaptive Poisson Boltzmann Solver
arb (5.3-4ubuntu2) [multiverse]
Integrated package for sequence database handling and analysis
arb-common (5.3-4ubuntu2) [multiverse]
Integrated package for sequence database handling and analysis
astronomical-almanac (5.6-4) [universe]
astronomical almanac - calculate planet and star positions
autodock (4.2.3-2) [universe]
analysis of ligand binding to protein structure
autodock-getdata (4.2.3-2) [universe]
instructions for getData to collect compounds
autodock-test (4.2.3-2) [universe]
test files for AutoDock
autodock-vina (1.1.2-2build1) [universe]
docking of small molecules to proteins
autodocktools (1.5.6~rc3~cvs.20120206-1) [multiverse]
GUI to help set up, launch and analyze AutoDock dockings
autogrid (4.2.3-2) [universe]
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.3-2) [universe]
test files for AutoGrid
avce00 (2.0.0-2) [universe]
Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.
avogadro (1.0.3-5ubuntu2) [universe]
Molecular Graphics and Modelling System
avogadro-data (1.0.3-5ubuntu2) [universe]
Molecular Graphics and Modelling System (Data Files)
aweather (0.7-1ubuntu1) [universe]
Advanced Weather Monitoring Program
ballview (1.4.1+20111206-4ubuntu1) [universe]
free molecular modeling and molecular graphics tool
bauble (0.9.7-2) [universe]
biodiversity collection manager software application
beast-mcmc (1.6.2-2ubuntu1) [multiverse]
Bayesian MCMC phylogenetic inference
beast-mcmc-lib (1.6.2-2ubuntu1) [multiverse]
Bayesian MCMC phylogenetic inference
bedtools (2.16.1-1) [universe]
suite of utilities for comparing genomic features
bibus (1.5.2-1) [universe]
bibliographic database
biogenesis (0.8-1ubuntu1) [universe]
artificial life program that simulates evolution of organisms
biomaj (1.2.0-9) [universe]
biological data-bank updater
biomaj-properties (1.2.0-9) [universe]
biological data-bank updater - example properties files
biomaj-watcher (1.2.0-8ubuntu1) [multiverse]
biological data-bank updater - web interface
bioperl (1.6.901-3) [universe]
Perl tools for computational molecular biology
bioperl-run (1.6.9-1) [universe]
BioPerl wrappers: scripts
biosig-tools (1.3.0-2) [universe]
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-2) [universe]
utilities for biological sequence analysis
bist (0.5.2-1) [universe]
chemical drawing tool
bkchem (0.13.0-4) [universe]
Chemical structures editor
blast2 (1:2.2.26.20120620-2) [universe]
Basic Local Alignment Search Tool
blimps-utils (3.9-1) [multiverse]
blocks database improved searcher
blinken (4:4.9.2-0ubuntu1) [universe]
KDE version of the Simon electronic memory game
bodr (9-1) [universe]
Blue Obelisk Data Repository
boinc-app-milkyway (0.18d-1.1) [universe]
Milkyway@home application for the BOINC client
boinc-app-seti (6.12~svn1305-2ubuntu1) [universe]
SETI@home application for the BOINC client
boolector (1.4.ffc2089.100608-1) [universe]
SMT solver for bit-vectors and arrays
bowtie (0.12.7-3) [universe]
ultrafast memory-efficient short read aligner
bowtie-examples (0.12.7-3) [universe]
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.0.0-beta6-3ubuntu1) [universe]
ultrafast memory-efficient short read aligner
bowtie2-examples (2.0.0-beta6-3ubuntu1) [universe]
Examples for bowtie2,
boxshade (3.3.1-7) [universe]
Pretty-printing of multiple sequence alignments
bppphyview (0.2.1-1) [universe]
Bio++ Phylogenetic Viewer
bppsuite (0.7.0-1) [universe]
Bio++ program suite
bwa (0.6.2-1) [universe]
Burrows-Wheeler Aligner
cain (1.9-6) [universe]
simulations of chemical reactions
cain-examples (1.9-6) [universe]
simulations of chemical reactions
cain-solvers (1.9-6) [universe]
simulations of chemical reactions
caret (5.6.4~dfsg.1-3ubuntu2) [universe]
Computerized Anatomical Reconstruction and Editing Toolkit
cba (0.3.6-4) [universe]
Continuous Beam Analysis
cbflib-bin (0.7.9.1-3build1) [universe]
utilities to manipulate CBF files
cbmc (4.1-1.2) [universe]
bounded model checker for C and C++ programs
cclib (1.0.1-2) [universe]
Parsers and algorithms for computational chemistry
cclib-data (1.0.1-3) [multiverse]
Parsers and algorithms for computational chemistry (data files)
cd-hit (4.6-2012-04-25-1) [universe]
suite of programs designed to quickly group sequences
celestia-common (1.6.1+dfsg-2ubuntu1) [universe]
datafiles for Celestia, a real-time visual space simulation
celestia-common-nonfree (1.6.1-1) [multiverse]
Non-free datafiles for Celestia, a real-time visual space simulation
celestia-glut (1.6.1+dfsg-2ubuntu1) [universe]
real-time visual space simulation (GLUT frontend)
cernlib (20061220+dfsg3-2) [universe]
CERNLIB data analysis suite - general use metapackage
cernlib-core (20061220+dfsg3-2) [universe]
CERNLIB data analysis suite - main libraries and programs
cernlib-core-dev (20061220+dfsg3-2) [universe]
CERNLIB data analysis suite - core development files
cernlib-extras (20061220+dfsg3-2) [universe]
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-1build1) [universe]
CERNLIB Monte Carlo libraries
cgns-convert (3.1.3.4-1) [universe]
CFD General Notation System - Conversion tools
chemical-structures (2.2.dfsg.0-8) [universe]
set of molecular structures in open formats
chemtool (1.6.13-1) [universe]
chemical structures drawing program
circos (0.61-1) [universe]
Package for visualizing data and information
circos-tools (0.16-2) [universe]
Helper tools for Circos
clinica (0.2.1~dfsg-1) [universe]
Simple medical records manager
clinica-common (0.2.1~dfsg-1) [universe]
Simple medical records manager (architecture independent files)
clinica-dev (0.2.1~dfsg-1) [universe]
Simple medical records manager (development files)
clinica-plugins (0.2.1~dfsg-1) [universe]
Simple medical records manager (plugins)
clonalframe (1.2-3) [universe]
inference of bacterial microevolution using multilocus sequence data
clustalo (1.1.0-1) [universe]
General purpose multiple sequence alignment program for proteins
clustalw (2.1+lgpl-2) [multiverse]
global multiple nucleotide or peptide sequence alignment
clustalw-mpi (0.15-2) [multiverse]
MPI-distributed global sequence alignment with ClustalW
clustalx (2.1+lgpl-2) [multiverse]
Multiple alignment of nucleic acid and protein sequences (graphical interface)
cmtk (2.2.2-1) [universe]
Computational Morphometry Toolkit
code-aster-gui (1.10.4-3) [universe]
Graphical user interface for Code_Aster - client
code-aster-run (1.10.4-3) [universe]
Graphical user interface for Code_Aster - server
code-saturne (2.1.7-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (2.1.7-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (2.1.7-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-include (2.1.7-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - includes
coinor-csdp (6.1.1-1) [universe]
A software package for semidefinite programming
coinor-libcgl0 (0.55.0-1.1) [universe]
Cut Generator Library, a library of cutting-plane generators
coinor-libclp0 (1.12.0-2.1) [universe]
Coin-or linear programming solver
coinor-libclp0-dbg (1.12.0-2.1) [universe]
Coin-or linear programming solver
coinor-libcoinutils0 (2.6.4-3) [universe]
Coin-or collection of utility classes
coinor-libcoinutils0-dbg (2.6.4-3) [universe]
Coin-or collection of utility classes
