» Ubuntu » Packages » jammy » science

Software Packages in "jammy", Subsection science

abacas (1.3.1-9) [universe]
close gaps in genomic alignments from short reads
abacas-examples (1.3.1-9) [universe]
sample data for abacas to close gaps in genomic alignments
abinit (9.6.2-1build1) [universe]
package for electronic structure calculations
abinit-data (9.6.2-1build1) [universe]
package for electronic structure calculations (Data files)
abyss (2.3.1-1) [multiverse]
de novo, parallel, sequence assembler for short reads
acedb-other (4.9.39+dfsg.02-7) [universe]
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.02-7) [universe]
transitional package for belvu
acedb-other-belvu
virtual package provided by belvu
acedb-other-dotter (4.9.39+dfsg.02-7) [universe]
transitional package for dotter
acedb-other-dotter
virtual package provided by dotter
aces3 (3.0.8-8) [universe]
Advanced Concepts in Electronic Structure III
aces3-data (3.0.8-8) [universe]
Advanced Concepts in Electronic Structure III
achilles (2-10) [universe]
Artificial life and evolution simulator
adapterremoval (2.3.2-1ubuntu1) [universe]
rapid adapter trimming, identification, and read merging of gene sequences
adapterremoval-examples (2.3.2-1ubuntu1) [universe]
rapid adapter trimming, identification, and read merging (example data)
adms (2.3.7-1) [universe]
Automatic device model synthesizer for Verilog-AMS
adun-core (0.81-14build2) [universe]
Molecular Simulator
adun.app (0.81-14build2) [universe]
Molecular Simulator for GNUstep (GUI)
aegean (0.16.0+dfsg-2) [universe]
integrated genome analysis toolkit
aeskulap (0.2.2-beta2+git20190406.ef77f01-3build2) [universe]
medical image viewer and DICOM network client
aevol (5.0+ds-3) [universe]
digital genetics model to run Evolution Experiments in silico
aghermann (1.1.2-3build3) [universe]
Sleep-research experiment manager
aladin (11.024+dfsg2-1) [universe]
Interactive sky atlas for astronomical images and datasets
alfa (2.1-1) [universe]
Automated Line Fitting Algorithm
algotutor (0.8.6-4) [universe]
program for observing the intermediate steps of algorithm
alien-hunter (1.7-8) [universe]
Interpolated Variable Order Motifs to identify horizontally acquired DNA
allelecount (4.3.0-1.1) [universe]
NGS copy number algorithms
altree (1.3.2-1build2) [universe]
program to perform phylogeny-based association and localization analysis
altree-examples (1.3.2-1build2) [universe]
example files for ALTree
amap-align (2.2+git20080214.600fc29+dfsg-2) [universe]
Protein multiple alignment by sequence annealing
ampliconnoise (1.29-10build1) [universe]
removal of noise from 454 sequenced PCR amplicons
andi (0.14-2) [universe]
Efficient Estimation of Evolutionary Distances
anfo (0.98-9) [universe]
Short Read Aligner/Mapper from MPG
aoflagger (3.1.0-2build3) [universe]
Find RFI in radio astronomical observations
apbs (3.0.0+dfsg1-3build2) [universe]
Adaptive Poisson Boltzmann Solver
apbs-data (3.0.0+dfsg1-3build2) [universe]
data files for APBS (Adaptive Poisson Boltzmann Solver)
apertium-af-nl (0.3.0-2) [universe]
Transitional dummy package for apertium-afr-nld
apertium-afr-nld (0.3.0-2) [universe]
Apertium translation data for the Afrikaans-Dutch pair
apertium-anaphora (1.0.2-1) [universe]
Anaphora resolution module for Apertium
apertium-apy (0.11.7-2) [universe]
Apertium APY service
apertium-arg-cat (0.2.0-2) [universe]
Apertium translation data for the Aragonese-Catalan pair
apertium-bel-rus (0.2.1-1) [universe]
Apertium translation data for the Belarusian-Russian pair
apertium-br-fr (0.5.1-1) [universe]
Apertium linguistic data to translate between Breton and French
apertium-ca-it (0.2.1-3) [universe]
Transitional dummy package for apertium-cat-ita
apertium-cat-ita (0.2.1-3) [universe]
Apertium translation data for the Catalan-Italian pair
apertium-cat-srd (1.1.0-1) [universe]
Apertium translation data for the Catalan-Sardinian pair
apertium-crh-tur (0.3.0-1) [universe]
Apertium translation data for the Crimean Tatar-Turkish pair
apertium-cy-en (0.1.1~r57554-8) [universe]
Apertium translation data for the Welsh-English pair
apertium-dan-nor (1.4.1-2) [universe]
Apertium translation data for the Danish-Norwegian pair
apertium-dev (3.7.2-2build2) [universe]
Development tools and library for Apertium
apertium-en-gl (0.5.2~r57551-3) [universe]
Apertium translation data for the English-Galician pair
apertium-eng-cat (1.0.1-4) [universe]
Apertium translation data for the English-Catalan pair
apertium-eo-en (1.0.0~r63833-3) [universe]
Apertium linguistic data to translate between Esperanto and English
apertium-eo-fr (0.9.1-1) [universe]
Apertium translation data for the Esperanto-French pair
apertium-es-ast (1.1.0~r51165-3) [universe]
Apertium translation data for the Spanish-Asturian pair
apertium-es-it (0.2.1-2) [universe]
Transitional dummy package for apertium-spa-ita
apertium-eu-en (0.3.1~r56205-3) [universe]
Apertium translation data for the Basque-English pair
apertium-eval-translator (1.2.1-2) [universe]
Evaluate machine translation output against reference
apertium-fra-cat (1.9.0-1) [universe]
Apertium translation data for the French-Catalan pair
apertium-fra-frp (1.0.0-2) [universe]
Apertium translation data for the French-Arpitan pair
apertium-get (1.0.0-2) [universe]
Helper for Apertium and Giellatekno languages and pairs
apertium-hbs-eng (0.5.1-1) [universe]
Apertium translation data for the Serbo-Croatian - English pair
apertium-hbs-mkd (0.1.0~r76450-4) [universe]
Apertium translation data for the Serbo-Croatian-Macedonian pair
apertium-hbs-slv (0.5.1-1) [universe]
Apertium translation data for the Serbo-Croatian-Slovenian pair
apertium-hin (0.1.0~r59158-2.1) [universe]
Apertium single language data for Hindi
apertium-id-ms (0.1.2-3) [universe]
Transitional dummy package for apertium-ind-zlm
apertium-ind-zlm (0.1.2-3) [universe]
Apertium translation data for the Indonesian-Malay pair
apertium-is-sv (0.1.0~r76450-3) [universe]
Apertium translation data for the Icelandic-Swedish pair
apertium-isl (0.1.0~r65494-2.1) [universe]
Apertium single language data for Icelandic
apertium-isl-eng (0.1.0~r66083-3) [universe]
Apertium translation data for the Icelandic-English pair
apertium-ita (0.10.0~r82237-2.1) [universe]
Apertium single language data for Italian
apertium-kaz-tat (0.2.1-1) [universe]
Apertium translation data for the Kazakh-Tatar pair
apertium-lex-tools (0.2.7-1build1) [universe]
Constraint-based lexical selection module
apertium-mk-bg (0.2.0~r49489-3) [universe]
Apertium translation data for the Macedonian-Bulgarian pair
apertium-mk-en (0.1.1~r57554-3) [universe]
Apertium translation data for the Macedonian-English pair
apertium-mlt-ara (0.2.0~r62623-2.1) [universe]
Apertium translation data for the Maltese-Arabic pair
apertium-nno-nob (1.3.0-2) [universe]
Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
apertium-oci-fra (0.3.0-3) [universe]
Apertium translation data for the Occitan-French pair
apertium-pol-szl (0.2.1-2) [universe]
Apertium translation data for the Polish-Silesian pair
apertium-por-cat (0.10.0-1) [universe]
Apertium translation data for the Portuguese-Catalan pair
apertium-recursive (1.0.1-1) [universe]
Apertium recursive structural transfer module
apertium-rus-ukr (0.2.1-2) [universe]
Apertium translation data for the Russian-Ukrainian pair
apertium-separable (0.3.6-2) [universe]
Reordering separable/discontiguous multiwords
apertium-sme-nob (0.6.1+ds.1-2) [universe]
Apertium translation data for the Northern Sami-Norwegian Bokmål pair
apertium-spa (1.1.0~r79716-2.1) [universe]
Apertium single language data for Spanish
apertium-spa-arg (0.5.0-1) [universe]
Apertium translation data for the Spanish-Aragonese pair
apertium-spa-cat (2.2.0-2) [universe]
Apertium translation data for the Spanish-Catalan pair
apertium-spa-ita (0.2.1-2) [universe]
Apertium translation data for the Spanish-Italian pair
apertium-srd-ita (1.1.0-1) [universe]
Apertium translation data for the Sardinian-Italian pair
apertium-swe-dan (0.8.1-2) [universe]
Apertium translation data for the Swedish-Danish pair
apertium-swe-nor (0.3.1-1) [universe]
Apertium translation data for the Swedish-Norwegian pair
apertium-urd (0.1.0~r61311-2.1) [universe]
Apertium single language data for Urdu
apertium-urd-hin (0.1.0~r64379-3) [universe]
Apertium translation data for the Urdu-Hindi pair
aragorn (1.2.38-4) [universe]
tRNA and tmRNA detection in nucleotide sequences
arb (6.0.6-5) [multiverse]
phylogenetic sequence analysis suite - main program
arb-common (6.0.6-5) [multiverse]
phylogenetic sequence analysis suite - common files
arden (1.0-5) [universe]
specificity control for read alignments using an artificial reference
ariba (2.14.6+ds-3build1) [universe]
Antibiotic Resistance Identification By Assembly
art-nextgen-simulation-tools (20160605+dfsg-4build2) [universe]
simulation tools to generate synthetic next-generation sequencing reads
art-nextgen-simulation-tools-profiles (20160605+dfsg-4build2) [universe]
profiles for art simulation tools
artemis (18.1.0+dfsg-6) [universe]
genome browser and annotation tool
artfastqgenerator (0.0.20150519-4) [universe]
outputs artificial FASTQ files derived from a reference genome
artfastqgenerator-examples (0.0.20150519-4) [universe]
outputs artificial FASTQ files derived from a reference genome (examples)
asdftool (2.9.2-1) [universe]
Command line tool to manipulate ASDF scientific data files
ase (3.22.1-1ubuntu1) [universe]
Atomic Simulation Environment
assembly-stats (1.0.1+ds-5) [universe]
get assembly statistics from FASTA and FASTQ files
assemblytics (1.2.1+dfsg-1) [universe]
detect and analyze structural variants from a genome assembly
astap (2022.03.01-3) [universe]
astrometric (plate) solver, stacking of images, photometry and FITS viewer
astap-cli (2022.03.01-1) [universe]
astrometric (plate) solver, command line version
astro-tasks (3.0) [universe]
Debian Astronomy Pure Blend (tasksel tasks)
astromatic (1.2) [universe]
Astronomical pipeline software collection
astrometry-data-2mass (1.1) [multiverse]
Astrometry.net 2MASS index files downloader
astrometry-data-2mass-00 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (2'-2.8')
astrometry-data-2mass-01 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (2.8'-4')
astrometry-data-2mass-02 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (4'-5.6')
astrometry-data-2mass-03 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (5.6'-8')
astrometry-data-2mass-04 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (8'-11')
astrometry-data-2mass-05 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (11'-16')
astrometry-data-2mass-06 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (16'-22')
astrometry-data-2mass-07 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (22'-30')
astrometry-data-2mass-08-19 (1.1) [multiverse]
Astrometry.net 2MASS index files downloader (30'-2000')
astrometry-data-tycho2 (2-4) [universe]
Astrometry.net Tycho-2 index files
astrometry-data-tycho2-07 (2-4) [universe]
Astrometry.net Tycho-2 index files (22'-30')
astrometry-data-tycho2-07-bigendian (2-4) [universe]
Astrometry.net Tycho-2 big endian index files (22'-30')
astrometry-data-tycho2-07-littleendian (2-4) [universe]
Astrometry.net Tycho-2 little endian index files (22'-30')
astrometry-data-tycho2-08 (2-4) [universe]
Astrometry.net Tycho-2 index files (30'-44')
astrometry-data-tycho2-08-bigendian (2-4) [universe]
Astrometry.net Tycho-2 big endian index files (30'-44')
astrometry-data-tycho2-08-littleendian (2-4) [universe]
Astrometry.net Tycho-2 little endian index files (30'-44')
astrometry-data-tycho2-09 (2-4) [universe]
Astrometry.net Tycho-2 index files (44'-60')
astrometry-data-tycho2-09-bigendian (2-4) [universe]
Astrometry.net Tycho-2 big endian index files (44'-60')
astrometry-data-tycho2-09-littleendian (2-4) [universe]
Astrometry.net Tycho-2 little endian index files (44'-60')
astrometry-data-tycho2-10-19 (2-4) [universe]
Astrometry.net Tycho-2 index files (60'-2000')
astrometry-data-tycho2-10-19-bigendian (2-4) [universe]
Astrometry.net Tycho-2 big endian index files (60'-2000')
astrometry-data-tycho2-10-19-littleendian (2-4) [universe]
Astrometry.net Tycho-2 little endian index files (60'-2000')
astrometry.net (0.89+dfsg-1) [universe]
Astrometry plate solver
astronomical-almanac (5.6-7) [universe]
astronomical almanac - calculate planet and star positions
atac (0~20150903+r2013-8build2) [universe]
genome assembly-to-assembly comparison
ataqv (1.3.0+ds-1) [universe]
ATAC-seq QC and visualization
atropos (1.1.29+dfsg-1ubuntu1) [universe]
NGS read trimming tool that is specific, sensitive, and speedy
augur (14.0.0-1) [universe]
pipeline components for real-time virus analysis
augustus (3.4.0+dfsg2-3build1) [universe]
gene prediction in eukaryotic genomes
augustus-data (3.4.0+dfsg2-3build1) [universe]
data files for AUGUSTUS
autodock (4.2.6-9) [universe]
analysis of ligand binding to protein structure
autodock-getdata (4.2.6-9) [universe]
instructions for getData to collect compounds
autodock-test (4.2.6-9) [universe]
test files for AutoDock
autodock-vina (1.2.3-2) [universe]
docking of small molecules to proteins
autogrid (4.2.6-9) [universe]
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.6-9) [universe]
test files for AutoGrid
avce00 (2.0.0-8) [universe]
Conversion of ESRI Arcinfo Vector Coverage in E00 format
avogadro (1.95.1-2) [universe]
Molecular Graphics and Modelling System
avogadro-utils (1.95.1-8) [universe]
Molecular Graphics and Modelling System (library)
axe-demultiplexer (0.3.3+dfsg-3build1) [universe]
Trie-based DNA sequencing read demultiplexer
bagel (1.2.2-3ubuntu1) [universe]
Computational Chemistry Package
baitfisher (1.2.7+git20211020.de26d5c+dfsg-1) [universe]
software package for designing hybrid enrichment probes
bali-phy (3.6.1+dfsg-1) [universe]
Bayesian Inference of Alignment and Phylogeny
