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[ Source: r-bioc-variantannotation  ]

Links for r-bioc-variantannotation

Ubuntu Resources:

• Bug Reports
• Ubuntu Changelog
• Copyright File

Download Source Package r-bioc-variantannotation:

• [r-bioc-variantannotation_1.40.0-1.dsc]
• [r-bioc-variantannotation_1.40.0.orig.tar.gz]
• [r-bioc-variantannotation_1.40.0-1.debian.tar.xz]

Maintainer:

• Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

• Debian R Packages Maintainers
• Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

External Resources:

• Homepage [bioconductor.org]

Similar packages:

• snpeff
• r-bioc-annotate
• r-bioc-singler
• r-bioc-structuralvariantannotation
• tvc
• vt
• vt-examples
• r-bioc-annotationfilter
• r-bioc-annotationdbi
• scrm
• libsnpsift-java

Other Packages Related to r-bioc-variantannotation

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• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries

• dep: libcurl4 (>= 7.18.0)

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.14

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 4.1.2-1ubuntu1)

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• dep: r-bioc-annotationdbi (>= 1.27.9)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.37.0)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.57.2)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome (>= 1.47.3)

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• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicfeatures (>= 1.31.3)

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• dep: r-bioc-genomicranges (>= 1.41.5)

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• dep: r-bioc-iranges (>= 2.23.9)

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• dep: r-bioc-matrixgenerics

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• dep: r-bioc-rhtslib

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-rsamtools (>= 1.99.0)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-rtracklayer (>= 1.39.7)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.27.12)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.19.5)

  BioConductor assay container

• dep: r-bioc-xvector (>= 0.29.2)

  BioConductor representation and manpulation of external sequences

• dep: r-bioc-zlibbioc

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• sug: r-bioc-annotationhub

  GNU R client to access AnnotationHub resources

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-snpstats

  BioConductor SnpMatrix and XSnpMatrix classes and methods

• sug: r-cran-ggplot2

  implementation of the Grammar of Graphics

• sug: r-cran-runit

  GNU R package providing unit testing framework

Download r-bioc-variantannotation

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	3,430.7 kB	4,828.0 kB	[list of files]
arm64	3,429.9 kB	4,796.0 kB	[list of files]
armhf	3,403.7 kB	4,615.0 kB	[list of files]
ppc64el	3,500.2 kB	5,120.0 kB	[list of files]
riscv64	3,415.5 kB	4,668.0 kB	[list of files]
s390x	3,430.0 kB	4,864.0 kB	[list of files]