coinor-libdylp0 (1.6.0-1.1) [universe]
Linear programming solver using the dynamic simplex algorithm
coinor-libflopc++0 (1.0.6-3.1) [universe]
Formulation of Linear Optimization Problems in C++
coinor-libosi0 (0.103.0-1) [universe]
COIN-OR Open Solver Interface
coinor-libsymphony0 (5.2.4-1.2ubuntu1) [universe]
COIN-OR solver for mixed-integer linear programs
coinor-libvol0 (1.1.7-1) [universe]
Coin-or linear programming solver
condor (7.8.2~dfsg.1-1+deb7u1) [universe]
distributed workload management system
cp2k (2.2.426-6) [universe]
Ab Initio Molecular Dynamics
cp2k-data (2.2.426-6) [universe]
Ab Initio Molecular Dynamics (data files)
critterding (1.0-beta12.1-1.2) [universe]
Evolving Artificial Life
ctsim (5.2.0-1.1) [universe]
Computed tomography simulator
ctsim-help (5.2.0-1.1) [universe]
Online help file for CTSim
cufflinks (1.3.0-2ubuntu1) [multiverse]
Transcript assembly, differential expression and regulation for RNA-Seq
dans-gdal-scripts (0.18-1.1build1) [universe]
GDAL contributed tools by Geographic Information Network of Alaska
dcmtk (3.6.0-11build1) [universe]
OFFIS DICOM toolkit command line utilities
dialign (2.2.1-5) [universe]
Segment-based multiple sequence alignment
dialign-tx (1.0.2-2) [universe]
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-2) [universe]
Common data files for dialign-tx
dicomnifti (2.30.0-1) [universe]
converts DICOM files into the NIfTI format
dicompyler (0.4.1-1-1) [universe]
radiation therapy research platform
diet-agent (2.8.0-1) [universe]
DIET grid middleware - agent
dimbl (0.11-1) [universe]
Distributed Memory Based Learner
disulfinder (1.2.11-2) [universe]
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-2) [universe]
data files for predictor of disulfide bonds in proteins
dotur (1.53-2) [universe]
distance based OTU and richness estimation
dozzaqueux (3.21-4) [universe]
simulator for chemical mixtures
dozzaqueux-data (3.21-4) [universe]
databases for chemical mixtures
drawmap (2.5-3) [universe]
draws customized maps, using raw USGS data files
drawxtl (5.5-3) [universe]
crystal structure viewer
drslib (0.3.0a3-3) [universe]
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.1) [universe]
Software for Semidefinite Programming
dssp (2.0.4-2) [universe]
protein secondary structure assignment based on 3D structure
dx (1:4.4.4-4ubuntu1) [universe]
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.2.0-1) [universe]
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-2) [universe]
A program to read/write Arcinfo compressed E00 files
easychem (0.6-7) [universe]
Draw high-quality molecules and 2D chemical formulas
ecaccess (4.0.0-3) [universe]
clients to access ECMWF facilities
edfbrowser (1.48-1) [universe]
viewer for biosignal storage files such as bdf and edf
eficas (6.4.0-1-1.1) [universe]
Graphical editor for Code Aster command files
elastix (4.5-2) [universe]
toolbox for rigid and nonrigid registration of images
elki (0.5.0-1) [universe]
Data mining algorithm development framework
elmer (6.1.0.svn.5396.dfsg2-1) [universe]
finite element multiphysics suite - binaries
elmer-common (6.1.0.svn.5396.dfsg2-1) [universe]
finite element multiphysics suite - architecture-independent files
elmergui-samples (6.1.0.svn.5396.dfsg2-1) [universe]
ElmerGUI samples directory
embassy-domainatrix (0.1.0+20110714-1) [universe]
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.0+20110714-1) [universe]
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.0+20110714-1) [universe]
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.69+20110714-1) [multiverse]
EMBOSS conversions of the programs in the phylip package
emboss (6.4.0-4) [universe]
european molecular biology open software suite
emboss-data (6.4.0-4) [universe]
data files for the EMBOSS package
emboss-explorer (2.2.0-7) [universe]
web-based GUI to EMBOSS
engauge-digitizer (5.0-3) [universe]
interactively extracts numbers from bitmap graphs or maps
ent (1.1debian-2) [universe]
pseudorandom number sequence test program
epigrass (2.0.4-3) [universe]
scientific tool for simulations and scenario analysis in network epidemiology
epsilon-bin (0.9.1-2build1) [universe]
A library for wavelet image compression - tools
esorex (3.9.6-1) [universe]
Execution Tool for European Southern Observatory pipelines
esys-particle (2.1-4) [universe]
Software for particle-based numerical modelling. MPI version.
etsf-io (1.0.3-4build1) [universe]
Binary tools to check, merge and read ETSF files
exonerate (2.2.0-6) [universe]
generic tool for pairwise sequence comparison
expeyes (2.0.0-3) [universe]
hardware & software framework for developing science experiments
extrema (4.4.5.dfsg-3ubuntu1) [universe]
powerful visualization and data analysis tool
fastdnaml (1.2.2-10) [universe]
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix95-3) [universe]
faster version of pedigree programs of Linkage
fastlink-doc (4.1P-fix95-3) [universe]
Some papers about fastlink
fasttree (2.1.4-1) [universe]
phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit (0.0.13.2-1) [universe]
FASTQ/A short nucleotide reads pre-processing tools
fcc (2.7-1) [universe]
Script to compile C/C++ programs and link to Fortran libraries
feel++-apps (0.91.4-3) [universe]
A library for the finite element method
ffindex (0.9.6.1-1) [universe]
simple index/database for huge amounts of small files
figtree (1.3.1-2) [universe]
graphical phylogenetic tree viewer
filo (1.1+2011020401.2ubuntu1) [universe]
FILe and stream Operations
fityk (0.9.8-3) [universe]
general-purpose nonlinear curve fitting and data analysis
fractalnow (0.8.1-1) [universe]
Fast, advanced fractal generator
freeaccount (0.7.6-1) [universe]
medical accountancy manager
freecad (0.12.5284-dfsg-7ubuntu1) [universe]
Extensible Open Source CAx program (alpha)
freediams (0.7.6-1) [universe]
pharmaceutical drug prescription and interaction manager
freefoam (0.1.0+dfsg-1) [universe]
programs for Computational Fluid Dynamics (CFD)
freemedforms-common-resources (0.7.6-1) [universe]
common data for the FreeMedForms project applications
freemedforms-emr (0.7.6-1) [universe]
electronic medical record manager
freemedforms-emr-resources (0.7.6-1) [universe]
data for the FreeMedForms EMR
freemedforms-freedata (0.7.6-1) [universe]
free extra-data for the FreeMedForms project
freemedforms-i18n (0.7.6-1) [universe]
translations of the FreeMedForms project
freemedforms-libs (0.7.6-1) [universe]
common libs for the FreeMedForms project
freemedforms-project (0.7.6-1) [universe]
FreeMedForms project
freemedforms-theme (0.7.6-1) [universe]
theme for the FreeMedForms project
frog (0.12.15-3) [universe]
tagger and parser for Dutch language
frogdata (0.3-2) [universe]
Data files for Frog
fsl (4.1.9-4ubuntu1) [multiverse]
Metapackage for the latest version of FSL
fsl-4.1 (4.1.9-4ubuntu1) [multiverse]
analysis tools for FMRI, MRI and DTI brain imaging
funtools (1.4.4-3) [universe]
Minimal buy-in FITS utility package
fxt-tools (0.2.6-2) [universe]
Multithreaded tracing library
g3data (1:1.5.3-2) [universe]
extract data from scanned graphs
gabedit (2.4.3-1) [universe]
graphical user interface to Ab Initio packages
gamgi (0.15.8-1) [universe]