ballview (1.5.0+git20180813.37fc53c-10build1) [universe]
free molecular modeling and molecular graphics tool
bamclipper (1.0.0-2) [universe]
Remove gene-specific primer sequences from SAM/BAM alignments
bamkit (0.0.1+git20170413.ccd079d-3) [universe]
tools for common BAM file manipulations
bamtools (2.5.1+dfsg-10build1) [universe]
toolkit for manipulating BAM (genome alignment) files
bandage (0.9.0-1) [universe]
Bioinformatics Application for Navigating De novo Assembly Graphs Easily
bandage-examples (0.9.0-1) [universe]
Bioinformatics Application for Navigating De novo Assembly Graphs Easily (data)
barrnap (0.9+dfsg-2) [universe]
rapid ribosomal RNA prediction
bart (0.7.00-2) [universe]
tools for computational magnetic resonance imaging
bart
virtual package provided by bart-cuda
bart-cuda (0.7.00-5) [multiverse]
tools for computational magnetic resonance imaging
bart-view (0.1.00-6) [universe]
viewer for multi-dimensional complex-valued data
bbmap (38.95+dfsg-1) [universe]
BBTools genomic aligner and other tools for short sequences
bbmap-jni (38.95+dfsg-1) [universe]
short read aligner and other bioinformatic tools - JNI library
bcalm (2.2.3-2) [universe]
de Bruijn compaction in low memory
bcftools (1.13-1) [universe]
genomic variant calling and manipulation of VCF/BCF files
beads (1.1.20-3) [universe]
2-DE electrophoresis gel image spot detection
beagle (220208-1) [universe]
Genotype calling, genotype phasing and imputation of ungenotyped markers
beast-mcmc (1.10.4+dfsg-3) [multiverse]
Bayesian MCMC phylogenetic inference
beast2-mcmc (2.6.6+dfsg-2) [universe]
Bayesian MCMC phylogenetic inference
bedops (2.4.40+dfsg-1) [universe]
high-performance genomic feature operations
bedtools (2.30.0+dfsg-2) [universe]
suite of utilities for comparing genomic features
bedtools-test (2.30.0+dfsg-2) [universe]
test data for the bedtools package
belvu (4.44.1+dfsg-7build1) [universe]
multiple sequence alignment viewer and phylogenetic tool
berkeley-express (1.5.3+dfsg-2) [universe]
Streaming quantification for high-throughput sequencing
bio-eagle (2.4.1-3build1) [universe]
Haplotype phasing within a genotyped cohort or using a phased reference panel
bio-eagle-examples (2.4.1-3build1) [universe]
Examples for bio-eagle
bio-rainbow (2.0.4+dfsg-2) [universe]
clustering and assembling short reads for bioinformatics
bio-vcf (0.9.5-3) [universe]
domain specific language (DSL) for processing the VCF format
bioawk (1.0-4) [universe]
extension of awk for biological sequence analysis
biobambam2 (2.0.183+ds-1) [universe]
tools for early stage alignment file processing
biogenesis (0.8-3.1) [universe]
artificial life program that simulates evolution of organisms
bioperl (1.7.8-1) [universe]
Perl tools for computational molecular biology
bioperl-run (1.7.3-8) [universe]
BioPerl wrappers: scripts
biosig-tools (2.3.3-1build2) [universe]
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-12) [universe]
utilities for biological sequence analysis
biosyntax (1.0.0b-2) [universe]
Syntax Highlighting for Computational Biology (metapackage)
biosyntax-common (1.0.0b-2) [universe]
Syntax Highlighting for Computational Biology (common files)
biosyntax-example (1.0.0b-2) [universe]
Syntax Highlighting for Computational Biology (example)
biosyntax-gedit (1.0.0b-2) [universe]
Syntax Highlighting for Computational Biology (gedit)
biosyntax-less (1.0.0b-2) [universe]
Syntax Highlighting for Computational Biology (less)
biosyntax-vim (1.0.0b-2) [universe]
Syntax Highlighting for Computational Biology (vim)
bitseq (0.7.5+dfsg-6) [universe]
Bayesian Inference of Transcripts from Sequencing Data
bitwise (0.43-1) [universe]
Interactive bitwise operation in ncurses
bkchem (0.14.0~pre4+git20211228-1) [universe]
Chemical structures editor
blasr (5.3.5+dfsg-3build1) [universe]
mapping single-molecule sequencing reads
blimps-utils (3.9+ds-1) [multiverse]
blocks database improved searcher
blinken (4:21.12.3-0ubuntu1) [universe]
KDE version of the Simon electronic memory game
blixem (4.44.1+dfsg-7build1) [universe]
interactive browser of sequence alignments
bmt (0.6-1.1) [universe]
software analysis benchmarking toolkit
bodr (10-2) [universe]
Blue Obelisk Data Repository
bolt-lmm (2.3.6+dfsg-1) [universe]
Efficient large cohorts genome-wide Bayesian mixed-model association testing
bolt-lmm-example (2.3.6+dfsg-1) [universe]
Examples for bolt-lmm
boolector (1.5.118.6b56be4.121013-1.1) [universe]
SMT solver for bit-vectors and arrays
bornagain (1.19.0-3build2) [universe]
Simulate and fit X-ray and neutron GISAS -- binary
bowtie (1.3.1-1) [universe]
Ultrafast memory-efficient short read aligner
bowtie-examples (1.3.1-1) [universe]
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.4.4-1) [universe]
ultrafast memory-efficient short read aligner
bowtie2-examples (2.4.4-1) [universe]
Examples for bowtie2
boxshade (3.3.1-14) [universe]
Pretty-printing of multiple sequence alignments
bppphyview (0.6.1-3) [universe]
Bio++ Phylogenetic Viewer
bppsuite (2.4.1-4) [universe]
Bio++ program suite
bppsuite-examples (2.4.1-4) [universe]
Examples for Bio++ program suite
brain2mesh-demos (0.7.9-2) [universe]
sample files and demo scripts for Brain2Mesh
brig (0.95+dfsg-3) [universe]
BLAST Ring Image Generator
busco (5.2.2-2) [universe]
benchmarking sets of universal single-copy orthologs
bustools (0.41.0+dfsg-1) [universe]
program for manipulating BUS files for single cell RNA-Seq datasets
bwa (0.7.17-6) [universe]
Burrows-Wheeler Aligner
c2x (2.40+ds-1) [universe]
converter between DFT electronic structure codes formats
cafeobj (1.6.0-2) [universe]
new generation algebraic specification and programming language
cafeobj-mode (1.6.0-2) [universe]
Emacs major mode for editing CafeOBJ source code
calculix-ccx (2.17-3) [universe]
Three-Dimensional Structural Finite Element Program
calculix-cgx (2.17+dfsg-2) [universe]
Calculix cgx is a 3-dimensional pre- and post-processor for fem
callisto (1.1.0-2build1) [universe]
Daemon for e-Callisto hardware
camitk-actionstatemachine (5.0.2-3) [universe]
pipeline replay application for the CamiTK library
camitk-config (5.0.2-3) [universe]
Computer Assisted Medical Intervention Tool Kit - config
camitk-imp (5.0.2-3) [universe]
workbench application for the CamiTK library
canu (2.0+dfsg-2) [universe]
single molecule sequence assembler for genomes
casacore-data-igrf (12-1) [universe]
International Geomagnetic Reference Field data for casacore
casacore-data-jpl-de200 (2007.07.05+ds.1-1) [universe]
Jet Propulsion Laboratory Development Ephemeris DE200 for casacore
casacore-data-jpl-de405 (2007.07.05+ds.1-1) [universe]
Jet Propulsion Laboratory Development Ephemeris DE405 for casacore
casacore-data-lines (0+git2016.11.26-2) [universe]
Table of spectral line frequencies for casacore
casacore-data-observatories (0+git2018.12.08-2) [universe]
Table of radio observatory coordinates for casacore
casacore-data-sources (2-2) [universe]
Table of ICRF reference source coordinates for casacore
casacore-data-tai-utc (1.3) [universe]
Difference table between TAI and UTC for casacore
casacore-tools (3.4.0-2build1) [universe]
Tools built with CASA
cassbeam (1.1-3) [universe]
Cassegrain antenna modelling
cassiopee (1.0.9-3build1) [universe]
index and search tool in genomic sequences
cat-bat (5.2.3-1) [universe]
taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
catfishq (1.3.0+ds-1) [universe]
concatenates fastq files
cba (0.3.6-5build1) [universe]
Continuous Beam Analysis
cbflib-bin (0.9.6+dfsg1-3build1) [universe]
utilities to manipulate CBF files
cbmc (5.12-5) [universe]
bounded model checker for C and C++ programs
cclib (1.6.2-2) [universe]
Parsers and algorithms for computational chemistry
cclib-data (1.6.2-2) [multiverse]
Parsers and algorithms for computational chemistry (data files)
cct (1:1.0.3-1) [universe]
visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
cct-examples (1:1.0.3-1) [universe]
example data for testing the package cct
cd-hit (4.8.1-4) [universe]
suite of programs designed to quickly group sequences
cdbfasta (1.00+git20181005.014498c+dfsg-4build1) [universe]
Constant DataBase indexing and retrieval tools for multi-FASTA files
centrifuge (1.0.3-10) [universe]
rapid and memory-efficient system for classification of DNA sequences
cg3 (1.3.2-1build2) [universe]
Tools for using the 3rd edition of Constraint Grammar (CG-3)
cg3-dev (1.3.2-1build2) [universe]
Metapackage providing both CG-3 CLI dev tools and dev library
cgns-convert (3.4.0-3) [universe]
CFD General Notation System - Conversion tools
cgview (0.0.20100111-7) [universe]
Circular Genome Viewer
changeo (1.2.0-1) [universe]
Repertoire clonal assignment toolkit (Python 3)
checkit-tiff (0.4.2-1) [universe]
conformance checker for baseline TIFFs
chemical-structures (2.2.dfsg.0-19) [universe]
web service providing molecular structures in open formats
chemical-structures-data (2.2.dfsg.0-19) [universe]
set of molecular structures in open formats
chemps2 (1.8.11-1build1) [universe]
Executable to call libchemps2-3 from the command line
chemtool (1.6.14-6) [universe]
chemical structures drawing program
chimeraslayer (20101212+dfsg1-5) [universe]
detects likely chimeras in PCR amplified DNA
chip-seq (1.5.5-3) [universe]
tools performing common ChIP-Seq data analysis tasks
chip-seq-data (1.5.5-3) [universe]
tools performing common ChIP-Seq data analysis tasks (data)
chromhmm (1.23+dfsg-1) [universe]
Chromatin state discovery and characterization
chromimpute (1.0.3+dfsg-3) [universe]
Large-scale systematic epigenome imputation
cif-linguist (0.4.2-3build1) [universe]
transform CIF data among CIF formats and dialects
cif-tools (1.0.1b-1) [universe]
Suite of tools to manipulate, validate and query mmCIF files
circlator (1.5.6-6) [universe]
circularize genome assemblies
circos (0.69.9+dfsg-2) [universe]
plotter for visualizing data
circos-tools (0.23-1) [universe]
plotter for visualizing data - helper utilities
ckon (0.7.1-4build1) [universe]
automatic build tool for ROOT data analysis software
clearcut (1.0.9+git20211013.b799afe-1) [universe]
extremely efficient phylogenetic tree reconstruction
clonalframe (1.2-11build1) [universe]
inference of bacterial microevolution using multilocus sequence data
clonalframeml (1.12-2) [universe]
Efficient Inference of Recombination in Whole Bacterial Genomes
clonalorigin (1.0-6build1) [universe]
inference of homologous recombination in bacteria using whole genome sequences
clustalo (1.2.4-7) [universe]
General-purpose multiple sequence alignment program for proteins
clustalw (2.1+lgpl-7) [universe]
global multiple nucleotide or peptide sequence alignment
clustalx (2.1+lgpl-9) [multiverse]
Multiple alignment of nucleic acid and protein sequences (graphical interface)
cluster3 (1.59+ds-3build1) [multiverse]
Reimplementation of the Eisen-clustering software
cmor-tables (3.3-1.1) [universe]
MIP tables for the Climate Model Output Rewriter library
cmtk (3.3.1p2+dfsg-1build1) [universe]
Computational Morphometry Toolkit
cnvkit (0.9.9-2) [universe]
Copy number variant detection from targeted DNA sequencing
cod-tools (3.4.0+dfsg-1build2) [universe]
tools for manipulating CIF format files
code-saturne (6.0.2-2build1) [universe]
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (6.0.2-2build1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (6.0.2-2build1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-include (6.0.2-2build1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - includes
codonw (1.4.4-6) [universe]
Correspondence Analysis of Codon Usage
coinor-cbc (2.10.7+ds1-1) [universe]
Coin-or branch-and-cut mixed integer programming solver
coinor-clp (1.17.5+repack1-1) [universe]
Coin-or linear programming solver
coinor-csdp (6.2.0-4) [universe]
Software package for semidefinite programming (binaries)
coinor-libcbc3 (2.10.7+ds1-1) [universe]
Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl1 (0.60.3+repack1-3) [universe]
COIN-OR Cut Generation Library
coinor-libclp1 (1.17.5+repack1-1) [universe]
Coin-or linear programming solver (shared libraries)
coinor-libcoinutils3v5 (2.11.4+repack1-2) [universe]
Coin-or collection of utility classes (binaries and libraries)
coinor-libosi1v5 (0.108.6+repack1-2) [universe]
COIN-OR Open Solver Interface
coinor-libsymphony3 (5.6.17+dfsg-1) [universe]
COIN-OR solver for mixed-integer linear programs (shared libraries)
coinor-libvol1 (1.5.4-4) [universe]
Coin-or linear programming solver (libraries)
coinor-symphony (5.6.17+dfsg-1) [universe]
COIN-OR solver for mixed-integer linear programs
colmap (3.7-2) [universe]
Structure-from-Motion and Multi-View Stereo
comet-ms (2019015+cleaned1-3) [universe]
Tandem mass spectrometry (MS/MS) search engine
concavity (0.1+dfsg.1-5) [universe]
predictor of protein ligand binding sites from structure and conservation
conda-package-handling (1.7.3-2build1) [universe]
create and extract conda packages of various formats
connectome-workbench (1.5.0-2) [universe]
brain visualization, analysis and discovery tool
conservation-code (20110309.0-8) [universe]
protein sequence conservation scoring tool
covtobed (1.3.5+dfsg-1) [universe]
convert the coverage track from a BAM file into a BED file
covtobed-examples (1.3.5+dfsg-1) [universe]
example data and scripts for mindthegap
cp2k (9.1-2) [universe]
Ab Initio Molecular Dynamics
cp2k-data (9.1-2) [universe]
Ab Initio Molecular Dynamics (data files)
cpl-plugin-amber (4.4.1+dfsg-1) [universe]
ESO data reduction pipeline for the AMBER instrument
cpl-plugin-amber-calib (4.4.1+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for AMBER
cpl-plugin-fors (5.5.7+dfsg-2build1) [universe]
ESO data reduction pipeline for the FORS1/2 instruments
cpl-plugin-fors-calib (5.5.7+dfsg-2build1) [universe]
ESO data reduction pipeline calibration data downloader for FORS2
cpl-plugin-giraf (2.16.8+dfsg-1) [universe]
ESO data reduction pipeline for the GIRAFFE instrument
