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[ Source: bioperl-run  ]

Package: bioperl-run (1.6.9-3) [universe]

Links for bioperl-run


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Download Source Package bioperl-run:


Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Charles Plessy
  • Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Similar packages:

BioPerl wrappers: scripts

Other Packages Related to bioperl-run

  • depends
  • recommends
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  • dep: libbio-perl-run-perl (= 1.6.9-3)
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  • dep: perl
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  • rec: amap-align
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  • rec: bedtools
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  • rec: blast2
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  • rec: bowtie
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  • rec: bwa
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  • rec: clustalw
    global multiple nucleotide or peptide sequence alignment
  • rec: emboss
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  • rec: exonerate
    generic tool for pairwise sequence comparison
  • rec: hmmer
    profile hidden Markov models for protein sequence analysis
  • rec: infernal
    inference of RNA secondary structural alignments
  • rec: kalign
    Global and progressive multiple sequence alignment
  • rec: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • rec: maq
    maps short fixed-length polymorphic DNA sequence reads to reference sequences
  • rec: muscle
    Multiple alignment program of protein sequences
  • rec: phyml
    Phylogenetic estimation using Maximum Likelihood
  • rec: primer3
    Tool to design flanking oligo nucleotides for DNA amplification
  • rec: probalign
    multiple sequence alignment using partition function posterior probabilities
  • rec: probcons
    PROBabilistic CONSistency-based multiple sequence alignment
  • rec: samtools
    processing sequence alignments in SAM and BAM formats
  • rec: sim4
    tool for aligning cDNA and genomic DNA
  • rec: t-coffee
    Multiple Sequence Alignment
  • rec: tigr-glimmer
    Gene detection in archea and bacteria
  • rec: wise
    comparison of biopolymers, like DNA and protein sequences
  • sug: gmap
    spliced and SNP-tolerant alignment for mRNA and short reads
  • sug: paml
    Phylogenetic Analysis by Maximum Likelihood (PAML)
  • sug: phylip
    package of programs for inferring phylogenies

Download bioperl-run

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Architecture Package Size Installed Size Files
all 39.1 kB115.0 kB [list of files]