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.15.8-1) [universe]
General Atomistic Modelling Graphic Interface (data)
garlic (1.6-1.1) [universe]
A visualization program for biomolecules
gassst (1.28-2) [universe]
Global alignment short sequence search tool
gausssum (2.2.5-2) [universe]
parse and display Gaussian, GAMESS, and etc's output
gbrowse (2.48~dfsg-1) [universe]
GMOD Generic Genome Browser
gbrowse-calign (2.48~dfsg-1) [universe]
CAlign helper
gbrowse-data (2.48~dfsg-1) [universe]
Sample data to use GBrowse
gchempaint (0.12.10-1ubuntu2) [universe]
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.12.10-1ubuntu2) [universe]
lightweight crystal structures visualizer
gcu-bin (0.12.10-1ubuntu2) [universe]
GNOME chemistry utils (helper applications)
gcu-plugin (0.12.10-1ubuntu2) [universe]
GNOME chemistry utils (browser plugin)
gcx (1.3-1.1) [universe]
astronomical image processing and photometry gtk+ application
gdal-bin (1.9.0-3.1ubuntu1) [universe]
Geospatial Data Abstraction Library - Utility programs
gdis (0.90-4) [universe]
molecular and crystal model viewer
gdis-data (0.90-4) [universe]
molecular and crystal model viewer (data files)
gdpc (2.2.5-2) [universe]
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-2) [universe]
example files for the gdpc program
geant321 (1:3.21.14.dfsg-9build1) [universe]
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-9build1) [universe]
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-8ubuntu1) [universe]
Periodic Table viewer
gelemental-dbg (1.2.0-8ubuntu1) [universe]
Periodic Table viewer (main application debugging symbols)
gentle (1.9+cvs20100605+dfsg-3build1) [multiverse]
suite to plan genetic cloning
geographiclib-tools (1.21-1) [universe]
A C++ library to solve some geodesic problems -- tools
geotiff-bin (1.3.0+dfsg-3) [universe]
the GeoTIFF library -- tools
gerris-mpi (20110329-dfsg.2-1build1) [universe]
Gerris Flow Solver
getdata (0.1-1) [universe]
management of external databases
gff2aplot (2.0-7) [universe]
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-4) [universe]
produces PostScript graphical output from GFF-files
ghkl (4.0.3-4) [universe]
diffractometer computation control application
ginkgocadx (2.12.0.4889-1ubuntu1) [universe]
Medical Imaging Software and complete DICOM Viewer
glam2 (1064-1) [universe]
gapped protein motifs from unaligned sequences
gmap (2012-06-12-1ubuntu1) [multiverse]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (4.5.7-2build1) [universe]
Generic Mapping Tools
gmt-doc-pdf (4.5.7-2build1) [universe]
PDF docs for GMT, the Generic Mapping Tools
gmt-tutorial (3.4-1.1) [universe]
Data files needed to reproduce the tutorial examples of GMT
gmt-tutorial-pdf (4.5.7-2build1) [universe]
Tutorial for GMT, the Generic Mapping Tools (PDF)
gofigure2 (0.9.0-1build1) [universe]
Tool for visualizing, processing and analysing of bioimages
gperiodic (2.0.10-7) [universe]
periodic table application
gpiv (0.6.1-2) [universe]
GUI program for Particle Image Velocimetry
gpiv-mpi (0.6.1-2) [universe]
GUI program for Particle Image Velocimetry - MPI version
gpivtools (0.6.0-3) [universe]
command line programs for Particle Image Velocimetry
gpivtools-mpi (0.6.0-3) [universe]
command line programs for Particle Image Velocimetry - MPI version
gpx2shp (0.69-3.1) [universe]
convert GPS or GPX file to ESRI Shape file
grads (2.0.a9-4build1) [universe]
Grid Analysis and Display System for earth science data
grass (6.4.2-2build1) [universe]
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (6.4.2-2build1) [universe]
GRASS GIS core components
grass-doc (6.4.2-2build1) [universe]
GRASS GIS user documentation
grass-gui (6.4.2-2build1) [universe]
GRASS GIS graphical user interfaces
gri (2.12.23-2.1) [universe]
a language for scientific illustration
gri-el (2.12.23-2.1) [universe]
Emacs major-mode for gri, a language for scientific graphics
grinder (0.4.5-1) [universe]
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (4.5.5-2) [universe]
Molecular dynamics simulator, with building and analysis tools
gromacs-data (4.5.5-2) [universe]
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (4.5.5-2) [universe]
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (4.5.5-2) [universe]
Molecular dynamics sim, binaries for OpenMPI parallelization
gvb (1.2.1-1) [universe]
visual simulator of 1 and 2-dimensional vibrations
gwyddion (2.28-2ubuntu1) [universe]
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.28-2ubuntu1) [universe]
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.28-2ubuntu1) [universe]
plugins for Gwyddion SPM analysis tool
gyoto (0.0.3-5ubuntu2) [universe]
General relativistic ray-tracing
h5utils (1.12.1-2) [universe]
HDF5 files visualization tools
harminv (1.3.1-8) [universe]
extraction of complex frequencies and amplitudes from time series
hdf5-helpers (1.8.8-9) [universe]
Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools (1.8.8-9) [universe]
Hierarchical Data Format 5 (HDF5) - Runtime tools
hhsuite (2.0.15-1) [universe]
sensitive protein sequence searching based on HMM-HMM alignment
hmmer (3.0-4) [universe]
profile hidden Markov models for protein sequence analysis
hodie (1.5-1) [universe]
prints the date in latin
horae (071~svn536-1) [multiverse]
interactive graphical processing and analysis of EXAFS data
hpcc (1.4.1-2) [universe]
HPC Challenge benchmark
ifeffit (2:1.2.11d-8) [multiverse]
Interactive XAFS analysis program
ifrit (3.3.4-3ubuntu1) [universe]
powerful tool for visualizing 3-dimensional data sets
igv (2.0.30-1ubuntu1) [multiverse]
Integrative Genomics Viewer
imagej (1.47a-1) [universe]
Image processing program inspired by NIH Image for the Macintosh
imagevis3d (2.0.1-5ubuntu1) [universe]
desktop volume rendering application for large data
imview (1.1.9c-9ubuntu1) [universe]
Image viewing and analysis application
indigo-utils (1.0.0-2) [universe]
Organic Chemistry Toolkit Utilities
infernal (1.0.2-2) [universe]
inference of RNA secondary structural alignments
itksnap (2.2.0-1.1) [universe]
semi-automatic segmentation of structures in 3D images
jalview (2.7.dfsg-2) [universe]
multiple alignment editor
jblas (1.2.0-4) [universe]
fast linear algebra library for Java
jellyfish (1.1.5-1) [universe]
count k-mers in DNA sequences
jemboss (6.4.0-4) [universe]
graphical user interface to EMBOSS
jmol (12.2.32+dfsg-1) [universe]
Molecular Viewer
kalign (1:2.03+20110620-2) [universe]
Global and progressive multiple sequence alignment
kalzium (4:4.9.2-0ubuntu1) [universe]
periodic table and chemistry tools for KDE
kalzium-data (4:4.9.2-0ubuntu1) [universe]
data files for Kalzium
klustakwik (2.0.1-1) [universe]
automatic sorting of the samples (spikes) into clusters
kst (2.0.3-1.2) [universe]
scientific data plotting tool
kst-data (2.0.3-1.2) [universe]
set of data files for kst
kstars (4:4.9.2-0ubuntu1) [universe]
desktop planetarium for KDE
kstars-data (4:4.9.2-0ubuntu1) [universe]
data files for KStars desktop planetarium
kstars-data-extra-tycho2 (1.1r1-5.1) [universe]
Tycho-2 star catalog for KStars
kxterm (20061220+dfsg3-2) [universe]
CERNLIB data analysis suite - KUIP terminal emulator
lammps (0~20120615.gite442279-1) [universe]
Molecular Dynamics Simulator.