cpl-plugin-giraf-calib (2.16.8+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for GIRAFFE
cpl-plugin-hawki (2.4.9+dfsg-1build1) [universe]
ESO data reduction pipeline for the HAWK-I instrument
cpl-plugin-hawki-calib (2.4.9+dfsg-1build1) [universe]
ESO data reduction pipeline calibration data downloader for HAWK-I
cpl-plugin-muse (2.8.5+dfsg-1) [universe]
ESO data reduction pipeline for the MUSE instrument
cpl-plugin-muse-calib (2.8.5+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for MUSE
cpl-plugin-naco (4.4.10+dfsg-2build1) [universe]
ESO data reduction pipeline for the NaCo instrument
cpl-plugin-naco-calib (4.4.10+dfsg-2build1) [universe]
ESO data reduction pipeline NaCo calibration data downloader
cpl-plugin-uves (6.1.6+dfsg-1build1) [universe]
ESO data reduction pipeline for the UVES instrument
cpl-plugin-uves-calib (6.1.6+dfsg-1build1) [universe]
ESO data reduction pipeline calibration data downloader for UVES
cpl-plugin-vimos (4.1.6+dfsg-2build1) [universe]
ESO data reduction pipeline for the VIMOS instrument
cpl-plugin-vimos-calib (4.1.6+dfsg-2build1) [universe]
ESO data reduction pipeline calibration data downloader for VIMOS
cpl-plugin-visir (4.3.11+dfsg-1) [universe]
ESO data reduction pipeline for the VISIR instrument
cpl-plugin-visir-calib (4.3.11+dfsg-1) [universe]
ESO data reduction pipeline calibration data downloader for VISIR
cpl-plugin-xshoo (3.5.3+dfsg-1build1) [universe]
ESO data reduction pipeline for the XSHOOTER instrument
cpl-plugin-xshoo-calib (3.5.3+dfsg-1build1) [universe]
ESO data reduction pipeline calibration data downloader for XSHOOTER
cpuinfo (0.0~git20220131.85e931e-1) [universe]
CPU INFOrmation library (binary utilities)
crac (2.5.2+dfsg-5) [universe]
integrated RNA-Seq read analysis
critterding (1.0-beta12.1-1.3build1) [universe]
Evolving Artificial Life
ctdconverter (2.1-4) [universe]
Convert CTD files into Galaxy tool and CWL CommandLineTool files
ctsim (6.0.2-5) [universe]
Computed tomography simulator
ctsim-help (6.0.2-5) [universe]
Online help file for CTSim
cufflinks (2.2.1+dfsg.1-9) [multiverse]
Transcript assembly, differential expression and regulation for RNA-Seq
cutadapt (3.5-1build1) [universe]
Clean biological sequences from high-throughput sequencing reads
cutesv (1.0.13-1) [universe]
comprehensive discovery of structural variations of genomic sequences
cwl-upgrader (1.2.2-1) [universe]
Common Workflow Language standalone document upgrader
cwlformat (2021.01.05-1) [universe]
code formatter for Common Workflow Language
cwltool (3.1.20220224085855-1) [universe]
Common Workflow Language reference implementation
daligner (1.0+git20200727.ed40ce5-3) [universe]
local alignment discovery between long nucleotide sequencing reads
damapper (0.0+git20210330.ab45103-1) [universe]
long read to reference genome mapping tool
darknet (0.0.0+git20180914.61c9d02e-2build4) [universe]
Open Source Neural Networks in C
dascrubber (1.1-4) [universe]
alignment-based scrubbing pipeline for DNA sequencing reads
datalad (0.15.5-1) [universe]
data files management and distribution platform
datalad-container (1.1.2-1) [universe]
DataLad extension for working with containerized environments
dawg (1.2-4) [universe]
simulate the evolution of recombinant DNA sequences
dazzdb (1.0+git20201103.8d98c37-1.1) [universe]
manage nucleotide sequencing read data
dcm2niix (1.0.20211006-1build1) [universe]
next generation DICOM to NIfTI converter
dcmtk (3.6.6-5) [universe]
OFFIS DICOM toolkit command line utilities
(3.0) [universe]
Debian Astronomy Pure Blends Logo
deepnano (0.0+git20170813.e8a621e-3.1build1) [universe]
alternative basecaller for MinION reads of genomic sequences
deepnano-data (0.0+git20170813.e8a621e-3.1build1) [universe]
alternative basecaller for MinION reads of genomic sequences (data)
delly (0.9.1-1) [universe]
Structural variant discovery by read analysis
density-fitness (1.0.3-1) [universe]
Calculates per-residue electron density scores
dextractor (1.0-5) [universe]
(d)extractor and compression command library
dh-r (20210218ubuntu1) [universe]
Debian helper tools for packaging R libraries
dialign (2.2.1-11) [universe]
Segment-based multiple sequence alignment
dialign-tx (1.0.2-14) [universe]
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-14) [universe]
Segment-based multiple sequence alignment (data files)
diamond-aligner (2.0.14-1) [universe]
accelerated BLAST compatible local sequence aligner
dicomnifti (2.33.1-3) [universe]
converts DICOM files into the NIfTI format
dicompyler (0.4.2.0+git20200106.2643e0e-1) [universe]
radiation therapy research platform
dimbl (0.15-2.1build2) [universe]
Distributed Memory Based Learner
discosnp (1:2.6.2-1) [universe]
discovering Single Nucleotide Polymorphism from raw set(s) of reads
disulfinder (1.2.11-12) [universe]
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-12) [universe]
data files for predictor of disulfide bonds in proteins
dlmodelbox (1.1.1-1) [universe]
Swiss Army Knife of Deep Learning Models
dmrgpp (6.02-2) [universe]
Density matrix renormalization group algorithm
dnaclust (3-7build2) [universe]
tool for clustering millions of short DNA sequences
dnapi (1.1-3) [universe]
adapter prediction for small RNA sequencing - utils
doris (5.0.3~beta+dfsg-16) [multiverse]
Delft object-oriented radar interferometric software
dotter (4.44.1+dfsg-7build1) [universe]
detailed comparison of two genomic sequences
dozzaqueux (3.51-2.1) [universe]
simulator for chemical mixtures
dozzaqueux-data (3.51-2.1) [universe]
databases for chemical mixtures
dpuser (4.1+dfsg-1build1) [universe]
Interactive language for handling numbers, strings, and matrices
drawxtl (5.5-5build1) [universe]
crystal structure viewer
drop-seq-testdata (2.5.1+dfsg-2) [universe]
analyzing Drop-seq data (testdata)
drop-seq-tools (2.5.1+dfsg-2) [universe]
analyzing Drop-seq data
drs4eb (5.0.6+git20211217+ds-1) [universe]
DRS4 Evaluation Board software
drslib (0.3.1.p3-2) [universe]
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.4build1) [universe]
Software for Semidefinite Programming
dssp (4.0.4-1) [universe]
protein secondary structure assignment based on 3D structure
dwgsim (0.1.13-1) [universe]
short sequencing read simulator
dx (1:4.4.4-15) [universe]
OpenDX (IBM Visualization Data Explorer) - main package
dxf2gcode (20170925-4) [universe]
prepares drawings of parts for automatic machine tools
dxsamples (4.4.0-5) [universe]
Sample programs for the OpenDX Data Explorer
dyssol (1.0.2+ds2-1) [universe]
Tool for dynamic flowsheet simulation. Command line tool
dyssol-data (1.0.2+ds2-1) [universe]
Tool for dynamic flowsheet simulation. Data files
dyssol-gui (1.0.2+ds2-1) [universe]
Tool for dynamic flowsheet simulation. GUI
e-mem (1.0.1-5) [universe]
Efficient computation of Maximal Exact Matches for very large genomes
e00compr (1.0.1-6) [universe]
Program to read/write Arcinfo compressed E00 files
ea-utils (1.1.2+dfsg-9build1) [universe]
command-line tools for processing biological sequencing data
easychem (0.6-9) [universe]
Draw high-quality molecules and 2D chemical formulas
ecaccess (4.0.1-1.1) [universe]
clients to access ECMWF facilities
ecflow-client (5.8.1-1ubuntu1) [universe]
Client tools for Meteorological workflow
ecflow-server (5.8.1-1ubuntu1) [universe]
Meteorological workflow controller - server
ecopcr (1.0.1+dfsg-4) [universe]
estimate PCR barcode primers quality
edfbrowser (1.91+dfsg-1) [universe]
viewer for biosignal storage files such as bdf and edf
edlib-aligner (1.2.7-3build1) [universe]
edlib sequence alignment tool using edit distance
edtsurf (0.2009-10) [universe]
triangulated mesh surfaces for protein structures
eigensoft (7.2.1+dfsg-3build1) [universe]
reduction of population bias for genetic analyses
elastix (5.0.1-1) [universe]
toolbox for rigid and nonrigid registration of images
elk-lapw (7.2.42-2) [universe]
All-Electron Density-Functional Electronic Structure Code
elki (0.7.1-10.1) [universe]
Data mining algorithm development framework
elki-dev (0.7.1-10.1) [universe]
Data mining algorithm development framework - development files
elph (1.0.1-5) [universe]
DNA/protein sequence motif finder
embassy-domainatrix (0.1.660-4) [universe]
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.660-4) [universe]
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.660-3) [universe]
Extra EMBOSS commands to search for protein domains
emboss (6.6.0+dfsg-11ubuntu1) [universe]
European molecular biology open software suite
emboss-data (6.6.0+dfsg-11ubuntu1) [universe]
data files for the EMBOSS package
emboss-explorer (2.2.0-11) [universe]
web-based GUI to EMBOSS
emmax (0~beta.20100307-1) [universe]
genetic mapping considering population structure
engauge-digitizer (12.1+ds.1-1) [universe]
interactively extracts numbers from bitmap graphs or maps
ent (1.2debian-3) [universe]
pseudorandom number sequence test program
ergo (3.8-1build1) [universe]
Quantum chemistry program for large-scale calculations
ergo-data (3.8-1build1) [universe]
Quantum chemistry program for large-scale calculations - data package
eso-midas (21.02pl1.0-1) [universe]
European Southern Observatory Munich Image Data Analysis System
eso-midas-testdata (21.02pl1.0-1) [universe]
Test data files for ESO-MIDAS
eso-pipelines (1.3) [universe]
ESO VLT Instrument pipeline collection
esorex (3.13.5+ds-2) [universe]
Execution Tool for European Southern Observatory pipelines
estscan (3.0.3-6) [universe]
ORF-independent detector of coding DNA sequences
esys-particle (2.3.5+dfsg2-4ubuntu1) [universe]
Software for particle-based numerical modelling (MPI version)
etsf-io (1.0.4-5) [universe]
Binary tools to check, merge and read ETSF files
examl (3.0.22-3) [universe]
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
exonerate (2.4.0-5) [universe]
generic tool for pairwise sequence comparison
expeyes (4.8.8+repack-2) [universe]
hardware & software framework for developing science experiments
expeyes-clib (4.8.8+repack-2) [universe]
hardware & software framework for developing science experiments
eye (22.0203.1955~ds-1build1) [universe]
semantic web reasoning engine
eyes17 (4.8.8+repack-2) [universe]
hardware & software framework for developing science experiments
fast5 (0.6.5-6build1) [universe]
utilities for manipulating Oxford Nanopore Fast5 files
fasta3 (36.3.8h.2020-02-11-4) [multiverse]
tools for searching collections of biological sequences
fasta3-doc (36.3.8h.2020-02-11-4) [multiverse]
user guide for FASTA tools
fastahack (1.0.0+dfsg-9) [universe]
utility for indexing and sequence extraction from FASTA files
fastani (1.33-2build1) [universe]
Fast alignment-free computation of whole-genome Average Nucleotide Identity
fastaq (3.17.0-4) [universe]
FASTA and FASTQ file manipulation tools
fastdnaml (1.2.2-15) [universe]
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix100+dfsg-4) [universe]
faster version of pedigree programs of Linkage
fastlink-doc (4.1P-fix100+dfsg-4) [universe]
Some papers about fastlink
fastml (3.11-3) [universe]
maximum likelihood ancestral amino-acid sequence reconstruction
fastp (0.20.1+dfsg-1) [universe]
Ultra-fast all-in-one FASTQ preprocessor
fastq-pair (1.0-2) [universe]
Rewrites paired end fastq so all reads have a mate to separate out singletons
fastqc (0.11.9+dfsg-5) [universe]
quality control for high throughput sequence data
fastqtl (2.184+dfsg-8build1) [universe]
Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
fasttext (0.9.2-3build3) [universe]
Efficient learning of word representations and sentence classification library
fasttree (2.1.11-2) [universe]
phylogenetic trees from alignments of nucleotide or protein sequences
fcc (2.8-1build3) [universe]
Script to compile C/C++ programs and link to Fortran libraries
feedgnuplot (1.60-1) [universe]
Pipe-oriented frontend to Gnuplot
ffindex (0.9.9.9-5) [universe]
simple index/database for huge amounts of small files
figtree (1.4.4-5) [universe]
graphical phylogenetic tree viewer
filtlong (0.2.1-1) [universe]
quality filtering tool for long reads of genome sequences
filtlong-data (0.2.1-1) [universe]
quality filtering tool for long reads of genome sequences (testdata)
firm-phoenix-ware (4.7.5+repack-1) [universe]
firmware necessary for boxes issued by project PHOENIX
fitgcp (0.0.20150429-4) [universe]
fitting genome coverage distributions with mixture models
fitscut (1.4.4-5build1) [universe]
Extract cutouts from FITS image format files
fitsh (0.9.4-1) [universe]
Software package for astronomical image processing
fitspng (1.4-1build2) [universe]
FITS to PNG converter
fitsverify (4.20-4) [universe]
FITS File Format-Verification Tool
fityk (1.3.1-7) [universe]
general-purpose nonlinear curve fitting and data analysis
flash (1.2.11-2) [universe]
Fast Length Adjustment of SHort reads
flexbar (1:3.5.0-4ubuntu1) [universe]
flexible barcode and adapter removal for sequencing platforms
flextra (5.0-15) [universe]
Trajectory model for tracing air transport phenomena
fml-asm (0.1+git20190320.b499514-1) [universe]
tool for assembling Illumina short reads in small regions
foma (1:0.10.0-1) [universe]
Tools for constructing various finite-state automata
foma-bin (1:0.10.0-1) [universe]
Transitional package for foma
form (4.2.1+git20200217-1) [universe]
Symbolic manipulation system
fractalnow (0.8.2-4build1) [universe]
Fast, advanced fractal generator
(3.0.10+ds-1) [universe]
Free42 is a re-implementation of the HP-42S calculator
freebayes (1.3.6-1) [universe]
Bayesian haplotype-based polymorphism discovery and genotyping
freecad (0.19.2+dfsg1-3ubuntu1) [universe]
Extensible Open Source CAx program
freecad-common (0.19.2+dfsg1-3ubuntu1) [universe]
Extensible Open Source CAx program - common files
freecad-python3 (0.19.2+dfsg1-3ubuntu1) [universe]
Extensible Open Source CAx program - Python 3 binaries
freecontact (1.0.21-12) [universe]
fast protein contact predictor
frog (0.20-2build2) [universe]
