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パッケージ: r-bioc-genomicfeatures (1.30.0+dfsg-1) [universe]

r-bioc-genomicfeatures に関するリンク


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Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

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GNU R tools for making and manipulating transcript centric annotations

その他の r-bioc-genomicfeatures 関連パッケージ

  • 依存
  • 推奨
  • 提案
  • enhances
  • dep: r-api-3.4
    以下のパッケージによって提供される仮想パッケージです: r-base-core
  • dep: r-base-core (>= 3.4.2-1ubuntu4)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-annotationdbi (>= 1.33.15)
    GNU R Annotation Database Interface for BioConductor
  • dep: r-bioc-biobase (>= 2.15.1)
    base functions for Bioconductor
  • dep: r-bioc-biocgenerics (>= 0.1.0)
    generic functions for Bioconductor
  • dep: r-bioc-biomart (>= 2.17.1)
    GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
  • dep: r-bioc-biostrings (>= 2.23.3)
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomeinfodb (>= 1.13.1)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicranges (>= 1.29.14)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges (>= 2.11.16)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-rtracklayer (>= 1.29.24)
    GNU R interface to genome browsers and their annotation tracks
  • dep: r-bioc-s4vectors (>= 0.9.47)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-xvector
    BioConductor representation and manpulation of external sequences
  • dep: r-cran-dbi
    GNU R package providing a generic database interface
  • dep: r-cran-rcurl
    GNU R General network (HTTP/FTP/...) client interface
  • dep: r-cran-rmysql
    GNU R package providing a DBI-compliant interface to MySQL
  • dep: r-cran-rsqlite (>= 2.0)
    Database Interface R driver for SQLite
  • sug: r-bioc-bsgenome
    BioConductor infrastructure for Biostrings-based genome data packages
  • sug: r-bioc-ensembldb
    GNU R utilities to create and use an Ensembl based annotation database
  • sug: r-bioc-genomicalignments
    BioConductor representation and manipulation of short genomic alignments
  • sug: r-bioc-rsamtools
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • sug: r-cran-knitr
    GNU R package for dynamic report generation using Literate Programming
  • sug: r-cran-runit
    GNU R package providing unit testing framework

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