last-align (199-1) [universe]
genome-scale comparison of biological sequences
lhapdf-pdfsets-minimal (5.8.7+repack-1) [universe]
Minimal PDF Sets of LHAPDF
libarb (5.3-4ubuntu2) [multiverse]
Integrated package for sequence database handling and analysis
libball1.4 (1.4.1+20111206-4ubuntu1) [universe]
Biochemical Algorithms Library
libball1.4-data (1.4.1+20111206-4ubuntu1) [universe]
Biochemical Algorithms Library
libballview1.4 (1.4.1+20111206-4ubuntu1) [universe]
Biochemical Algorithms Library, VIEW framework
libbiojava-java (1:1.7.1-2) [universe]
Java API to biological data and applications (default version)
libbiojava-java-demos (1:1.7.1-2) [universe]
Example programs for BioJava
libbiojava1.7-java (1:1.7.1-2) [universe]
Java API to biological data and applications (version 1.7)
libclassad3 (7.8.2~dfsg.1-1+deb7u1) [universe]
Condor classads expression language - runtime library
libclhep2.1 (2.1.2.3-1) [universe]
CLHEP: A Class Library for High Energy Physics
libclinica0 (0.2.1~dfsg-1) [universe]
Simple medical records manager (shared library)
libgeotiff-epsg (1.3.0-1) [multiverse]
the GeoTIFF library -- EPSG Geodetic Parameter Dataset
libghemical-data (3.0.0-2) [universe]
Molecular Modelling Library (data files)
libgofigure0 (0.9.0-1build1) [universe]
Tool for visualizing, processing and analysing of bioimages
libgrits4 (0.7-1) [universe]
Grits is a Virtual Globe library
libgyoto0 (0.0.3-5ubuntu2) [universe]
General relativistic geodesic integration and ray-tracing
libhkl4 (4.0.3-4) [universe]
diffractometer computation control library
libkst2core2 (2.0.3-1.2) [universe]
kst core library
libkst2math2 (2.0.3-1.2) [universe]
kst math library
libkst2widgets2 (2.0.3-1.2) [universe]
kst widgets library
liblas-bin (1.2.1-5) [universe]
ASPRS LiDAR data translation toolset
liblinear-tools (1.8+dfsg-1ubuntu1)
Standalone applications for LIBLINEAR
libnecpp-dev (1.5.0+cvs20101003-2.1build1) [universe]
development files for libnecpp
libnecpp0 (1.5.0+cvs20101003-2.1build1) [universe]
library to use NEC2++
libocas-tools (0.93-1) [universe]
Standalone applications implementing the OCAS solver
libqgis1.7.5 (1.7.4+1.7.5~20120320-1.1) [universe]
Quantum GIS - shared libraries
libroot-graf2d-postscript5.34 (5.34.00-1ubuntu1) [universe]
Postscript/PDF renderer library for ROOT
libroot-proof-proofplayer5.34 (5.34.00-1ubuntu1) [universe]
PROOF plugin for ROOT
libroot-proof5.34 (5.34.00-1ubuntu1) [universe]
PROOF library for ROOT
librsl1 (1.42-2) [universe]
TRMM Radar Software Library
libsilo-bin (4.8-13) [universe]
Utilities to manipulate libsilo files
libsquizz (0.99a-2) [universe]
Conversion libs used by squizz genetic sequence converter
libstxxl1 (1.3.1-4) [universe]
C++ STL drop-in replacement for extremely large datasets
libworldwind-java (0.5.0-10) [multiverse]
3D Virtual Globe
libxy-bin (0.8-1) [universe]
xylib - utilities
liggghts (1.5.3-1) [universe]
Open Source DEM Particle Simulation Software.
logcentral (2.7-1) [universe]
Logging service for distributed applications
logcentral-tools (2.7-1) [universe]
Logging service for distributed applications
logol (1.5.0-6) [universe]
Pattern matching tool using Logol language
logol-bin (1.5.0-6) [universe]
Pattern matching tool using Logol language
loki (2.4.7.4-4) [universe]
MCMC linkage analysis on general pedigrees
loki-doc (2.4.7.4-4) [universe]
Postscript manual for loki
looptools (2.7-1) [universe]
Integral Evaluator of One-loop Feynman Diagram
lutefisk (1.0.5a.cleaned-1) [universe]
de novo interpretation of peptide CID spectra
mafft (6.864-1) [universe]
Multiple alignment program for amino acid or nucleotide sequences
maq (0.7.1-5) [universe]
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-4) [universe]
graphical read alignment viewer for short gene sequences
massxpert (3.2.3-1) [universe]
linear polymer mass spectrometry software
massxpert-data (3.2.3-1) [universe]
linear polymer mass spectrometry software - arch-indep data
matlab-gdf (0.1.2-2) [multiverse]
IO library for the GDF -- Matlab interface
maude (2.6-2) [universe]
high-performance logical framework
mayavi2 (4.1.0-1) [universe]
scientific visualization package for 2-D and 3-D data
mbt (3.2.8-1) [universe]
memory-based tagger-generator and tagger
mbtserver (0.5-2) [universe]
Server extensions for the MBT tagger
meep (1.1.1-8ubuntu1) [universe]
software package for FDTD simulation
meep-lam4 (1.1.1-9) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpi-default (1.1.1-9) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpich2 (1.1.1-9) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.1.1-8build1) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
melting (4.3c-2) [universe]
compute the melting temperature of nucleic acid duplex
melting-gui (4.3c-2) [universe]
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.18.1-3) [universe]
map editor for OpenStreetMap.org
mgltools-bhtree (1.5.6~rc3~cvs.20120206-1) [multiverse]
Bhtree library extension module
mgltools-cadd (1.5.6~rc3~cvs.20120206-1) [multiverse]
Computer Aided Drug Discovery (CADD) Pipeline
mgltools-dejavu (1.5.6~rc3~cvs.20120206-1) [multiverse]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.6~rc3~cvs.20120601-1) [multiverse]
Python library for geometric analyses
mgltools-mglutil (1.5.6~rc3~cvs.20120206-1) [multiverse]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.6~rc3~cvs.20120206-1) [multiverse]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.6~rc3~cvs.20120206-1) [multiverse]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.6~rc3~cvs.20120601-1ubuntu1) [multiverse]
Opengltk Python extension
mgltools-pmv (1.5.6~rc2+cvs.20110926-1ubuntu1) [multiverse]
Python-based Molecular Viewer
mgltools-pmv-test (1.5.6~rc2+cvs.20110926-1ubuntu1) [multiverse]
Python-based Molecular Viewer (functionality tests)
mgltools-pyautodock (1.5.6~rc3~cvs.20120206-1) [multiverse]
Python implementation of autodock
mgltools-pybabel (1.5.6~rc3~cvs.20120206-1) [multiverse]
molecular structure file access and interpretation
mgltools-pyglf (1.5.6~rc3~cvs.20120601-1) [multiverse]
GLF library Python extension to write text in OpenGL
mgltools-scenario2 (1.5.6~rc3~cvs.20120206-1) [multiverse]
Python-based viewer of molecular structures
mgltools-sff (1.5.6~rc3~cvs.20120601-1) [multiverse]
Simple Force Field for Python
mgltools-support (1.5.6~rc3~cvs.20120206-1) [multiverse]
Update mechanism of MGLTools
mgltools-symserv (1.5.6~rc3~cvs.20120206-1) [multiverse]
Symetry server
mgltools-utpackages (1.5.6~rc3~cvs.20120601-1) [multiverse]
UT Austin software Python extensions
mgltools-viewerframework (1.5.6~rc3~cvs.20120206-2) [multiverse]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.6~rc3~cvs.20120601-1) [multiverse]
Python-based Visual Programming Environment
mgltools-visionlibraries (1.5.6~rc3~cvs.20120601-1) [multiverse]
Extensions for Python-based Visual Programming Environment
mgltools-volume (1.5.6~rc3~cvs.20120206-1) [multiverse]
Volume rendering Python package
mgltools-webservices (1.5.6~rc3~cvs.20120206-1) [multiverse]
webservices for components of autodocktools
minc-tools (2.1.10-1) [universe]
MNI medical image format tools
minisat (1:2.2.1-3) [universe]
Fast and lightweight SAT solver
minisat+ (1.0-2) [universe]
solver for pseudo-Boolean constraints
minisat2 (1:2.2.1-3) [universe]
Transitional package for minisat
minisat2
本虚包由这些包填实: minisat
mipe (1.1-4) [universe]
Tools to store PCR-derived data
mira-assembler (3.4.0.1-3build1) [universe]
Whole Genome Shotgun and EST Sequence Assembler
mira-examples (3.4.0.1-3build1) [universe]
files to experiment with the mira assembler
mitools (1.8.5-2ubuntu1) [universe]
view, convert and perform basic maths with medical image datasets
mlv-smile (1.47-3) [universe]
Find statistically significant patterns in sequences
mmass (5.2.0-1) [universe]
Mass spectrometry tool for proteomics
mmass-modules (5.2.0-1) [universe]
Mass spectrometry tool for proteomics - extension modules
mobyle (1.0.6~dfsg-1) [universe]
Web portal that provides web forms for command-line software
mobyle-programs (4.0-1) [universe]
Program descriptions for the mobyle portal
mobyle-utils (1.0.6~dfsg-1) [universe]
binary tools used by Mobyle
montecarlo-base (20061220+dfsg3-1build1) [universe]
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-1build1) [universe]
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-5) [universe]
Semi-empirical Quantum Chemistry Library (binaries)
morse-simulator (0.6~alpha-1~exp1) [universe]
Multi-OpenRobot Simulation Engine
morse-simulator-data (0.6~alpha-1~exp1) [universe]
Multi-OpenRobot Simulation Engine
mothur (1.24.1-1) [universe]
sequence analysis suite for research on microbiota
mpb (1.4.2-18) [universe]
MIT Photonic-Bands
mpb-mpi (1.4.2-18) [universe]
MIT Photonic-Bands, parallel (mpich) version
mpqc (2.3.1-14) [universe]
Massively Parallel Quantum Chemistry Program
mpqc-openmpi (2.3.1-14) [universe]
Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)
mpqc-support (2.3.1-14) [universe]
Massively Parallel Quantum Chemistry Program (support tools)
mrbayes-mpi (3.2.1+dfsg-2) [universe]
Bayesian Inference of Phylogeny - mpi version
mriconvert (2.0.235-1) [universe]
medical image file conversion utility
mricron (0.20120505.1~dfsg.1-1) [universe]