tagger and parser for natural languages (runtime)
frogdata (0.18-2) [universe]
Data files for Frog
fsa (1.15.9+dfsg-6) [universe]
Fast Statistical Alignment of protein, RNA or DNA sequences
fsm-lite (1.0-7) [universe]
frequency-based string mining (lite)
ftools-fv (5.5.2+dfsg-1) [universe]
Tool for viewing and editing FITS format files
ftools-pow (5.5.2+dfsg-1) [universe]
Curve plotting and image display interface tool
funtools (1.4.8-1) [universe]
Minimal buy-in FITS utility package
fxt-tools (0.3.13-1) [universe]
Multithreaded tracing library
g3data (1:1.5.3-3build1) [universe]
extract data from scanned graphs
gabedit (2.5.1+ds-1) [universe]
graphical user interface to Ab Initio packages
galileo (0.5.1-8) [universe]
Utility to securely synchronize a Fitbit device with the Fitbit web service
galileo-daemon (0.5.1-8) [universe]
Utility to securely synchronize a Fitbit device - daemon
gamgi (0.17.3-3) [universe]
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.17.3-3) [universe]
General Atomistic Modelling Graphic Interface (data)
garli (2.1-7) [universe]
phylogenetic analysis of molecular sequence data using maximum-likelihood
garli-examples (2.1-7) [universe]
phylogenetic analysis of molecular sequence data (examples)
garli-mpi (2.1-7) [universe]
phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI)
garlic (1.6-3) [universe]
visualization program for biomolecules
gasic (0.0.r19-7) [universe]
genome abundance similarity correction
gasic-examples (0.0.r19-7) [universe]
genome abundance similarity correction (example data)
gatb-core (1.4.2+dfsg-8) [universe]
Genome Analysis Toolbox with de-Bruijn graph
gatb-core-testdata (1.4.2+dfsg-8) [universe]
Genome Analysis Toolbox with de-Bruijn graph (test data)
gausssum (3.0.2-2) [universe]
parse and display Gaussian, GAMESS, and etc's output
gazebo (11.10.2+dfsg-1) [universe]
Open Source Robotics Simulator - Binaries
gazebo-common (11.10.2+dfsg-1) [universe]
Open Source Robotics Simulator - Shared files
gazebo-plugin-base (11.10.2+dfsg-1) [universe]
Open Source Robotics Simulator - base plug-ins
gbrowse (2.56+dfsg-10build1) [universe]
GMOD Generic Genome Browser
gbrowse-calign (2.56+dfsg-10build1) [universe]
CAlign helper
gbrowse-data (2.56+dfsg-10build1) [universe]
Sample data to use GBrowse
gbutils (6.0-1build2) [universe]
utilities for command line econometrics
gchempaint (0.14.17-6.1) [universe]
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.14.17-6.1) [universe]
lightweight crystal structures visualizer
gcu-bin (0.14.17-6.1) [universe]
GNOME chemistry utils (helper applications)
gcx (1.3-1.1build2) [universe]
astronomical image processing and photometry gtk+ application
gdal-bin (3.4.1+dfsg-1build4) [universe]
Geospatial Data Abstraction Library - Utility programs
gdal-data (3.4.1+dfsg-1build4) [universe]
Geospatial Data Abstraction Library - Data files
gdis (0.90-6build1) [universe]
molecular and crystal model viewer
gdis-data (0.90-6build1) [universe]
molecular and crystal model viewer (data files)
gdl-astrolib (2021.12.26+dfsg-1) [universe]
Low-level astronomy software for GDL
gdl-coyote (2019.08.19-1) [universe]
GDL library from D. Fannings IDL courses
gdl-mpfit (1.85+2017.01.03-4) [universe]
Robust non-linear least squares curve fitting for GDL
gdpc (2.2.5-15) [universe]
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-15) [universe]
example files for the gdpc program
gelemental (2.0.1-1) [universe]
Periodic Table viewer
gemma (0.98.5+dfsg-1build1) [universe]
Genome-wide Efficient Mixed Model Association
gemmi (0.5.3+ds-2) [universe]
library for structural biology - executable
genometester (4.0+git20200511.91cecb5+dfsg-1) [universe]
toolkit for performing set operations on k-mer lists
genomethreader (1.7.3+dfsg-6) [universe]
software tool to compute gene structure predictions
genometools (1.6.2+ds-2) [universe]
versatile genome analysis toolkit
genometools-common (1.6.2+ds-2) [universe]
shared data files for GenomeTools
gentle (1.9+cvs20100605+dfsg1-9) [multiverse]
suite to plan genetic cloning
geographiclib-tools (1.52-1) [universe]
C++ library to solve some geodesic problems -- tools
geotiff-bin (1.7.0-2build1) [universe]
GeoTIFF (geografic enabled TIFF) library -- tools
getdata (0.2-4) [universe]
management of external databases
gff2aplot (2.0-14) [universe]
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98l-6) [universe]
produces PostScript graphical output from GFF-files
gffread (0.12.7-2build1) [universe]
GFF/GTF format conversions, region filtering, FASTA sequence extraction
gfsview (20121130+dfsg-7) [universe]
graphical viewer for Gerris simulation files
gfsview-batch (20121130+dfsg-7) [universe]
batch-version of viewer for Gerris simulation files
gftl-dev (1.3.0+is-really-1.2.7-1) [universe]
Containers and iterators for Fortran
gftl-shared-dev (1.0.7-2) [universe]
Common gFTL containers of Fortran intrinsic types
ggd-utils (1.0.0+ds-1) [universe]
programs for use in ggd
ghkl (5.0.0.2875-1) [universe]
diffractometer computation control application
ghmm (0.9~rc3-4) [universe]
General Hidden-Markov-Model library - tools
ginga (3.3.0-1) [universe]
Astronomical image viewer
gjh-asl-json (0.0+git20210628.867c5da-1) [universe]
gjh solver, like solver from AMPL Library
glam2 (1064-9) [universe]
gapped protein motifs from unaligned sequences
glueviz (1.0.1+dfsg-2) [universe]
Linked data visualization
gmap (2021-12-17+ds-1) [universe]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (6.3.0+dfsg-2build1) [universe]
Generic Mapping Tools
gmt-common (6.3.0+dfsg-2build1) [universe]
Generic Mapping Tools - Architecture-independent files
gmt-dcw (2.1.0-1) [universe]
Digital Chart of the World (DCW) for GMT
gmt-gshhg (2.3.7-5) [universe]
Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
gmt-gshhg-full (2.3.7-5) [universe]
Full resolution coastlines for the Generic Mapping Tools
gmt-gshhg-high (2.3.7-5) [universe]
High resolution coastlines for the Generic Mapping Tools
gmt-gshhg-low (2.3.7-5) [universe]
Low resolution coastlines for the Generic Mapping Tools
gnuastro (0.16.1-1build1) [universe]
GNU Astronomy Utilities programs
goby-java (3.3.1+dfsg2-7) [universe]
next-generation sequencing data and results analysis tool
golang-github-brentp-gsort-dev (0.1.4-3) [universe]
library package for gsort
golang-github-gogetdata-ggd-utils-dev (1.0.0+ds-1) [universe]
library for use in ggd
gpaw (22.1.0-1build1) [universe]
DFT and beyond within the projector-augmented wave method
gpaw-data (0.9.20000-2) [universe]
gpaw datasets/setups
gperiodic (3.0.3-1) [universe]
periodic table application
gpx (2.6.8-1) [universe]
Gcode to x3g conversion post processor
grabix (0.1.7-3) [universe]
wee tool for random access into BGZF files
grads (3:2.2.1-4build1) [universe]
Grid Analysis and Display System for earth science data
graphlan (1.1.3-4) [universe]
circular representations of taxonomic and phylogenetic trees
grass (7.8.7-1) [universe]
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (7.8.7-1) [universe]
GRASS GIS core components
grass-doc (7.8.7-1) [universe]
GRASS GIS user documentation
grass-gui (7.8.7-1) [universe]
GRASS GIS graphical user interfaces
gravit (0.5.1+dfsg-5) [universe]
visually stunning gravity simulator
gravit-data (0.5.1+dfsg-5) [universe]
data files for Gravit
gri (2.12.27-1build1) [universe] [ports]
a language for scientific illustration
grinder (0.5.4-6) [universe]
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (2021.4-2) [universe]
Molecular dynamics simulator, with building and analysis tools
gromacs-data (2021.4-2) [universe]
GROMACS molecular dynamics sim, data and documentation
gromacs-mpi (2021.4-2) [universe]
Molecular dynamics sim, binaries for MPI parallelization
gsort (0.1.4-3) [universe]
sort genomic data
gubbins (2.4.1-5) [universe]
phylogenetic analysis of genome sequences
gvb (1.4-1.1) [universe]
visual simulator of 1 and 2-dimensional vibrations
gwama (2.2.2+dfsg-5) [universe]
Genome-Wide Association Meta Analysis
gwyddion (2.60-2) [universe]
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.60-2) [universe]
architecture-independent files for Gwyddion SPM analysis tool
gyoto (1.4.4-7build1) [universe]
General relativistic geodesic integration and ray-tracing
gyoto-bin (1.4.4-7build1) [universe]
General relativistic ray-tracing command-line interface
h5utils (1.13.1-4build1) [universe]
HDF5 files visualization tools
harminv (1.4.1-3) [universe]
extraction of complex frequencies and amplitudes from time series
harvest-tools (1.3-7build1) [universe]
archiving and postprocessing for reference-compressed genomic multi-alignments
hdf-compass (0.7~b8-3) [universe]
viewer for HDF5 and related formats
hdf5-helpers (1.10.7+repack-4ubuntu2) [universe]
HDF5 - Helper tools
hdf5-tools (1.10.7+repack-4ubuntu2) [universe]
HDF5 - Runtime tools
herisvm (0.9.0-2) [universe]
machine learning tools for classification algorithms
heudiconv (0.10.0-1) [universe]
DICOM converter with support for structure heuristics
hfst (3.15.4-2) [universe]
Helsinki Finite-State Transducer Technology
hfst-ospell (0.5.2-1build3)
Spell checker library and tool based on HFST
hhsuite (3.3.0+ds-6) [universe]
sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data (3.3.0+ds-6) [universe]
sensitive protein sequence searching based on HMM-HMM alignment (data)
hilive (2.0a-3build3) [universe]
realtime alignment of Illumina reads
hinge (0.5.0-7) [universe]
long read genome assembler based on hinging
hisat2 (2.2.1-3) [universe]
graph-based alignment of short nucleotide reads to many genomes
hmmer (3.3.2+dfsg-1) [universe]
profile hidden Markov models for protein sequence analysis
hmmer2 (2.3.2+dfsg-7) [universe]
profile hidden Markov models for protein sequence analysis
hodie (1.5.0-1) [universe]
prints the date in Latin
horae (071~svn537+ds1-1) [multiverse]
interactive graphical processing and analysis of EXAFS data
hpcc (1.5.0-2.1) [universe]
HPC Challenge benchmark
hyphy-common (2.5.36+dfsg-1) [universe]
Hypothesis testing using Phylogenies (common files)
hyphy-mpi (2.5.36+dfsg-1) [universe]
Hypothesis testing using Phylogenies (MPI version)
hyphy-pt (2.5.36+dfsg-1) [universe]
Hypothesis testing using Phylogenies (pthreads version)
idba (1.1.3-7) [universe]
iterative De Bruijn Graph short read assemblers
idba-extra (1.1.3-7) [universe]
iterative De Bruijn Graph short read assemblers (extra tools)
idseq-bench (0.0~git20210602.27fb6dc-1) [universe]
Benchmark generator for the IDseq Portal
ifeffit (2:1.2.11d-12) [multiverse]
Interactive XAFS analysis program
igdiscover (0.11-3) [universe]
analyzes antibody repertoires to find new V genes
ignition-common-cli (4.5.0+ds-1) [universe]
Collection of useful code used by robotics apps - CLI tools
ignition-launch-cli (5.0.0+ds-0ubuntu1) [universe]
Ignition Robotics Launch Library - Launch cli
ignition-transport-cli (11.0.0+ds-3) [universe]
Ignition Robotics transport Library - CLI tools
igor (1.4.0+dfsg-3build1) [universe]
infers V(D)J recombination processes from sequencing data
igv (2.12.0+dfsg-1) [multiverse]
Integrative Genomics Viewer
iitii (0.0+git20191030.85209e0-2) [universe]
Implicit Interval Tree with Interpolation Index
illustrate (0.0+git20200923.217db48-2) [universe]
cartoonish representations of large biological molecules
imagej (1.53o-1) [universe]
Image processing program with a focus on microscopy images
imview (1.1.9h-3) [universe]
Image viewing and analysis application
indelible (1.03-5) [universe]
powerful and flexible simulator of biological evolution
indi-aagcloudwatcher-ng (1.6+20220128183230-1) [universe]
INDI driver for the AAG Cloud Watcher
indi-aok (1.1+20220129131520-1) [universe]
INDI driver for AOK Skywalker
indi-apogee (1.9+20220129131520-1) [universe]
INDI driver for Apogee CCDs and Filter Wheels
indi-armadillo-platypus (1.0+20220128183230-1) [universe]
INDI driver for Lunatico Astronomia Armadillo and Platypus
indi-asi (2.0-3) [multiverse]
INDI Driver for ZWO Optics ASI cameras
indi-astrolink4 (0.1+20220128183230-1) [universe]
INDI driver for Astrolink 4.0 devices
indi-astromechfoc (0.2+20220128183230-1) [universe]
INDI driver for Astromechanics Canon Lens Controller
indi-avalon (1.12+20220128183230-1) [universe]
INDI driver for Avalon Instruments mounts
indi-beefocus (0.1+20220128183230-1) [universe]
INDI driver for Bee Focus
indi-bresserexos2 (1.0+20220129131520-1) [universe]
INDI driver for Exos II GoTo Telescope Mount
indi-dreamfocuser (2.1+20220129131520-1) [universe]
INDI driver for DeamFocuser focuser
indi-dsi (0.4+20220129131520-1) [universe]
INDI driver for Meade DSI Pro I/II/III
indi-eqmod (1.0+20220129131520-1) [universe]
INDI EQMod Driver
indi-ffmv (0.3+20220129131520-1) [universe]
INDI driver for Point Grey Firefly MV cameras
indi-fishcamp (1.1-1) [multiverse]
INDI driver for Fishcamp Engineering CCD
indi-fli (1.5-2) [universe]
INDI driver for FLI CCD & Focuser
indi-gige (0.1+20220129131520-1) [universe]
INDI driver for GigE machine vision cameras
indi-gphoto (3.0+20220129131520-1) [universe]
INDI driver for GPhoto (DSLR) Cameras
indi-gpsd (0.5+20220129131520-1) [universe]
INDI driver for gpsd GPS daemon
indi-gpsnmea (0.2+20220129131520-1) [universe]
INDI driver for GPS NMEA streams
indi-limesdr (1.4+20220129131520-1) [universe]
INDI driver for LimeSDR (LMS7) Receiver
indi-maxdomeii (1.3-2) [universe]
INDI driver for MaxDome II dome control system
indi-mgen (0.1+20220129131520-1) [universe]
INDI driver for Lacerta MGen Autoguider
indi-mi (1.8-1) [multiverse]
INDI driver for cameras made by Moravian Instruments
indi-nexdome (1.5+20220129131520-1) [universe]
INDI driver for NexDome
indi-nightscape (1.0.6+20220129131520-1) [universe]
INDI driver for Celestron Nightscape 8300
indi-orion-ssg3 (0.1+20220129131520-1) [universe]
INDI Driver for Orion StarShoot G3 and G4 cameras
indi-playerone (0.4+20220129131520-1) [multiverse]
INDI driver for cameras made by Playerone
indi-rtklib (1.0+20220129131520-1) [universe]
INDI driver for precise positioning with RTKLIB
indi-shelyak (1.0+20220129131520-1) [universe]
INDI driver for Shelyak and Alpy Spectrograph
indi-spectracyber (1.3+20220129131520-1) [universe]
INDI driver for hydrogen line spectrometer
indi-starbook (0.8+20220129131520-1) [universe]
INDI driver for Vixen Starbook telescope controllers
indi-starbook-ten (0.1-2) [universe]
INDI driver for Vixen Starbook Ten telescope controllers
indi-sx (1.15+20220129131520-1) [universe]
INDI driver for Starlight Xpress CCD and Filter Wheel
indi-talon6 (2.0+20220129131520-1) [universe]
INDI driver for Talon6 Roll Off Roof
indi-webcam (1.0+20220129131520-1) [universe]
INDI Driver for web cameras
indigo-utils (1.2.3-3.1) [universe]
Organic Chemistry Toolkit Utilities
infernal (1.1.4-1) [universe]
inference of RNA secondary structural alignments
inhomog (0.1.9.2-1build2) [universe]
kinematical backreaction and average scale factor evolution
inkscape-speleo (1.8-4) [universe]
Inkscape plugin to help draw surveys
inkscape-survex-export (2.0-1) [universe]
Inkscape plugin to digitise printed surveys
insilicoseq (1.5.4-2) [universe]
sequencing simulator producing realistic Illumina reads
ipig (0.0.r5-4) [universe]
integrating PSMs into genome browser visualisations
iqtree (2.0.7+dfsg-1) [universe]
efficient phylogenetic software by maximum likelihood
iraf (2.17-1) [universe]
Image Reduction and Analysis Facility
iraf-dev (2.17-1) [universe]
Image Reduction and Analysis Facility (development files)
iraf-fitsutil (2018.07.06-4build1) [universe]
FITS utilities for IRAF
iraf-mscred (5.05+2018.07.09-1build3) [universe]
CCD mosaic reduction package for IRAF
iraf-noao (2.17-1) [universe]
IRAF NOAO data reduction package
iraf-noao-dev (2.17-1) [universe]
IRAF NOAO data reduction package (development files)
iraf-rvsao (2.8.4-1) [universe]
IRAF package to obtain radial velocities from spectra
iraf-sptable (1.0~pre20180612-2build1) [universe]
IRAF package for Tabular Spectra
iraf-wcstools (3.9.6-1) [universe]
Handle the WCS of a FITS image (IRAF package)
ismrmrd-schema (1.4.2.1-6) [universe]
schema for ISMRMRD
ismrmrd-tools (1.4.2.1-6) [universe]
command-line tools for ISMRMRD
iso2mesh-demos (1.9.6+ds-7) [universe]
sample files and demo scripts for Iso2Mesh toolbox
iso2mesh-tools (1.9.6+ds-7) [universe]
3D mesh generation and repairing utilities
iva (1.0.11+ds-1) [universe]
iterative virus sequence assembler
ivar (1.3.1+dfsg-4) [universe]
functions broadly useful for viral amplicon-based sequencing
jaligner (1.0+dfsg-8) [universe]
Smith-Waterman algorithm with Gotoh's improvement
jalview (2.11.1.4+dfsg-3) [universe]
multiple alignment editor
jblas (1.2.4-3) [universe]
fast linear algebra library for Java
jellyfish (2.3.0-12ubuntu2) [universe]
count k-mers in DNA sequences
jellyfish-examples (2.3.0-12ubuntu2) [universe]
count k-mers in DNA sequences (examples for testing)
jellyfish1 (1.1.11-6) [universe]
count k-mers in DNA sequences
jemboss (6.6.0+dfsg-11ubuntu1) [universe]
graphical user interface to EMBOSS
jmodeltest (2.1.10+dfsg-11) [universe]
HPC selection of models of nucleotide substitution
jmol (14.32.3+dfsg1-1) [universe]
Molecular Viewer
jnifti-demos (0.6-2) [universe]
sample files and demo scripts for JNIfTI toolbox
jsamp (1.3.7-1) [universe]
Java Simple Application Messaging Protocol tool for VO
jube (2.4.2-1) [universe]
JUBE Benchmarking Environment
jupyter-notebook (6.4.8-1ubuntu0.1) [universe] [security]
Jupyter interactive notebook
kalign (1:3.3.1-1) [universe]
Global and progressive multiple sequence alignment
kallisto (0.46.2+dfsg-3) [universe]
near-optimal RNA-Seq quantification
kallisto-examples (0.46.2+dfsg-3) [universe]
near-optimal RNA-Seq quantification (example data)
kalzium (4:21.12.3-0ubuntu1) [universe]
periodic table and chemistry tools
kalzium-data (4:21.12.3-0ubuntu1) [universe]
data files for Kalzium
kaptive (2.0.0-1) [universe]
obtain information about K and O types for Klebsiella genome assemblies
kaptive-data (2.0.0-1) [universe]
reference data for kaptive for Klebsiella genome assemblies
kaptive-example (2.0.0-1) [universe]
example data for kaptive for Klebsiella genome assemblies
khmer-common (2.1.2+dfsg-10) [universe]
common files for the khmer project tools
kineticstools (0.6.1+git20210811.276ca9c+dfsg-1build1) [universe]
detection of DNA modifications
kineticstools-data (0.6.1+git20210811.276ca9c+dfsg-1build1) [universe]
detection of DNA modifications -- data files
king-probe (02.21-1) [universe]
Evaluate and visualize protein interatomic packing
kissplice (2.5.5+dfsg-1) [universe]
Detection of various kinds of polymorphisms in RNA-seq data
kleborate (2.2.0-1) [universe]
tool to screen Klebsiella genome assemblies
kleborate-examples (2.2.0-1) [universe]
tool to screen Klebsiella genome assemblies (example data)
klustakwik (3.0.2+ds-2) [universe]
automatic sorting of the samples (spikes) into clusters
kma (1.3.28-1) [universe]
mapping genomic sequences to raw reads directly against redundant databases
kmc (3.2.1+dfsg-1) [universe]
count kmers in genomic sequences
kmer (0~20150903+r2013-8build2) [universe]
suite of tools for DNA sequence analysis
kmer-examples (0~20150903+r2013-8build2) [universe]
sample data for kmer suite of tools for DNA sequence analysis
kmerresistance (2.2.0-3ubuntu1) [universe]
correlates mapped genes with the predicted species of WGS samples
konclude (0.7.0+1138~dfsg-1) [universe]
tableau-based description logic reasoner for the semantic web
kraken (1.1.1-3) [universe]
assigning taxonomic labels to short DNA sequences
kraken2 (2.1.2-1) [universe]
taxonomic classification system using exact k-mer matches
kst (2.0.8-5build1) [universe]
scientific data plotting tool
kstars (5:3.5.7-1) [universe]
desktop planetarium, observation planning and telescope control
kstars-data (5:3.5.7-1) [universe]
data files for KStars desktop planetarium
kstars-data-extra-tycho2 (1.1r1-9.1) [universe]
Tycho-2 star catalog for KStars
lagan (2.0-6) [universe]
highly parametrizable pairwise global genome sequence aligner
lamarc (2.1.10.1+dfsg-6) [universe]
Likelihood Analysis with Metropolis Algorithm using Random Coalescence
lambda-align (1.0.3-6) [universe]
Local Aligner for Massive Biological DatA
lambda-align2 (2.0.0-9) [universe]
Local Aligner for Massive Biological DatA - v2
lammps (20220106.git7586adbb6a+ds1-2) [universe]
Molecular Dynamics Simulator
last-align (1260-1) [universe]
genome-scale comparison of biological sequences
lastz (1.04.15-2) [universe]
pairwise aligning DNA sequences
lastz-examples (1.04.15-2) [universe]
pairwise aligning DNA sequences (examples and test scripts)
leaff (0~20150903+r2013-8build2) [universe]
biological sequence library utilities and applications
lefse (1.1.2-1) [universe]
determine features of organisms, clades, taxonomic units, genes
libadios-bin (1.13.1-30build2) [universe]
ADIOS Adaptable IO system for simulations - binaries
libadios-examples (1.13.1-30build2) [universe]
Examples for the ADIOS Adaptable IO system
libarb (6.0.6-5) [multiverse]
phylogenetic sequence analysis suite - libraries
libatlas-ecmwf-utils (0.27.0-1) [universe]
Numerical weather prediction and climate modelling library - utilities
libball1.5-data (1.5.0+git20180813.37fc53c-10build1) [universe]
Biochemical Algorithms Library (data files)
libbio-db-hts-perl (3.01-3build2) [universe]
Perl interface to the HTS library
libbio-tools-phylo-paml-perl (1.7.3-3) [universe]
Bioperl interface to the PAML suite
libbio-tools-run-alignment-clustalw-perl (1.7.4-2) [universe]
Bioperl interface to Clustal W
libbio-tools-run-alignment-tcoffee-perl (1.7.4-2) [universe]
Bioperl interface to T-Coffee
libbiojava-java (1:1.7.1-9) [universe]
Java API to biological data and applications (default version)
libbiojava-java-demos (1:1.7.1-9) [universe]
Example programs for BioJava
libbiojava1.7-java (1:1.7.1-9) [universe]
Java API to biological data and applications (version 1.7)
libcassie1v5 (1.0.9-3build1) [universe]
library implementating search algorithms
libcg3-1 (1.3.2-1build2) [universe]
Runtime for CG-3
libclhep2.1v5 (2.1.4.1+dfsg-1build1) [universe]
CLHEP: A Class Library for High Energy Physics
libdbcsr-dev (2.1.0-1) [universe] [ports]
Distributed Block Compressed Sparse Row matrix library
libdivsufsort3 (2.0.1-5) [universe]
fast suffix array construction
libdlpack-dev (0.6-1) [universe]
Open In Memory Tensor Structure
libdyssol1.0 (1.0.2+ds2-1) [universe]
Tool for dynamic flowsheet simulation. Shared libraries
libeccodes-data (2.24.2-1) [universe]
GRIB and BUFR enecoding/encoding software library - data
libeckit-utils (1.18.7-1) [universe]
C++ toolkit for ECMWF tools and applications - development files
libej0 (4.8.8+repack-2) [universe]
hardware & software framework for developing science experiments
libfaiss-dev (1.7.2-5) [universe]
efficient similarity search and clustering of dense vectors
libfckit-utils (0.9.5-1) [universe]
Library Fortran toolkit for interoperating Fortran with C/C++
libgenometools0 (1.6.2+ds-2) [universe]
versatile genome analysis library
libgfsgl0 (20121130+dfsg-7) [universe]
graphical viewer for Gerris simulation files. Shared library
libgiac0 (1.7.0.39+dfsg2-1build2) [universe]
Computer Algebra System C++ library
libgoby-io-java (3.3.1+dfsg2-7) [universe]
IO API for goby
libhdf5-jni (1.10.7+repack-4ubuntu2) [universe]
native library used by libhdf5-java
libideep-dev (0.0~git20210319.8307da3-2) [universe]
Intel's mkldnn/dnnl wrapper for pytorch
libinchi-bin (1.03+dfsg-4) [universe]
International Chemical Identifier (InChI) algorithm (executable)
libjgrapht-java (1.5.1-3) [universe]
Java library of graph theory data structures and algorithms
libjgrapht-java
virtual package provided by libjgrapht0.8-java
liblammps-dev (20220106.git7586adbb6a+ds1-2) [universe]
Molecular Dynamics Simulator (dev files)
liblammps0 (20220106.git7586adbb6a+ds1-2) [universe]
Molecular Dynamics Simulator (shared library)
liblemon-utils (1.3.1+dfsg-5) [universe]
Library for Efficient Modeling and Optimization in Networks (utilities)
libliggghts3 (3.8.0+repack1-9build1) [universe]
Open Source DEM Particle Simulation Software. Shared library
liblinear-tools (2.3.0+dfsg-5) [universe]
Standalone applications for LIBLINEAR
liblorene-debian1 (0.0.0~cvs20161116+dfsg-1ubuntu9) [universe]
liblorene shared library
liblorene-export-debian0 (0.0.0~cvs20161116+dfsg-1ubuntu9) [universe]
liblorene_export shared library
liblorenef77-debian1 (0.0.0~cvs20161116+dfsg-1ubuntu9) [universe]
liblorenef77 shared library
libmcpl-dev (1.3.2-3) [universe]
Monte Carlo Particle Lists - development files
libmcpl1 (1.3.2-3) [universe]
Monte Carlo Particle Lists - library
libmstoolkit-tools (82-7) [universe]
libraries for manipulating mass spectrometry data - tools
libncarg-bin (6.6.2-10build2) [universe]
NCAR command-language library - development tools
libncarg-data (6.6.2-10build2) [universe]
NCAR command-language library - Data
libngram-tools (1.3.2-3build1) [universe]
OpenGRM n-gram Language Modeling toolkit
libocas-tools (0.97+dfsg-6) [universe]
Standalone applications implementing the OCAS solver
libonnx-dev (1.7.0+dfsg-3ubuntu2) [universe]
Open Neural Network Exchange (ONNX) (dev)
libonnx-testdata (1.7.0+dfsg-3ubuntu2) [universe]
Open Neural Network Exchange (ONNX) (test data)
libonnx1 (1.7.0+dfsg-3ubuntu2) [universe]
Open Neural Network Exchange (ONNX) (libs)
libonnxifi (1.7.0+dfsg-3ubuntu2) [universe]
Open Neural Network Exchange (ONNX) (ONNXIFI)
libopenfoam (1912.200626-1) [universe]
Open source toolbox for Computational Fluid Dynamics (CFD) - libraries
libopm-simulators-bin (2021.10-4ubuntu1) [universe]
Parallel porous media / reservoir simulators -- applications
libopm-upscaling-bin (2021.10-4) [universe]
Porous media upscaling tools -- applications
liboscar4-java (5.1.2+dfsg-1) [universe]
automated annotation of chemistry in scientific articles
libphitsmcpl1 (1.3.2-3) [universe]
Monte Carlo Particle Lists - PHITS library
libpluto-jpl-eph-dev (0.0~git20180228-1.1build1) [universe]
development files to interact with JPL ephemeres data
libpluto-lunar-dev (0.0~git20180825.e34c1d1-1build1) [universe]
development files for astronomical Lunar library
libpwiz-tools (3.0.18342-4build1) [universe]
ProteoWizard command line tools
libqgis-customwidgets (3.22.4+dfsg-3build1) [universe]
QGIS custom widgets for Qt Designer
librasterlite2-1 (1.1.0~beta1-2build1) [universe]
library for huge raster coverages using a SpatiaLite DBMS
librsl1 (1.43-1.2build1) [universe]
TRMM Radar Software Library
libsilo-bin (4.11-2build1) [universe]
Utilities to manipulate libsilo files
libsqlite3-mod-virtualpg (2.0.1-1) [universe]
Loadable dynamic extension to both SQLite and SpatiaLite
libsquizz (0.99d+dfsg-3) [universe]
Conversion libs used by squizz genetic sequence converter
libssm-bin (1.4.0-2) [universe]
macromolecular superposition library - binaries
libssu-tools (0.10.0-3build1) [universe]
high-performance phylogenetic diversity calculations (binaries)
libsswmcpl1 (1.3.2-3) [universe]
Monte Carlo Particle Lists - SSW library
libstxxl1v5 (1.4.1-3build1) [universe]
C++ Standard Template Library for extra large datasets
libtorch-test (1.8.1-4) [universe]
Tensors and Dynamic neural networks in Python (Test Binaries)
libuhd4.1.0-dpdk-tests (4.1.0.5-3) [universe]
universal hardware driver for Ettus Research products - DPDK tests
libvcflib-tools (1.0.3+dfsg-1) [universe]
C++ library for parsing and manipulating VCF files (tools)
libvdjtools-java (1.2.1+git20190311-6) [multiverse]
Java library of vdjtools
libwannier90-dev (3.1.0+ds-7) [universe]
Maximally Localized Wannier Functions - development library
libxy-bin (1.6-1) [universe]
xylib - utilities
libyade (2022.01a-7) [universe]
Platform for discrete element modeling. Libraries
liggghts (3.8.0+repack1-9build1) [universe]
Open Source DEM Particle Simulation Software.