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20120505.1~dfsg.1-1) [universe]
data files for MRIcron
mrpt-apps (1:0.9.6-1) [universe]
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-libs (1:0.9.6-1) [universe]
Mobile Robot Programming Toolkit - All the libraries
mrtrix (0.2.10-2) [universe]
diffusion-weighted MRI white matter tractography
mssstest (3.0-3) [multiverse]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.23~dfsg-2) [universe]
Efficient sequence alignment of full genomes
muscle (1:3.8.31-1) [universe]
Multiple alignment program of protein sequences
music-bin (1.0.7-1.2) [universe]
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.1-3) [universe]
multiple structural alignment of proteins
mustang-testdata (3.2.1-3) [universe]
multiple structural alignment of proteins, test data
nautic (1.3-6) [universe]
computation of observer position in astro-navigation
ncbi-blast+ (2.2.26-3) [universe]
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.2.26-3) [universe]
NCBI Blast legacy call script
ncbi-epcr (2.3.12-1-1) [universe]
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20120620-2) [universe]
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-tools-bin (6.1.20120620-2) [universe]
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20120620-2) [universe]
NCBI libraries for biology applications (X-based utilities)
ncoils (2002-3) [universe]
coiled coil secondary structure prediction
ncview (1.93g-1build2) [universe]
A X11 visual browser for NetCDF format files
necpp (1.5.0+cvs20101003-2.1build1) [universe]
NEC2 Evolution Antenna Modelling System
neobio (0.0.20030929-1ubuntu1) [universe]
pairwise sequence alignments
netcdf-bin (1:4.1.3-6) [universe]
Programs for reading and writing NetCDF files
nexus-tools (4.2.1-svn1614-1build1) [universe]
NeXus scientific data file format - applications
njplot (2.4-1) [universe]
phylogenetic tree drawing program
node-sphericalmercator (1.0.1-2) [universe]
Spherical Mercator projection support for NodeJS
node-srs (0.2.12+ds1-1) [universe]
spatial reference library for NodeJS
numdiff (5.6.0-1) [universe]
Compare similar files with numeric fields.
nwchem (6.1-3) [universe]
High-performance computational chemistry software
nwchem-data (6.1-3) [universe]
High-performance computational chemistry software (data files)
oar-admin (2.5.2-3) [universe]
OAR batch scheduler administration tools package
oar-api (2.5.2-3) [universe]
transitional dummy package
oar-common (2.5.2-3) [universe]
OAR batch scheduler common package
oar-node (2.5.2-3) [universe]
OAR batch scheduler node package
oar-restful-api (2.5.2-3) [universe]
OAR RESTful API
oar-server (2.5.2-3) [universe]
OAR batch scheduler server package
oar-server-mysql (2.5.2-3) [universe]
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.2-3) [universe]
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.2-3) [universe]
OAR batch scheduler user package
oar-user-mysql (2.5.2-3) [universe]
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.2-3) [universe]
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.2-3) [universe]
OAR batch scheduler visualization tool package
oasis3 (3.3.beta.dfsg.1-8) [universe]
Coupler for exchanging fields between components of Earth system models
oasis3-examples (3.3.beta.dfsg.1-8) [universe]
Example models for the OASIS climate model coupler
obdgpslogger (0.16-1.2) [universe]
suite of tools to log OBDII and GPS data
objcryst-fox (1.9.6.0-2) [universe]
Free Objects for Xtallography
oce-draw (0.9.1-3) [universe]
OpenCASCADE Community Edition CAE platform shared library
octave-biosig (1.3.0-2) [universe]
Octave bindings for BioSig library
octave-gdf (0.1.2-2) [universe]
IO library for the GDF -- Octave interface
octave-lhapdf (5.8.7+repack-1) [universe]
Octave Bindings for LHAPDF
octave-psychtoolbox-3 (3.0.9+svn2579.dfsg1-1build1) [universe]
toolbox for vision research -- Octave bindings
odin (1.8.5-2ubuntu1) [universe]
develop, simulate and run magnetic resonance sequences
ogdi-bin (3.2.0~beta2-7build1) [universe]
Open Geographic Datastore Interface Library -- utilities
openbabel (2.3.1+dfsg-4) [universe]
Chemical toolbox utilities (cli)
openbabel-gui (2.3.1+dfsg-4) [universe]
Chemical toolbox utilities (graphical user interface)
opencascade-draw (6.5.0.dfsg-2build1) [universe]
OpenCASCADE CAE platform shared library
openmx (3.5-1) [universe]
Package for nano-scale material simulations
openrocket (12.03-1ubuntu1) [universe]
Model Rocket Simulator
openturns-examples (1.0-4) [universe]
examples of OpenTURNS functionalities
openturns-validation (1.0-4) [universe]
validation files for OpenTURNS
openuniverse (1.0beta3.1+dfsg-3) [universe]
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-3) [universe]
3D Universe Simulator data files
openwalnut-modules (1.2.5-1.1build1) [universe]
Multi-modal medical and brain data visualization tool.
openwalnut-qt4 (1.2.5-1.1build1) [universe]
Multi-modal medical and brain data visualization tool.
opj2dat (20080225-2.1) [universe]
OriginLab Origin project files to data files converter
optgeo (2.11-4) [universe]
simulator for geometrical optics
opticalraytracer (3.2-1ubuntu1) [universe]
Virtual lens design workshop
origami (0.7.4-1) [universe]
command-line management tool for Folding @ Home clients
ossim-core (1.7.21-4) [universe]
The OSSIM core utilities
otf-trace (1.10.2+dfsg-2ubuntu1) [universe]
Open Trace Format support library - development files
ovito (0.9.5-2) [universe]
visualization and analysis tool for atomistic simulation data
paje.app (1.98-1) [universe]
generic visualization tool (Gantt chart and more)
paml (4.5-1) [multiverse]
Phylogenetic Analysis by Maximum Likelihood (PAML)
paraview (3.14.1-6build1) [universe]
Parallel Visualization Application
paw (1:2.14.04.dfsg.2-8) [universe]
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-8) [universe]
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-8) [universe]
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-8) [universe]
Physics Analysis Workstation examples and tests
pdb2pqr (1.8-1) [universe]
Preparation of protein structures for electrostatics calculations
pegasus-wms (4.0.1+dfsg-8) [universe]
Scientific workflow management system for Condor
perlprimer (1.1.21-1) [universe]
Graphical design of primers for PCR
perlprimer-doc (1.1.21-1) [universe]
Tutorial to perlprimer
phy-spread (1.0.3-1ubuntu1) [multiverse]
analyze and visualize phylogeographic reconstructions
phylip (1:3.69-1) [multiverse]
package of programs for inferring phylogenies
phylip-doc (1:3.69-1) [multiverse]
package of programs for inferring phylogenies
phyml (2:20110919-1) [universe]
Phylogenetic estimation using Maximum Likelihood
picard-tools (1.46-1ubuntu1) [universe]
Command line tools to manipulate SAM and BAM files
picosat (936-4) [universe]
SAT solver with proof and core support
planets (0.1.13-13build1) [universe]
Gravitation simulation of planetary bodies
plastimatch (1.5.11+dfsg0-1ubuntu1) [universe]
medical image reconstruction and registration
plink (1.07-3) [universe]
whole-genome association analysis toolset
poa (2.0+20060928-3) [universe]
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106-2.1) [universe]
population genetic software
pp-popularity-contest (1.0.5-1) [universe]
PredictProtein popularity contest
praat (5.3.16-1) [universe]
program for speech analysis and synthesis
primer3 (2.3.2-1) [universe]
Tool to design flanking oligo nucleotides for DNA amplification
probalign (1.4-2) [universe]
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-9) [universe]
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-9) [universe]
Extra programs from the probcons package
proda (1.0-8) [universe]
multiple alignment of protein sequences
profnet-bval (1.0.21-1) [universe]
neural network architecture for profbval
profnet-chop (1.0.21-1) [universe]
neural network architecture for profchop
profnet-con (1.0.21-1) [universe]
neural network architecture for profcon
profnet-isis (1.0.21-1) [universe]
neural network architecture for profisis
profnet-md (1.0.21-1) [universe]
neural network architecture for metadisorder
profnet-norsnet (1.0.21-1) [universe]
neural network architecture for norsnet
profnet-prof (1.0.21-1) [universe]
neural network architecture for profacc
profnet-snapfun (1.0.21-1) [universe]
neural network architecture for snapfun
profphd (1.0.38-1) [universe]
secondary structure and solvent accessibility predictor
profphd-net (1.0.21-1) [universe]
neural network architecture for profphd
profphd-utils (1.0.9-1) [universe]
profphd helper utilities convert_seq and filter_hssp
proftmb (1.1.10-1) [universe]
per-residue prediction of bacterial transmembrane beta barrels
proj-bin (4.7.0-2) [universe]
Cartographic projection library (tools)
psi3 (3.4.0-3) [universe]
Quantum Chemical Program Suite
psychopy (1.73.06.dfsg-1) [universe]
environment for creating psychology stimuli in Python
psychtoolbox-3-common (3.0.9+svn2579.dfsg1-1build1) [universe]
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (3.0.9+svn2579.dfsg1-1build1) [universe]
toolbox for vision research -- arch-specific parts
pyfai (0.3.5-1) [universe]
python library for Fast Azimuthal Integration
pyformex (0.8.6-4ubuntu2) [universe]
program to create 3D geometry from Python scripts.