lighter (1.1.2-6) [universe]
fast and memory-efficient sequencing error corrector
litl-tools (0.1.9-12build1) [universe]
Lightweight Trace Library - tools
logol (1.7.9+dfsg-1build1) [universe]
Pattern matching tool using Logol language
logol-bin (1.7.9+dfsg-1build1) [universe]
Pattern matching tool using Logol language
loki (2.4.7.4-10) [universe]
MCMC linkage analysis on general pedigrees
loki-doc (2.4.7.4-10) [universe]
MCMC linkage analysis on general pedigrees (PS manual)
looptools (2.8-1build3) [universe]
Integral Evaluator of One-loop Feynman Diagram
lorene (0.0.0~cvs20161116+dfsg-1ubuntu9) [universe]
framework for numerical relativity
lorene-codes-src (0.0.0~cvs20161116+dfsg-1ubuntu9) [universe]
source files of LORENE-based codes
ltrsift (1.0.2-9build1) [universe]
postprocessing and classification of LTR retrotransposons
lttoolbox-dev (3.5.4-1build1) [universe]
Development tools and library for lttoolbox
lucy (1.20-3) [universe]
DNA sequence quality and vector trimming tool
lumpy-sv (0.3.1+dfsg-6) [universe]
general probabilistic framework for structural variant discovery
lumpy-sv-examples (0.3.1+dfsg-6) [universe]
general probabilistic framework for structural variant discovery (data)
lutefisk (1.0.7+dfsg-7) [universe]
de novo interpretation of peptide CID spectra
lxi-tools (2.1-1) [universe]
LAN eXtensions for Instrumentation (LXI) software interface
macs (2.2.7.1-5ubuntu1) [universe]
Model-based Analysis of ChIP-Seq on short reads sequencers
macsyfinder (2.0~rc4-2) [universe]
detection of macromolecular systems in protein datasets
maffilter (1.3.1+dfsg-3) [universe]
process genome alignment in the Multiple Alignment Format
maffilter-examples (1.3.1+dfsg-3) [universe]
process genome alignment in the Multiple Alignment Format (example data)
mafft (7.490-1) [universe]
Multiple alignment program for amino acid or nucleotide sequences
malt (0.5.2-2) [universe]
sequence alignment and analysis tool to process sequencing data
mandelbrot-solver (3.2.1-5) [universe]
Solver for Mandelbrot polynomials based on MPSolve
mapdamage (2.2.1+dfsg-2) [universe]
tracking and quantifying damage patterns in ancient DNA sequences
mapsembler2 (2.2.4+dfsg1-4) [universe]
bioinformatics targeted assembly software
maq (0.7.1-9) [universe]
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-10) [universe]
graphical read alignment viewer for short gene sequences
mash (2.3+dfsg-1build2) [universe]
fast genome and metagenome distance estimation using MinHash
massxpert (6.0.3-1) [universe]
polymer chemistry modelling and mass spectrometry data simulation (runtime)
massxpert-data (6.0.3-1) [universe]
polymer chemistry modelling and mass spectrometry data simulation (data)
matlab-brain2mesh (0.7.9-2) [multiverse]
automated brain tetrahedral mesh generation toolbox for MATLAB
matlab-gdf (0.1.3-11) [multiverse]
IO library for the GDF -- Matlab interface
matlab-iso2mesh (1.9.6+ds-7) [multiverse]
3D surface and volumetric mesh generator for MATLAB
matlab-jnifti (0.6-2) [multiverse]
fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter for MATLAB
matlab-jsonlab (2.0-1.1) [multiverse]
native JSON/UBJSON/MassagePack encoder/decoder for MATLAB
matlab-zmat (0.9.8+ds-6) [multiverse]
in-memory data compression for MATLAB
maude (3.1-2) [universe]
high-performance logical framework
mauve-aligner (2.4.0+4736-4) [universe]
multiple genome alignment
mayavi2 (4.7.1-3ubuntu1) [universe]
scientific visualization package for 2-D and 3-D data
mbpoll (1.4.11+dfsg-2) [universe]
command line utility to communicate with ModBus slave (RTU or TCP)
mbt (3.6-3) [universe]
memory-based tagger-generator and tagger
mbtserver (0.14-2) [universe]
Server extensions for the MBT tagger
mcaller (1.0.3+git20210624.b415090-1) [universe]
find methylation in nanopore reads
mcpl (1.3.2-3) [universe]
Monte Carlo Particle Lists - libraries and tools
mecat2 (0.0+git20200428.f54c542+ds-3) [universe]
ultra-fast and accurate de novo assembly tools for SMRT reads
meep (1.17.1-1build1) [universe]
software package for FDTD simulation
meep-mpi-default (1.17.1-2build1) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.17.1-2build1) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
megahit (1.2.9-3) [universe]
ultra-fast and memory-efficient meta-genome assembler
megan-ce (6.21.1+dfsg-2) [universe]
interactive tool to explore and analyse microbiome sequencing data
melting (5.2.0-2) [universe]
compute the melting temperature of nucleic acid duplex
merkaartor (0.19.0+ds-2build2) [universe]
map editor for OpenStreetMap.org
meryl (0~20150903+r2013-8build2) [universe]
in- and out-of-core kmer counting and utilities
metabat (2.15-3) [universe]
robust statistical framework for reconstructing genomes from metagenomic data
metaphlan2 (3.0.14-1) [universe]
Metagenomic Phylogenetic Analysis
metaphlan2-data (2.6.0+ds-4) [universe]
data package for Metagenomic Phylogenetic Analysis
metastudent (2.0.1-9) [universe]
predictor of Gene Ontology terms from protein sequence
metastudent-data (2.0.1-8) [universe]
predictor of Gene Ontology terms from protein sequence - data files
metastudent-data-2 (1.0.0-6) [universe]
predictor of Gene Ontology terms from protein sequence - data #2
metview (5.14.1-1) [universe]
Interactive data visualization and analysis environment,
metview-data (5.14.1-1) [universe]
Data needed for the Metview data analysis environment
mhap (2.1.3+dfsg-3) [universe]
locality-sensitive hashing to detect long-read overlaps
mia-doctools (2.4.7-8ubuntu1) [universe]
Helper scripts for run-time document creation
mia-tools (2.4.7-8ubuntu1) [universe]
Command line tools for gray scale image processing
mia-viewit (1.0.5-3) [universe]
Viewer program for 3D data sets created by using MIA
mialmpick (0.2.15-2) [universe]
Tools for landmark picking in 3D volume data sets
microbegps (1.0.0-5) [universe]
explorative taxonomic profiling tool for metagenomic data
microbiomeutil (20101212+dfsg1-5) [universe]
Microbiome Analysis Utilities
microbiomeutil-data (20101212+dfsg1-5) [universe]
Reference 16S sequences and NAST-alignments used by microbiomeutil tools
microhope (4.8.8+repack-2) [universe]
hardware & software framework to learn microcontrollers
minc-tools (2.3.00+dfsg-8) [universe]
MNI medical image format tools
mindthegap (2.2.3-4) [universe]
performs detection and assembly of DNA insertion variants in NGS read datasets
mindthegap-examples (2.2.3-4) [universe]
optional scripts and example resources for mindthegap
minexpert2 (8.2.0-1) [universe]
MS^n mass spectrometric data visualization and mining (runtime)
minia (3.2.6-1) [universe]
short-read biological sequence assembler
miniasm (0.3+dfsg-3) [universe]
ultrafast de novo assembler for long noisy DNA sequencing reads
minimac4 (1.0.2-4) [universe]
Fast Imputation Based on State Space Reduction HMM
minimap (0.2-6) [universe]
tool for approximate mapping of long biosequences such as DNA reads
minimap2 (2.24+dfsg-2) [universe]
versatile pairwise aligner for genomic and spliced nucleotide sequences
minisat (1:2.2.1-5build2) [universe]
Fast and lightweight SAT solver
minisat+ (1.0-4build1) [universe]
solver for pseudo-Boolean constraints
minisat2 (1:2.2.1-5build2) [universe]
Transitional package for minisat
minisat2
virtual package provided by minisat
mipe (1.1-9) [universe]
Tools to store PCR-derived data
mira-assembler (4.9.6-5build2) [universe]
Whole Genome Shotgun and EST Sequence Assembler
mira-rfam-12s-rrna (4.9.6-5build2) [universe]
extract of RFAM 12 rRNA database
mirtop (0.4.24-1) [universe]
annotate miRNAs with a standard mirna/isomir naming
missfits (2.8.0-5) [universe]
Basic maintenance and packaging tasks on FITS files
mitools (2.0.5-2) [universe]
view, convert and perform basic maths with medical image datasets
mlpack-bin (3.4.2-5ubuntu1) [universe]
intuitive, fast, scalable C++ machine learning library (binaries)
mlv-smile (1.47-8) [universe]
Find statistically significant patterns in sequences
mmb (3.5+dfsg-4ubuntu1) [universe]
model the structure and dynamics of macromolecules
mmb-common (3.5+dfsg-4ubuntu1) [universe]
model the structure and dynamics of macromolecules (common files)
mmmulti (0.1-2) [universe]
memory backed multimap
mmseqs2 (13-45111+ds-2) [universe]
ultra fast and sensitive protein search and clustering
mmseqs2-examples (13-45111+ds-2) [universe]
optional resources for the mmseqs2 package
mocassin (2.02.73.2-1) [universe]
MOnte CArlo SimulationS of Ionised Nebulae
mocassin-benchmarks (2.02.73.2-1) [universe]
benchmarks for the photoionisation code MOCASSIN
mocassin-data (2.02.73.2-1) [universe]
atomic and optical data for the photoionisation code MOCASSIN
mocassin-examples (2.02.73.2-1) [universe]
Examples for the photoionisation code MOCASSIN
molequeue (0.9.0-1) [universe]
Desktop integration of high performance computing resources
montage (6.0+dfsg-7build5) [universe]
Toolkit for assembling FITS images into mosaics
montage-gridtools (6.0+dfsg-7build5) [universe]
Create files to run montage on the grid
mopac7-bin (1.15-6ubuntu4) [universe]
Semi-empirical Quantum Chemistry Library (binaries)
mothur (1.47.0-1) [universe]
sequence analysis suite for research on microbiota
mpb (1.11.1-4) [universe]
MIT Photonic-Bands
mpb-mpi (1.11.1-4) [universe]
MIT Photonic-Bands, parallel (mpich) version
mpb-scm (1.11.1-4) [universe]
MIT Photonic-Bands initialisation files
mpgrafic (0.3.19-1build1) [universe]
MPI version of N-body initial conditions grafic package
mpqc (2.3.1-21) [universe]
Massively Parallel Quantum Chemistry Program
mpqc-support (2.3.1-21) [universe]
Massively Parallel Quantum Chemistry Program (support tools)
mpsolve (3.2.1-5) [universe]
Multiprecision polynomial solver (command line version)
mptp (0.2.4-3build1) [universe]
single-locus species delimitation
mrbayes-mpi (3.2.7a-5) [universe]
Bayesian Inference of Phylogeny - mpi version
mriconvert (1:2.1.0-4build1) [universe]
medical image file conversion utility
mricron (1.2.20211006+dfsg-1) [universe]
magnetic resonance image conversion, viewing and analysis
mricron-data (1.2.20211006+dfsg-1) [universe]
data files for MRIcron
mrpt-apps (1:2.4.2+ds-2) [universe]
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-common (1:2.4.2+ds-2) [universe]
Mobile Robot Programming Toolkit - Example datasets and files
mrtrix3 (3.0.3-1) [universe]
diffusion-weighted MRI white matter tractography
mseed2sac (2.3+ds1-1) [universe]
Convert MiniSEED time series data to SAC
mssstest (3.0-7build1) [multiverse]
Normalisation of disease scores for patients with Multiple Sclerosis
msxpertsuite (5.8.9-1) [universe]
mass spectrometry software suite - metapackage
msxpertsuite-massxpert (5.8.9-1) [universe]
mass spectrometry software suite - massXpert
msxpertsuite-massxpert-data-doc (5.8.9-1) [universe]
mass spectrometry software suite - massXpert - data and doc
msxpertsuite-minexpert (5.8.9-1) [universe]
mass spectrometry software suite - mineXpert
msxpertsuite-minexpert-data-doc (5.8.9-1) [universe]
mass spectrometry software suite - mineXpert - data and doc
multiqc (1.12+dfsg-1) [universe]
output integration for RNA sequencing across tools and samples
mumax3 (3.10-2) [multiverse]
GPU-accelerated micromagnetic simulator
mummer (3.23+dfsg-7) [universe]
Efficient sequence alignment of full genomes
munipack (0.5.14-2) [universe]
Astronomical photometry software package
munipack-cli (0.5.14-2) [universe]
Command line interface of Munipack
munipack-core (0.5.14-2) [universe]
Core routines of Munipack
munipack-gui (0.5.14-2) [universe]
Graphical user interface of Munipack
murasaki (1.68.6-13build1) [universe]
homology detection tool across multiple large genomes
murasaki-common (1.68.6-13build1) [universe]
homology detection tool across multiple large genomes (common files)
murasaki-mpi (1.68.6-13build1) [universe]
homology detection tool across multiple large genomes (MPI-version)
muscle (1:3.8.1551-2build1) [universe]
Multiple alignment program of protein sequences
music-bin (1.1.16-1.1build4) [universe]
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.3-4) [universe]
multiple structural alignment of proteins
mustang-testdata (3.2.3-4) [universe]
multiple structural alignment of proteins, test data
nanolyse (1.2.0-3) [universe]
remove lambda phage reads from a fastq file
nanook (1.33+dfsg-4) [universe]
pre- and post-alignment analysis of nanopore sequencing data
nanook-examples (1.33+dfsg-4) [universe]
pre- and post-alignment analysis of nanopore sequencing data (examples)
nanopolish (0.13.3-2) [universe]
consensus caller for nanopore sequencing data
nanostat (1.4.0-3) [universe]
statistics on long biological sequences
nanosv (1.2.4+git20190409.c1ae30c-6) [universe]
structural variant caller for nanopore data
nast-ier (20101212+dfsg1-5) [universe]
NAST-based DNA alignment tool
nastran (0.1.95-2) [multiverse]
NASA Structural Analysis System
nautic (1.5-5) [universe]
computation of observer position in astro-navigation
ncbi-acc-download (0.2.8-1) [universe]
download genome files from NCBI by accession
ncbi-blast+ (2.12.0+ds-3build1) [universe]
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.12.0+ds-3build1) [universe]
NCBI Blast legacy call script
ncbi-cn3d (3.0.20170106+dfsg1-9) [universe]
3-dimensional viewer for biological molecules
ncbi-entrez-direct (14.6.20210224+dfsg-5ubuntu0.2 [amd64], 14.6.20210224+dfsg-5 [arm64, armhf, ppc64el, riscv64, s390x]) [universe] [security]
NCBI Entrez utilities on the command line
ncbi-epcr (2.3.12-1-9) [universe]
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20170106+dfsg1-9) [universe]
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-seg (0.0.20000620-6) [universe]
tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin (6.1.20170106+dfsg1-9) [universe]
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20170106+dfsg1-9) [universe]
NCBI libraries for biology applications (X-based utilities)
ncl-ncarg (6.6.2-10build2) [universe]
NCAR Command Language and NCAR graphics
ncl-tools (2.1.21+git20210811.b1213a7-1) [universe]
tools to deal with NEXUS files
ncoils (2002-9) [universe]
coiled coil secondary structure prediction
ncview (2.1.8+ds-4build1) [universe]
X11 visual browser for NetCDF format files
neat (2.3.2-2) [universe]
Nebular Empirical Analysis Tool
neobio (0.0.20030929-6) [universe]
computes alignments of amino acid and nucleotide sequences
netcdf-bin (1:4.8.1-1) [universe]
Programs for reading and writing NetCDF files
neurodebian (0.41.0) [universe]
neuroscience-oriented distribution - repository configuration
neurodebian-archive-keyring (0.41.0) [universe]
neuroscience-oriented distribution - GnuPG archive keys