pyformex-lib (0.8.6-4ubuntu2) [universe]
program to create 3D geometry from Python scripts.
pymca (4.6.0-2) [universe]
Python applications and toolkit for X-ray fluorescence analysis
pymca-data (4.6.0-2) [universe]
Architecture independent data files for PyMca
pymol (1.5.0.1-2build1) [universe]
Molecular Graphics System
pythia8-data (8.1.65-1) [universe]
PYTHIA8 data files
python-ifeffit (2:1.2.11d-8) [multiverse]
Python GUI interface and extensions for IFEFFIT
python-necpp (1.5.0+cvs20101003-2.1build1) [universe]
Python module for using NEC2++
python-nifti (0.20100607.1-4) [universe]
Python interface to the NIfTI I/O libraries
python-pyepl (1.1.0-3build3) [universe]
module for coding psychology experiments in Python
python-pyepl-common (1.1.0-3build3) [universe]
module for coding psychology experiments in Python
python-pyode (1.2.0-4+cvs20090320build2) [universe]
Python bindings for The Open Dynamics Engine
python-saga (2.0.8+dfsg-3) [universe]
SAGA GIS python bindings
qfits-tools (6.2.0-5) [universe]
FITS manipulation tools
qgis (1.7.4+1.7.5~20120320-1.1) [universe]
Geographic Information System (GIS)
qgis-api-doc (1.7.4+1.7.5~20120320-1.1) [universe]
Quantum GIS API documentation
qgis-common (1.7.4+1.7.5~20120320-1.1) [universe]
Quantum GIS - architecture-independent data
qgis-mapserver (1.7.4+1.7.5~20120320-1.1) [universe]
Quantum GIS mapserver
qgis-plugin-grass (1.7.4+1.7.5~20120320-1.1) [universe]
GRASS plugin for Quantum GIS
qgis-plugin-grass-common (1.7.4+1.7.5~20120320-1.1) [universe]
GRASS plugin for Quantum GIS - architecture-independent data
qgis-providers (1.7.4+1.7.5~20120320-1.1) [universe]
collection of data providers to Quantum GIS
qgis-providers-common (1.7.4+1.7.5~20120320-1.1) [universe]
collection of data providers to Quantum GIS - architecture-independent files
qgis-sqlanywhere1.7.5 (1.7.4+1.7.5~20120320-1.1) [universe]
Quantum GIS sql anywhere plugin and provider
qiime (1.5.0-1) [universe]
Quantitative Insights Into Microbial Ecology
qmc (0.94-3build2) [universe]
Quine McClusky Simplification Tool
qthid-fcd-controller (3.1-6) [universe]
Funcube Dongle controller
quantum-espresso (5.0-1) [universe]
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
quantum-espresso-data (5.0-1) [universe]
Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
qutemol (0.4.1~cvs20081111-2build1) [universe]
interactive visualization of macromolecules
r-cran-colorspace (1.0.1-1build1) [universe]
GNU R Color Space Manipulation
r-cran-epibasix (1.1-3) [universe]
GNU R Elementary Epidemiological Functions
r-cran-genetics (1.3.6-2) [universe]
GNU R package for population genetics
r-cran-haplo.stats (1.5.5-1) [universe]
GNU R package for haplotype analysis
r-cran-maptools (1:0.7-38-1) [multiverse]
GNU R Tools for reading and handling spatial objects
r-cran-msm (1.1-1) [universe]
GNU R Multi-state Markov and hidden Markov models in continuous time
r-cran-qvalue (1.26.0-1) [universe]
GNU R package for Q-value estimation for FDR control
r-cran-qvalue
本虚包由这些包填实: r-bioc-qvalue
r-cran-randomforest (4.6-6-1) [universe]
GNU R package implementing the random forest classificator
r-cran-sp (1:0.9-81-1) [universe]
GNU R classes and methods for spatial data
r-cran-spc (1:0.4.1-1build1) [universe]
GNU R Statistical Process Control
r-cran-surveillance (1.2-1-4) [multiverse]
development and the evaluation of epidemiological outbreak detection algorithms
r-cran-vcd (1:1.2-12-1) [universe]
GNU R Visualizing Categorical Data
r-cran-xtable (1:1.5-6-1) [universe]
GNU R coerce data to LaTeX and HTML tables
r-other-bio3d (1.1-4-1) [universe]
GNU R package for biological structure analysis
raccoon (1.0-1) [multiverse]
preparation of in silico drug screening projects
rasmol (2.7.5.2-1ubuntu1) [universe]
Visualize biological macromolecules
rasmol-doc (2.7.5.2-1ubuntu1) [universe]
Documentation for rasmol
raster3d (3.0-2-4ubuntu1) [multiverse]
tools for generating images of proteins or other molecules
raxml (7.2.8-2) [universe]
Randomized Axelerated Maximum Likelihood of phylogenetic trees
rdkit-data (201203-2) [universe]
Collection of cheminformatics and machine-learning software (data files)
readseq (1-9) [universe]
Conversion between sequence formats
reprof (1.0.1-1) [universe]
protein secondary structure and accessibility predictor
rivet (1.8.0-1) [universe]
Robust Independent Validation of Experiment and Theory
rivet-plugins (1.8.0-1) [universe]
Analysis plugins of Rivet
rivet-plugins-data (1.8.0-1) [universe]
Data files of Rivet analysis plugins
rivet-plugins-dev (1.8.0-1) [universe]
Template generator of Rivet analysis plugin
rivet-root-converter (1.8.0-1) [universe]
Rivet and ROOT file format converter
rnahybrid (2.1.1-1) [universe]
Fast and effective prediction of microRNA/target duplexes
robot-player (3.0.2+dfsg-4ubuntu2) [universe]
Networked server for robots and sensors
robot-player-dev (3.0.2+dfsg-4ubuntu2) [universe]
Networked server for robots and sensors - development package
robot-player-doc (3.0.2+dfsg-4ubuntu2) [universe]
Networked server for robots and sensors (documentation)
rocs (4:4.9.2-0ubuntu1) [universe]
graph theory IDE
root-plugin-geom-gdml (5.34.00-1ubuntu1) [universe]
GDML import/export module for ROOT geometries
root-plugin-geom-geombuilder (5.34.00-1ubuntu1) [universe]
Geometry builder plugin for ROOT
root-plugin-geom-geompainter (5.34.00-1ubuntu1) [universe]
Geometry painter plugin for ROOT
root-plugin-graf2d-asimage (5.34.00-1ubuntu1) [universe]
AfterImage plugin for ROOT
root-plugin-graf2d-qt (5.34.00-1ubuntu1) [universe]
Graf2d Qt plugin for ROOT
root-plugin-graf2d-x11 (5.34.00-1ubuntu1) [universe]
X window system plugin for ROOT
root-plugin-graf3d-x3d (5.34.00-1ubuntu1) [universe]
X 3D plugin for ROOT
root-plugin-gui-fitpanel (5.34.00-1ubuntu1) [universe]
GUI element for fits plugin for ROOT
root-plugin-gui-guibuilder (5.34.00-1ubuntu1) [universe]
GUI editor plug-in for ROOT
root-plugin-gui-qt (5.34.00-1ubuntu1) [universe]
Qt plugin for ROOT
root-plugin-gui-sessionviewer (5.34.00-1ubuntu1) [universe]
GUI to browse an interactive PROOF session
root-plugin-hist-hbook (5.34.00-1ubuntu1) [universe]
Hbook plugin for ROOT
root-plugin-hist-histpainter (5.34.00-1ubuntu1) [universe]
Histogram painter plugin for ROOT
root-plugin-hist-spectrumpainter (5.34.00-1ubuntu1) [universe]
Spectrum painter plugin for ROOT
root-plugin-io-sql (5.34.00-1ubuntu1) [universe]
SQL plugin for ROOT
root-plugin-io-xml (5.34.00-1ubuntu1) [universe]
XML reader plugin for ROOT
root-plugin-math-fftw3 (5.34.00-1ubuntu1) [universe]
FFTw plugin for ROOT
root-plugin-math-fumili (5.34.00-1ubuntu1) [universe]
Fumili plugin for ROOT