neurodebian-desktop (0.41.0) [universe]
neuroscience-oriented distribution - desktop integration
neurodebian-dev (0.41.0) [universe]
neuroscience-oriented distribution - development tools
neurodebian-freeze (0.41.0) [universe]
nd_freeze tool to freeze APT sources to use snapshots
neurodebian-popularity-contest (0.41.0) [universe]
neuroscience-oriented distribution - popcon integration
neuron (7.6.3-1build6) [universe]
Simulation environment for computational models of neurons
neuron-dev (7.6.3-1build6) [universe]
Neuron simulation environment - Development files
nexus-tools (4.4.3-5) [universe]
NeXus scientific data file format - applications
ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2) [universe]
CoNvex Gap-cost alignMents for Long Reads
nifti2dicom (0.4.11-3) [universe]
convert 3D medical images to DICOM 2D series
nifti2dicom-data (0.4.11-3) [universe]
data files for nifti2dicom
njplot (2.4-9) [universe]
phylogenetic tree drawing program
norsnet (1.0.17-7) [universe]
tool to identify unstructured loops in proteins
norsp (1.0.6-7) [universe]
predictor of non-regular secondary structure
ntcard (1.2.2+dfsg-3) [universe]
Streaming algorithm to estimate cardinality in genomics datasets
nthash (2.2.0-2) [universe]
Methods to evaluate runtime and uniformity tests for hashing methods
numdiff (5.9.0-1) [universe]
Compare similar files with numeric fields
nutsqlite (2.0.6-3) [universe]
Dietary nutrition analysis software
nwchem (7.0.2-3) [universe]
High-performance computational chemistry software (default MPI)
nwchem-data (7.0.2-3) [universe]
High-performance computational chemistry software (data files)
nwchem-mpich (7.0.2-3) [universe]
High-performance computational chemistry software (MPICH build)
nwchem-openmpi (7.0.2-3) [universe]
High-performance computational chemistry software (OpenMPI build)
nxtrim (0.4.3+dfsg-2) [universe]
Optimized trimming of Illumina mate pair reads
oar-common (2.5.9-1) [universe]
OAR batch scheduler common package
oar-node (2.5.9-1) [universe]
OAR batch scheduler node package
oar-restful-api (2.5.9-1) [universe]
OAR web services
oar-server (2.5.9-1) [universe]
OAR batch scheduler server package
oar-server-mysql (2.5.9-1) [universe]
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.9-1) [universe]
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.9-1) [universe]
OAR batch scheduler user package
oar-user-mysql (2.5.9-1) [universe]
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.9-1) [universe]
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.9-1) [universe]
OAR batch scheduler visualization tool package
objcryst-fox (1.9.6.0-2.2) [universe]
Free Objects for Xtallography
occt-draw (7.5.1+dfsg1-2ubuntu1) [universe]
Open CASCADE Technology command interpreter and graphical test system
oce-draw (0.18.3-2) [universe]
OpenCASCADE Community Edition CAE platform shared library
octave-bart (0.7.00-2) [universe]
Octave bindings for BART
octave-biosig (2.3.3-1build2) [universe]
Octave bindings for BioSig library
octave-brain2mesh (0.7.9-2) [universe]
automated brain tetrahedral mesh generation toolbox for Octave
octave-gdf (0.1.3-11) [universe]
IO library for the GDF -- Octave interface
octave-iso2mesh (1.9.6+ds-7) [universe]
3D surface and volumetric mesh generator for Octave
octave-jnifti (0.6-2) [universe]
fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter
octave-jsonlab (2.0-1.1) [universe]
native JSON/UBJSON/MassagePack encoder/decoder for Octave
octave-psychtoolbox-3 (3.0.18.4.dfsg1-1) [universe]
toolbox for vision research -- Octave bindings
octave-zmat (0.9.8+ds-6) [universe]
in-memory data compression for Octave
octomap-tools (1.9.7+dfsg-3) [universe]
Tools for 3D occupancy grid mapping
octovis (1.9.7+dfsg-3) [universe]
Visualization tool for OctoMap
odil (0.12.1-5build1) [universe]
C++11 library for the DICOM standard (application)
odin (2.0.5-2) [universe]
develop, simulate and run magnetic resonance sequences
ogdi-bin (4.1.0+ds-5) [universe]
Open Geographic Datastore Interface Library -- utilities
ompl-demos (1.5.2+ds1-1) [universe]
Open Motion Planning Library (OMPL) demos
ompl-plannerarena (1.5.2+ds1-1) [universe]
Open Motion Planning Library (OMPL) plannerarena
ont-fast5-api (4.0.0+dfsg-1) [universe]
simple interface to HDF5 files of the Oxford Nanopore .fast5 file format
open3d-gui (0.14.1+dfsg-7build3) [universe]
Library for 3D data processing - GUI
open3d-gui-data (0.14.1+dfsg-7build3) [universe]
Library for 3D data processing - GUI resources
openbabel (3.1.1+dfsg-6ubuntu5) [universe]
Chemical toolbox utilities (cli)
openbabel-gui (3.1.1+dfsg-6ubuntu5) [universe]
Chemical toolbox utilities (graphical user interface)
opendrop (3.3.1-3build1) [universe]
fully-featured pendant drop tensiometry software
openfoam (1912.200626-1) [universe]
Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
openfoam-examples (1912.200626-1) [universe]
Open source toolbox for Computational Fluid Dynamics (CFD) - examples
openmolcas (21.10-1ubuntu1) [universe]
Quantum chemistry software package
openmolcas-data (21.10-1ubuntu1) [universe]
Quantum chemistry software package (data files)
openmotor (0.4.0-4) [universe]
internal ballistics simulator for rocket motor experimenters
openms (2.6.0+cleaned1-3build1) [universe]
package for LC/MS data management and analysis
openms-common (2.6.0+cleaned1-3build1) [universe]
package for LC/MS data management and analysis - shared data
openmx (3.8.5+dfsg1-1build1) [universe]
package for nano-scale material simulations
openmx-data (3.8.5+dfsg1-1build1) [universe]
package for nano-scale material simulations (data)
openrocket (15.03.6) [universe]
Model Rocket Simulator
openstructure (2.3.1-2build1) [universe]
Open-Source Computational Structural Biology Framework
openuniverse (1.0beta3.1+dfsg-7) [universe]
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-7) [universe]
3D Universe Simulator data files
optgeo (2.25-2build1) [universe]
simulator for geometrical optics
opticalraytracer (9.6-1) [universe]
Virtual lens/mirror design workshop
optimir (1.1-1) [universe]
Integrating genetic variations in miRNA alignment
origami (1.2.7+really0.7.4-1.1) [universe]
command-line management tool for Folding @ Home clients
orthanc (1.10.0+dfsg-1) [universe]
Lightweight, RESTful DICOM server for medical imaging
orthanc-dicomweb (1.7+dfsg-2build1) [universe]
Plugin to extend Orthanc with support of WADO and DICOMweb
orthanc-gdcm (1.4-3build1) [universe]
DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k)
orthanc-imagej (1.2+dfsg-3) [universe]
ImageJ plugin to import images from Orthanc
orthanc-mysql (4.3-3build1) [universe]
Plugins to use MySQL or MariaDB as a database back-end to Orthanc
orthanc-postgresql (4.0-5build1) [universe]
Plugins to use PostgreSQL as a database back-end to Orthanc
orthanc-python (4.0+ds-1) [universe]
Develop plugins for Orthanc using the Python programming language
orthanc-webviewer (2.8-1) [universe]
Web viewer of medical images for Orthanc
orthanc-wsi (1.1-2build1) [universe]
Whole-slide imaging support for Orthanc (digital pathology)
oscar (1.3.1-1) [universe]
Open Source CPAP Analysis Reporter (OSCAR)
otf-trace (1.12.5+dfsg-8) [universe]
Open Trace Format support library - development files
packmol (20.010-1build1) [universe]
Initial configurations for Molecular Dynamics Simulations
paje.app (1.98-1.1) [universe]
generic visualization tool (Gantt chart and more)
pal2nal (14.1-3) [universe]
converts proteins to genomic DNA alignment
paleomix (1.3.6-1) [universe]
pipelines and tools for the processing of ancient and modern HTS data
paml (4.9j+dfsg-3) [universe]
Phylogenetic Analysis by Maximum Likelihood (PAML)
pan-config (0.3) [universe]
PAN Blend config package
pan-tasks (0.3) [universe]
PAN Blends tasks for tasksel
paraclu (10-1) [universe]
Parametric clustering of genomic and transcriptomic features
parafly (0.1.0-3) [universe]
parallel command processing using OpenMP
parallel-fastq-dump (0.6.7-2) [universe]
parallel fastq-dump wrapper
paraview (5.10.0~rc1-1build3) [universe]
Parallel Visualization Application
parsinsert (1.04-10) [universe]
Parsimonious Insertion of unclassified sequences into phylogenetic trees
parsinsert-testdata (1.04-10) [universe]
Test data for parsinsert
parsnp (1.6.2+dfsg-1) [universe]
rapid core genome multi-alignment
patman (1.2.2+dfsg-8) [universe]
rapid alignment of short sequences to large databases
pbbamtools (2.0.0+dfsg-2) [universe]
processing Pacific Biosciences binary alignment/map files
pbdagcon (0.3+git20180411.c14c422+dfsg-8) [universe]
sequence consensus using directed acyclic graphs
pbhoney (15.8.24+dfsg-7) [universe]
genomic structural variation discovery
pbjelly (15.8.24+dfsg-7) [universe]
genome assembly upgrading tool
pbsim (1.0.3+git20180330.e014b1d+dfsg-2) [universe]
simulator for PacBio sequencing reads
pdb2pqr (2.1.1+dfsg-8) [universe]
Preparation of protein structures for electrostatics calculations
perlprimer (1.2.4-2) [universe]
Graphical design of primers for PCR
perlprimer-doc (1.2.4-2) [universe]
Tutorial to perlprimer
perm (0.4.0-8) [universe]
efficient mapping of short reads with periodic spaced seeds
pftools (3.2.11-2) [universe]
build and search protein and DNA generalized profiles
phast (1.6+dfsg-3) [universe]
phylogenetic analysis with space/time models
phipack (0.0.20160614-5) [universe]
PHI test and other tests of recombination
phybin (0.3-5build1) [universe]
binning/clustering newick trees by topology
phylip (1:3.697+dfsg-2) [universe]
package of programs for inferring phylogenies
phylip-doc (1:3.697+dfsg-2) [universe]
package of programs for inferring phylogenies (documentation)
phylonium (1.6-1) [universe]
Fast and Accurate Estimation of Evolutionary Distances
phyml (3:3.3.20211231-1) [universe]
Phylogenetic estimation using Maximum Likelihood
physamp (1.1.0-3) [universe]
sample sequence alignment corresponding to phylogeny
phyutility (2.7.3+dfsg-4) [universe]
simple analyses or modifications on both phylogenetic trees and data matrices
phyx (1.01+ds-2build1) [universe]
UNIX-style phylogenetic analyses on trees and sequences
picard-tools (2.26.10+dfsg-1) [universe]
Command line tools to manipulate SAM and BAM files
picopore (1.2.0-2) [universe]
lossless compression of Nanopore files
picosat (965-2) [universe]
SAT solver with proof and core support
pigx-rnaseq (0.0.19-2) [universe]
pipeline for checkpointed and distributed RNA-seq analyses
piler (0~20140707-3) [universe]
genomic repeat analysis
pilercr (1.06+dfsg-5) [universe]
software for finding CRISPR repeats
pilon (1.24-1) [universe]
automated genome assembly improvement and variant detection tool
pinfish (0.1.0+ds-3) [universe]
Collection of tools to annotate genomes using long read transcriptomics data
pinfish-examples (0.1.0+ds-3) [universe]
Examples and test data for pinfish
pique (1.0-3) [universe]
software pipeline for performing genome wide association studies
pirs (2.0.2+dfsg-10) [universe]
Profile based Illumina pair-end Reads Simulator
pirs-examples (2.0.2+dfsg-10) [universe]
profile basd Illumina pair-end Reads Simulator (example data)
pirs-profiles (2.0.2+dfsg-10) [universe]
profile basd Illumina pair-end Reads Simulator (profile data)
pizzly (0.37.3+ds-6) [universe]
Identifies gene fusions in RNA sequencing data
pkg-r-autopkgtest (20210218ubuntu1) [universe]
Script for the automatic testing of R packages
pktools (2.6.7.6+ds-3build3) [universe]
GDAL add-on tools to perform useful raster processing
placnet (1.04-1) [universe]
Plasmid Constellation Network project
planetary-system-stacker (0.8.31-2) [universe]
create a sharp image of a planetary system object (moon, sun, planets)
planets (0.1.13-20build2) [universe]
Gravitation simulation of planetary bodies
plasmidid (1.6.5+dfsg-1) [universe]
mapping-based, assembly-assisted plasmid identification tool
plasmidseeker (1.3+dfsg-2) [universe]
identification of known plasmids from whole-genome sequencing reads
plast (2.3.2+dfsg-8) [universe]
Parallel Local Sequence Alignment Search Tool
plast-example (2.3.2+dfsg-8) [universe]
Parallel Local Sequence Alignment Search Tool (example data)
plink (1.07+dfsg-4) [universe]
whole-genome association analysis toolset
plink1.9 (1.90~b6.21-201019-1) [universe]
whole-genome association analysis toolset
plink2 (2.00~a3-220218+dfsg-1) [universe]
whole-genome association analysis toolset
pluto-jpl-eph (0.0~git20180228-1.1build1) [universe]
command line handling of JPL ephemeres data
pluto-lunar (0.0~git20180825.e34c1d1-1build1) [universe]
routines for predictions of positions in solar system
pnetcdf-bin (1.12.2-1) [universe]
Programs for reading and writing parallel NetCDF files
poa (2.0+20060928-8) [universe]
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106+dfsg-6) [universe]
population genetic software
porechop (0.2.4+dfsg-3) [universe]
adapter trimmer for Oxford Nanopore reads
poretools (0.6.0+dfsg-5) [universe]
toolkit for nanopore nucleotide sequencing data
poretools-data (0.6.0+dfsg-5) [universe]
toolkit for nanopore nucleotide sequencing data -- sample datasets
pplacer (1.1~alpha19-6) [universe]
phylogenetic placement and downstream analysis
praat (6.2.09-1) [universe]
program for speech analysis and synthesis
prank (0.0.170427+dfsg-3) [universe]
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
predictnls (1.0.20-8) [universe]
prediction and analysis of protein nuclear localization signals
prime-phylo (1.0.11-10) [universe]
bayesian estimation of gene trees taking the species tree into account
primer3 (2.5.0-1) [universe]
tool to design flanking oligo nucleotides for DNA amplification
primer3-examples (2.5.0-1) [universe]
tool to design flanking oligo nucleotides for DNA amplification (examples)
prinseq-lite (0.20.4-6) [universe]
PReprocessing and INformation of SEQuence data (lite version)
prinseq-lite-examples (0.20.4-6) [universe]
PReprocessing and INformation of SEQuence data (example data)
proalign (0.603-5) [universe]
Probabilistic multiple alignment program
probabel (0.5.0+dfsg-4) [universe]
Toolset for Genome-Wide Association Analysis
probabel-examples (0.5.0+dfsg-4) [universe]
Example files for ProbABEL
probalign (1.4-9) [universe]
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-14) [universe]
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-14) [universe]
Extra programs from the probcons package
proda (1.0-13) [universe]
multiple alignment of protein sequences
prodigal (1:2.6.3-5) [universe]
Microbial (bacterial and archaeal) gene finding program
profbval (1.0.22-8) [universe]
predictor of flexible/rigid protein residues from sequence
profisis (1.0.11-7) [universe]