root-plugin-math-minuit2 (5.34.00-1ubuntu1) [universe]
Minuit version 2 plugin for ROOT
root-plugin-montecarlo-pythia8 (5.34.00-1ubuntu1) [universe]
Pythia version 8 plugin for ROOT
root-plugin-net-globus (5.34.00-1ubuntu1) [universe]
Globus plugin for ROOT
root-plugin-net-krb5 (5.34.00-1ubuntu1) [universe]
Kerberos (version 5) plugin for ROOT
root-plugin-proof-peac (5.34.00-1ubuntu1) [universe]
PEAC plugin for ROOT - run-time libraries
root-plugin-sql-mysql (5.34.00-1ubuntu1) [universe]
MySQL client plugin for ROOT
root-plugin-sql-odbc (5.34.00-1ubuntu1) [universe]
ODBC plugin for ROOT
root-plugin-sql-pgsql (5.34.00-1ubuntu1) [universe]
PostgreSQL client plugin for ROOT
root-plugin-tree-treeviewer (5.34.00-1ubuntu1) [universe]
GUI to browse a ROOT tree
root-system (5.34.00-1ubuntu1) [universe]
metapackage to install all ROOT packages
root-system-bin (5.34.00-1ubuntu1) [universe]
Numerical data analysis framework - general applications
root-system-common (5.34.00-1ubuntu1) [universe]
Common files for ROOT
root-system-proofd (5.34.00-1ubuntu1) [universe]
Parallel ROOt Facility - distributed, parallel computing
root-system-rootd (5.34.00-1ubuntu1) [universe]
ROOT remote file server
saga (2.0.8+dfsg-3) [universe]
System for Automated Geoscientific Analyses
saint (2.3.3-1ubuntu1) [universe]
Significance Analysis of INTeractome
samtools (0.1.18-1ubuntu2) [universe]
processing sequence alignments in SAM and BAM formats
saods9 (7.0.1+dfsg-1) [universe]
Image display tool for astronomy
saods9-blt (7.0.1+dfsg-1) [universe]
BLT subpackage for saods9
saods9-data (7.0.1+dfsg-1) [universe]
Image display tool for astronomy (shared data)
sat4j (2.3.1-1ubuntu1) [universe]
Efficient library of SAT solvers in Java
savi (1.4.5-4) [universe]
satellite constellation visualisation
sbmltoolbox (4.1.0-1) [universe]
libsbml toolbox for octave and matlab
science-bci (0.16ubuntu2) [universe]
Debian Science packages for the design and use of
science-dataacquisition-dev (0.16ubuntu2) [universe]
Debian Science data acquisition development packages
science-distributedcomputing (0.16ubuntu2) [universe]
Debian Science Distributed Computing packages
science-electrophysiology (0.16ubuntu2) [universe]
Debian Science packages for Electrophysiology
science-highenergy-physics (0.16ubuntu2) [universe]
Debian Science High Energy Physics packages
science-machine-learning (0.16ubuntu2) [universe]
Debian Science Machine Learning packages
science-nanoscale-physics (0.16ubuntu2) [universe]
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (0.16ubuntu2) [universe]
Debian Science Nanoscale Physics development packages
science-neuroscience-modeling (0.16ubuntu2) [universe]
Debian Science packages for modeling of neural systems
science-psychophysics (0.16ubuntu2) [universe]
Debian Science packages for Psychophysics
seaview (1:4.3.3-3) [multiverse]
Multiplatform interface for sequence alignment and phylogeny
seesat5 (0.90.10-1.1) [universe]
a satellite location program
seq-gen (1.3.3-1) [universe]
simulate the evolution of nucleotide or amino acid sequences
sextractor (2.8.6-3) [universe]
Source extractor for astronomical images
shelxle (1.0.564-1) [universe]
graphical user interface for SHELXL
shogun-cmdline-static (1.1.0-4ubuntu6) [universe]
Large Scale Machine Learning Toolbox
shogun-csharp-modular (1.1.0-4ubuntu6) [universe]
Large Scale Machine Learning Toolbox
shogun-dbg (1.1.0-4ubuntu6) [universe]
Large Scale Machine Learning Toolbox
shogun-elwms-static (1.1.0-4ubuntu6) [universe]
Large Scale Machine Learning Toolbox
shogun-java-modular (1.1.0-4ubuntu6) [universe]
Large Scale Machine Learning Toolbox
shogun-lua-modular (1.1.0-4ubuntu6) [universe]
Large Scale Machine Learning Toolbox
shogun-python-modular (1.1.0-4ubuntu6) [universe]
Large Scale Machine Learning Toolbox
shogun-python-static (1.1.0-4ubuntu6) [universe]
Large Scale Machine Learning Toolbox
shogun-r-static (1.1.0-4ubuntu6) [universe]
Large Scale Machine Learning Toolbox
shogun-ruby-modular (1.1.0-4ubuntu6) [universe]
Large Scale Machine Learning Toolbox
sibsim4 (0.20-1) [universe]
align expressed RNA sequences on a DNA template
sift (4.0.3b-3ubuntu1) [multiverse]
predicts if a substitution in a protein has a phenotypic effect
sigma-align (1.1.3-3) [universe]
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.5.1+svn556-1ubuntu2) [universe]
GUI viewer for biosignals such as EEG, EMG, and ECG
sim4 (0.0.20030921-3) [universe]
tool for aligning cDNA and genomic DNA
simgrid (3.7.1-1) [universe]
Toolkit for scalable simulation of distributed applications
sixpack (1:0.68-1ubuntu1) [multiverse]
full-featured package for XAS analysis
slang-xfig (0.2.0~.35-1.1) [universe]
produce plots and drawings through Xfig's fig2dev in S-Lang
spass (3.7-3) [universe]
An automated theorem prover for first-order logic with equality
spatialite-bin (3.0.0-2) [universe]
Geospatial extension for SQLite - tools
spd (1.3.0-1ubuntu1) [universe]
Synchrotron image corrections and azimuthal integration
squizz (0.99a-2) [universe]
Converter for genetic sequences and alignments
sra-toolkit (2.1.7a-1ubuntu2) [universe]
utilities for the NCBI Sequence Read Archive
sra-toolkit-libs-dev (2.1.7a-1ubuntu2) [universe]
Development files for the NCBI SRA Toolkit's libraries
sra-toolkit-libs0 (2.1.7a-1ubuntu2) [universe]
Libraries for the SRA Toolkit
ssake (3.8-2) [universe]
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.8-2) [universe]
example data for SSAKE, a genomic assembler of short reads
staden-io-lib-utils (1.12.4-1build1) [universe]
programs for maniuplating DNA sequencing files
stardata-common (0.8) [universe]
Common framework to manage astronomy packages
starplot (0.95.5-7) [universe]
3-dimensional perspective star map viewer
starpu-contrib-examples (1.0.1-3ubuntu1) [multiverse]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples (1.0.1-2) [universe]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples
本虚包由这些包填实: starpu-contrib-examples
stellarium (0.11.3-1) [universe]
real-time photo-realistic sky generator
stellarium-data (0.11.3-1) [universe]
Stellarium data files
stimfit (0.10.18-1.1) [universe]
A program for viewing and analyzing electrophysiological data
sumo (0.15.0~dfsg-3) [universe]
Simulation of Urban MObility (SUMO)
survex (1.2.6-4) [universe]
cave surveying and mapping software
survex-aven (1.2.6-4) [universe]
sophisticated cave survey viewer for Survex
survex-svxedit (1.2.6-4) [universe]
survey data editor for Survex
swe-basic-data (1.77.00.0005-2) [universe]
basic data files for the libswe package
swe-standard-data (00004-1) [universe]
standard data for the Swiss Ephemeris
syrthes (3.4.3-dfsg1-6) [universe]
Transient thermal simulations in complex solid geometries
t-coffee (9.02.r1228-2) [universe]
Multiple Sequence Alignment
t-coffee-doc (9.02.r1228-2) [universe]
PDF and HTML accompaning documents to T-Coffee
t-coffee-examples (9.02.r1228-2) [universe]
annotated examples for the use of T-Coffee
tabix (0.2.6-1) [universe]
generic indexer for TAB-delimited genome position files
tcd-utils (20061127-2) [universe]
convert Tide Constituent Database (TCD) files
terraintool (1.12a-1) [universe]
Generates survex format terrain models from SRTM and ASTER data
tessa (0.3.1-6) [universe]
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-6) [universe]
simulation of 3D optical systems using FDTD on MPI clusters
thepeg (1.8.0-1) [universe]
Toolkit for High Energy Physics Event Generation
thepeg-gui (1.8.0-1) [universe]
Java GUI of ThePEG
thepeg-reference (1.8.0-1) [universe]
Code reference of ThePEG
therion (5.3.9-4) [universe]
Cave surveying - 2D and 3D drawing software
therion-doc (5.3.9-4) [universe]
Documentation for Therion Cave surveying software
therion-viewer (5.3.9-4) [universe]
Cave surveying - 3D viewer for therion models
theseus (1.6.2-2) [universe]
superimpose macromolecules using maximum likelihood
tigr-glimmer (3.02-2build1) [universe]
Gene detection in archea and bacteria
timbl (6.4.2-1) [universe]
Tilburg Memory Based Learner
timblserver (1.4-2) [universe]
Server extensions for Timbl
tm-align (20120507-1) [universe]
structual alignment of proteins
tophat (2.0.3-1) [universe]
fast splice junction mapper for RNA-Seq reads
transcalc (0.14-5) [universe]
microwave and RF transmission line calculator
transtermhp (2.09-1) [universe]
find rho-independent transcription terminators in bacterial genomes
tree-ppuzzle (5.2-7) [universe]
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-7) [universe]
Reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle-doc (5.2-7) [universe]
Reconstruction of phylogenetic trees by maximum likelihood
treeviewx (0.5.1+20100823-1) [universe]
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [multiverse]
High-quality 2-D mesh generator binary programs
tunnelx (20110801-5) [universe]
Cave Survey drawing software
twms (0.03e-2) [universe]
tiny web map service
ucto (0.5.2-2) [universe]
Unicode Tokenizer
ugene (1.9.8+repack-0ubuntu4) [universe]
integrated bioinformatics toolkit
ugene-data (1.9.8+repack-0ubuntu4) [universe]
required data for UGENE - integrated bioinformatics toolkit
uhd-host (3.4.2-1) [universe]
universal hardware driver for Ettus Research products
units-filter (3.5-2) [universe]
Parser for expressions concerning physical values
v-sim (3.6.0-2build3) [universe]
Visualize atomic structures
v-sim-common (3.6.0-2build3) [universe]
Visualize atomic structures (support files)
v-sim-plugins (3.6.0-2build3) [universe]
Plugins for V_Sim (a 3D visualization package)
vcftools (0.1.9-1) [universe]
designed for working with VCF files
velvet (1.2.03~nozlibcopy-1) [universe]
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.03~nozlibcopy-1) [universe]
Example data for the Velvet sequence assembler
veusz (1.15-1) [universe]
2D scientific plotting application with graphical interface
veusz-helpers (1.15-1) [universe]
Architecture-specific helper module for Veusz
viewmol (2.4.1-18) [universe]
A graphical front end for computational chemistry programs.
vistrails (2.0.alpha~1-3) [universe]
Science visualisation workflow toolkit
vmtk (1.0.1-1ubuntu2) [multiverse]
the Vascular Modeling Toolkit
volview (3.4-3build1) [universe]
Advanced volume visualization tool
vowpal-wabbit (6.1-1) [universe]
fast and scalable online machine learning algorithm
voxbo (1.8.5~svn1246-1ubuntu1) [universe]
processing, statistical analysis, and display of brain imaging data
wcslib-tools (4.13.4-1) [universe]
Command line tools utilizing wcslib
wcstools (3.8.5-1) [universe]
Handle the WCS of a FITS image
weka (3.6.6-1) [universe]
Machine learning algorithms for data mining tasks
wise (2.4.1-10) [universe]
comparison of biopolymers, commonly DNA and protein sequences
worldwind (0.5.0-10) [multiverse]
3D Virtual Globe
xbs (0-8) [universe]
3-d models and movies of molecules
xcrysden (1.5.53-1) [universe]
Crystalline and Molecular Structure Visualizer
xcrysden-data (1.5.53-1) [universe]
Crystalline and Molecular Structure Visualizer (Data Files)
xdrawchem (2.0-2) [universe]
Chemical structures and reactions editor
xflr5 (6.07+svn513-1) [universe]
analysis tool for airfoils
xfoil (6.97.dfsg-3build1) [universe]
program for the design and analysis of subsonic airfoils
xmakemol (5.16-5ubuntu1) [universe]
A program for visualizing atomic and molecular systems
xmds (1.6.6-7) [universe]
eXtensible Multi-Dimensional Simulator
xpa-tools (2.1.14-2) [universe]
Tools for seamless communication between Unix programs
xplot (1.19-9build1) [universe]
simple on-screen x-y column data plotter
xplot-xplot.org (0.90.7.1-2) [universe]
fast tool to graph and visualize lots of data
xppaut (6.11b+1.dfsg-1) [universe]
Phase Plane Plus Auto: Solves many kinds of equations
xtide (2.11-1) [universe]
provides tide and current predictions
xtide-coastline (20020202-1) [universe]
coastline data for xtide
xtide-data (20100529-1) [universe]
Harmonics data for xtide
xtide-data-nonfree (20100529-1) [multiverse]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xyscan (3.31-3) [universe]
data thief for scientists
yade (0.80.1-2) [universe]
Platform for discrete element modeling
ygraph (0.16~cvs20090218-1.1) [universe]
plot and animate data sets
yorick-av (0.0.1-2ubuntu1) [universe]
write movies from Yorick in various formats
yorick-full (2.2.02+dfsg-6) [universe]
full installation of the Yorick interpreter and add-ons
yorick-gyoto (0.0.3-5ubuntu2) [universe]
General relativistic geodesic integration for the Yorick language
yorick-mira (0.9.10+dfsg-1) [universe]
optical interferometry image reconstruction within Yorick
yorick-mpeg (0.1-2) [universe]
MPEG output support for the Yorick language
yorick-mpy-common (2.2.02+dfsg-6) [universe]
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.02+dfsg-6) [universe]
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.02+dfsg-6) [universe]
Message Passing Yorick (OpenMPI build)
yorick-svipc (0.14-2) [universe]
interprocess communication (shared memory...) for Yorick
z88 (13.0.0+dfsg2-3) [universe]
Finite Element Analysis Program - runtime
zimpl (3.2.0+dfsg-2) [universe]
mathematical modeling language for optimization problems
ztex-bmp (20120314-2) [universe]
universal macro processor
zygrib (3.9.2-1) [universe]
Weather data visualization, GRIB file viewer
zygrib-maps (3.9.2-1) [universe]
Maps for zyGrib weather visualization