prediction of protein-protein interaction sites from sequence
profnet-bval (1.0.22-8) [universe]
neural network architecture for profbval
profnet-chop (1.0.22-8) [universe]
neural network architecture for profchop
profnet-con (1.0.22-8) [universe]
neural network architecture for profcon
profnet-isis (1.0.22-8) [universe]
neural network architecture for profisis
profnet-md (1.0.22-8) [universe]
neural network architecture for metadisorder
profnet-norsnet (1.0.22-8) [universe]
neural network architecture for norsnet
profnet-prof (1.0.22-8) [universe]
neural network architecture for profacc
profnet-snapfun (1.0.22-8) [universe]
neural network architecture for snapfun
profphd-net (1.0.22-8) [universe]
neural network architecture for profphd
profphd-utils (1.0.10-7) [universe]
profphd helper utilities convert_seq and filter_hssp
proftmb (1.1.12-11) [universe]
per-residue prediction of bacterial transmembrane beta barrels
progressivemauve (1.2.0+4713+dfsg-5build1) [universe]
multiple genome alignment algorithms
proj-bin (8.2.1-1) [universe]
Cartographic projection library (tools)
proj-rdnap (2008+2018-5) [multiverse]
RDNAP grid correction files for PROJ
prokka (1.14.6+dfsg-4) [universe]
rapid annotation of prokaryotic genomes
prooftree (0.13-2build4) [universe]
proof-tree visualization for Proof General
proteinortho (6.0.33+dfsg-1) [universe]
Detection of (Co-)orthologs in large-scale protein analysis
prottest (3.4.2+dfsg-7) [universe]
selection of best-fit models of protein evolution
pscan-chip (1.1-3build1) [universe]
ChIP-based identifcation of TF binding sites
pscan-chip-data (1.1-3build1) [universe]
auxiliary data for PScan-ChIP
pscan-tfbs (1.2.2-4build1) [universe]
search for transcription factor binding sites
psfex (3.17.1+dfsg-6) [universe]
Point Spread Function model extractor
psi3 (3.4.0-6ubuntu1) [universe]
Quantum Chemical Program Suite
psi4 (1:1.3.2+dfsg-2.1) [universe]
Quantum Chemical Program Suite
psi4-data (1:1.3.2+dfsg-2.1) [universe]
Quantum Chemical Program Suite (data files)
psortb (3.0.6+dfsg-2build2) [universe]
bacterial localization prediction tool
psychopy (2022.1.1+dfsg-1) [universe]
environment for creating psychology stimuli in Python
psychtoolbox-3-common (3.0.18.4.dfsg1-1) [universe]
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (3.0.18.4.dfsg1-1) [universe]
toolbox for vision research -- arch-specific parts
pullseq (1.0.2-3) [universe]
Extract sequence from a fasta or fastq
pycoqc (2.5.2+dfsg-3) [universe]
computes metrics and generates Interactive QC plots
pyensembl (1.9.4+ds-1) [universe]
installs data from the Ensembl genome database
pyfai (0.21.1+dfsg1-1build1) [universe]
Fast Azimuthal Integration scripts
pyfr (1.5.0-3) [universe]
flux reconstruction in Python
pymca (5.7.1+dfsg-1build1) [universe]
Applications and toolkit for X-ray fluorescence analysis -- scripts
pymca-data (5.7.1+dfsg-1build1) [universe]
Architecture independent data files for PyMca
pymoctool (0.5.0-5) [universe]
Python Multi-Order Coverage maps tool for Virtual Observatory
pymol (2.5.0+dfsg-1build1) [universe]
Molecular Graphics System
pymol-data (2.5.0+dfsg-1build1) [universe]
data files for PyMOL
python-drizzle-testdata (1.13.4-1build1) [universe]
Dithered image combination for Python (Test data)
python-escript-doc (5.6-4build1) [universe]
Documentation for Escript/Finley
python-pairix-examples (0.3.7-5build1) [universe]
1D/2D indexing and querying with a pair of genomic coordinates (examples)
python3-airr (1.3.1-1) [universe]
Data Representation Standard library for antibody and TCR sequences
python3-alignlib (0.1.1+dfsg-2build1) [universe]
edit and Hamming distances for biological sequences
python3-amp (0.6.1-1build6) [universe]
Atomistic Machine-learning Package (python 3)
python3-bornagain (1.19.0-3build2) [universe]
Simulate and fit X-ray and neutron GISAS -- Python3
python3-cif2cell (2.0.0a3+dfsg-1) [universe]
prepare CIF files for electronic structure calculations
python3-dcmstack (0.8-3) [universe]
DICOM to NIfTI conversion - python3 package
python3-emperor (1.0.3+ds-2) [universe]
visualizing high-throughput microbial community data
python3-escript (5.6-4build1) [universe]
Escript/Finley finite elements Python3 system (with OpenMP)
python3-escript-mpi (5.6-4build1) [universe]
Escript/Finley finite elements Python3 system (OpenMP + MPI)
python3-faiss (1.7.2-5) [universe]
Python 3 module for efficient similarity search and clustering of dense vectors
python3-freesas (0.9.0-3) [universe]
Python libraries for small angle scattering tools
python3-gfapy (1.2.3+dfsg-1) [universe]
flexible and extensible software library for handling sequence graphs
python3-gffutils (0.10.1-2) [universe]
Work with GFF and GTF files in a flexible database framework
python3-gtfparse (1.2.1+ds-2) [universe]
parser for gene transfer format (aka GFF2)
python3-harmonypy (0.0.5-2) [universe]
is a data integration algorithm
python3-jupyter-sphinx (0.3.2-1) [universe]
Jupyter Sphinx Extension - Python3
python3-louvain (0.0+20181013git3fc1f575-2) [universe]
community graph analysis implementing Louvain method
python3-mmtf (1.1.2-3) [universe]
binary encoding of biological structures (Python 3)
python3-navarp (1.3.0-1) [universe]
Navigation tool for ARPES data (Python 3)
python3-noise (1.2.3-3build4) [universe]
Perlin noise for image generation
python3-onnx (1.7.0+dfsg-3ubuntu2) [universe]
Open Neural Network Exchange (ONNX) (Python)
python3-peptidebuilder (1.1.0-3) [universe]
generate atomic oligopeptide 3D structure from sequence
python3-py2bit (0.3.0-6build3) [universe]
access to 2bit files
python3-pybel (0.14.10-1) [universe]
Biological Expression Language
python3-pybigwig (0.3.18+dfsg-1build1) [universe]
Python 3 module for quick access to bigBed and bigWig files
python3-pynlpl (1.2.9-1) [universe]
PyNLPl is a library for Natural Language Processing (Python 3 version)
python3-pynndescent (0.5.2+dfsg-1) [universe]
nearest neighbor descent for approximate nearest neighbors
python3-pyvkfft (2022.1.1-2build1) [multiverse]
binding to the CUDA and OpenCL backends of VkFFT - Python3
python3-pyxrd (0.8.4-2) [universe]
modeling of X-ray diffraction (XRD) patterns of disordered lamellar structures
python3-qiskit-aer (0.4.1-2build2) [universe] [ports]
Quantum Information Science Kit (Qiskit): Aer
python3-qiskit-ibmq-provider (0.4.6-3) [universe]
Quantum Information Science Kit (Qiskit): IBM Q Provider
python3-qiskit-terra (0.12.0-4) [universe]
Quantum Information Science Kit (Qiskit) for Python 3
python3-seqcluster (1.2.8+ds-1) [multiverse]
analysis of small RNA in NGS data
python3-skorch (0.9.0-3ubuntu1) [universe]
scikit-learn compatible neural network library that wraps PyTorch
python3-tinyalign (0.2.1-1build1) [universe]
numerical representation of differences between strings
python3-torch-ignite (0.4.3-1ubuntu1) [universe]
High-level library to help with training and evaluating in PyTorch
python3-torchaudio (0.7.2-1ubuntu2) [universe]
Data manipulation and transformation for audio signal processing
python3-torchtext (0.8.1-1ubuntu1) [universe]
Data loaders and abstractions for text and NLP
python3-torchvision (0.8.2-1ubuntu2) [universe]
Datasets, Transforms and Models specific to Computer Vision
python3-xrstools (0.15.0+git20210910+c147919d-2build1) [universe]
x-ray Raman scattering tools (Python 3)
pyzo (4.11.2-1) [universe]
interactive editor for scientific Python
q2-alignment (2021.8.0-1) [universe]
QIIME 2 plugin for generating and manipulating alignments
q2-cutadapt (2021.8.0-1) [universe]
QIIME 2 plugin to work with adapters in sequence data
q2-dada2 (2021.8.0-1) [universe]
QIIME 2 plugin to work with adapters in sequence data
q2-demux (2021.8.0+dfsg-1) [universe]
QIIME 2 plugin for demultiplexing of sequence reads
q2-feature-classifier (2021.8.0-1) [universe]
QIIME 2 plugin supporting taxonomic classification
q2-feature-table (2021.8.0+dfsg-1) [universe]
QIIME 2 plugin supporting operations on feature tables
q2-fragment-insertion (2021.8.0-3) [universe]
QIIME 2 plugin for fragment insertion
q2-metadata (2021.8.0-1) [universe]
QIIME 2 plugin for working with and visualizing Metadata
q2-phylogeny (2021.4.0-2) [universe]
QIIME 2 plugin for phylogeny
q2-quality-control (2021.8.0-1) [universe]
QIIME 2 plugin for quality assurance of feature and sequence data
q2-quality-filter (2021.8.0-1) [universe]
QIIME2 plugin for PHRED-based filtering and trimming
q2-sample-classifier (2021.8.0-1) [universe]
QIIME 2 plugin for machine learning prediction of sample data
q2-taxa (2021.8.0+dfsg-1) [universe]
QIIME 2 plugin for working with feature taxonomy annotations
q2-types (2021.8.0-1) [universe]
QIIME 2 plugin defining types for microbiome analysis
q2templates (2021.8.0+ds-1) [universe]
Design template package for QIIME 2 Plugins
qcat (1.1.0-3) [universe]
demultiplexing Oxford Nanopore reads from FASTQ files
qcat-examples (1.1.0-3) [universe]
demultiplexing Oxford Nanopore reads from FASTQ files (examples)
qcumber (2.3.0-2) [universe]
quality control of genomic sequences
qemu-web-desktop (21.11.30+ds1-1) [universe]
Remote desktop service with virtual machines in a browser.
qfits-tools (6.2.0-8ubuntu2) [universe]
FITS manipulation tools
qfitsview (4.1+dfsg-1build1) [universe]
FITS file viewer based on DPUSER
qgis (3.22.4+dfsg-3build1) [universe]
Geographic Information System (GIS)
qgis-api-doc (3.22.4+dfsg-3build1) [universe]
QGIS API documentation
qgis-common (3.22.4+dfsg-3build1) [universe]
QGIS - architecture-independent data
qgis-plugin-grass (3.22.4+dfsg-3build1) [universe]
GRASS plugin for QGIS
qgis-plugin-grass-common (3.22.4+dfsg-3build1) [universe]
GRASS plugin for QGIS - architecture-independent data
qgis-provider-grass (3.22.4+dfsg-3build1) [universe]
GRASS provider for QGIS
qgis-providers (3.22.4+dfsg-3build1) [universe]
collection of data providers to QGIS
qgis-providers-common (3.22.4+dfsg-3build1) [universe]
collection of data providers to QGIS - architecture-independent files
qgis-server (3.22.4+dfsg-3build1) [universe]
QGIS server providing various OGC services
qgis-server-bin (3.22.4+dfsg-3build1) [universe]
QGIS server providing various OGC services (executables)
qgis-server-common (3.22.4+dfsg-3build1) [universe]
QGIS server providing various OGC services (data)
qgis-server-dummy (3.22.4+dfsg-3build1) [universe]
QGIS server providing various OGC services (dummy)
qgis-server-landingpage (3.22.4+dfsg-3build1) [universe]
QGIS server providing various OGC services (landing page)
qgis-server-wcs (3.22.4+dfsg-3build1) [universe]
QGIS server providing various OGC services (WCS)
qgis-server-wfs (3.22.4+dfsg-3build1) [universe]
QGIS server providing various OGC services (WFS)
qgis-server-wfs3 (3.22.4+dfsg-3build1) [universe]
QGIS server providing various OGC services (WFS 3)
qgis-server-wms (3.22.4+dfsg-3build1) [universe]
QGIS server providing various OGC services (WMS)
qgis-server-wmts (3.22.4+dfsg-3build1) [universe]
QGIS server providing various OGC services (WMTS)
qgis3-survex-import (1.3-1) [universe]
QGIS3 plugin to read survex 3d files, for cave surveying
qiime (2021.8.0-2) [universe]
Quantitative Insights Into Microbial Ecology
qmapshack (1.16.1-1build2) [universe]
GPS mapping (GeoTiff and vector) and GPSr management
qmc (0.94-4) [universe]
Quine McClusky Simplification Tool
qnifti2dicom (0.4.11-3) [universe]
convert 3D medical images to DICOM 2D series (gui)
qrisk2 (0.1.20150729-5) [universe]
cardiovascular disease risk calculator
qthid-fcd-controller (4.1-6) [universe]
Funcube Dongle controller
qtltools (1.3.1+dfsg-2build2) [universe]
Tool set for molecular QTL discovery and analysis
quantum-espresso (6.7-2build1) [universe]
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
quantum-espresso-data (6.7-2build1) [universe]
Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
quicktree (2.5-5) [universe]
Neighbor-Joining algorithm for phylogenies
quorum (1.1.1-6) [universe]
QUality Optimized Reads of genomic sequences
qutemol (0.4.1~cvs20081111-14build1) [universe]
interactive visualization of macromolecules
r-cran-colorspace (2.0-2+dfsg-1) [universe]
GNU R Color Space Manipulation
r-cran-epibasix (1.5-2build1) [universe]
GNU R Elementary Epidemiological Functions
r-cran-genetics (1.3.8.1.3-1) [universe]
GNU R package for population genetics
r-cran-haplo.stats (1.8.7-1) [universe]
GNU R package for haplotype analysis
r-cran-maptools (1:1.1-2+dfsg-1) [universe]
GNU R Tools for reading and handling spatial objects
r-cran-msm (1.6.9-1) [universe]
GNU R Multi-state Markov and hidden Markov models in continuous time
r-cran-randomforest (4.7-1-1) [universe]
GNU R package implementing the random forest classificator
r-cran-sdmtools (1.1-221.2-1build1) [universe]
Species Distribution Modelling Tools
r-cran-sp (1:1.4-6-1) [universe]
GNU R classes and methods for spatial data
r-cran-spc (1:0.6.5-1) [universe]
GNU R Statistical Process Control
r-cran-surveillance (1.19.1-1) [multiverse]
GNU R package for the Modeling and Monitoring of Epidemic Phenomena
r-cran-vcd (1:1.4-9-1) [universe]
GNU R Visualizing Categorical Data
r-cran-xtable (1:1.8-4-2) [universe]
GNU R coerce data to LaTeX and HTML tables
racon (1.5.0-2) [universe]
consensus module for raw de novo DNA assembly of long uncorrected reads
radiant (2.8.1+dfsg-1) [universe]
explore hierarchical metagenomic data with zoomable pie charts
ragout (2.3-3) [universe]
Reference-Assisted Genome Ordering UTility
ragout-examples (2.3-3) [universe]
Reference-Assisted Genome Ordering UTility (example data)
rambo-k (1.21+dfsg-4) [universe]
Read Assignment Method Based On K-mers
rampler (2.0.0-2) [universe]
module for sampling genomic sequences
rapmap (0.15.0+dfsg-2) [universe]
rapid sensitive and accurate DNA read mapping via quasi-mapping
rapmap-dev (0.15.0+dfsg-2) [universe]
rapmap - rapid sensitive and accurate DNA read mapping (some headers)
rapmap-example-data (0.15.0+dfsg-2) [universe]
example data for rapmap - rapid sensitive and accurate DNA read mapping
rasmol (2.7.6.0-2) [universe]
visualization of biological macromolecules
rasmol-doc (2.7.6.0-2) [universe]
documentation for rasmol
raster3d (3.0-7-2) [multiverse]
tools for generating images of proteins or other molecules
rate4site (3.0.0-8) [universe]
detector of conserved amino-acid sites
rawtran (1.1-1build2) [universe]
RAW photo to FITS converter
raxml (8.2.12+dfsg-8) [universe]
Randomized Axelerated Maximum Likelihood of phylogenetic trees
ray (2.3.1-7build1) [universe]
de novo genome assemblies of next-gen sequencing data
ray-extra (2.3.1-7build1) [universe]
Scripts and XSL sheets for post-processing for ray
rdkit-data (202109.2-1build1) [universe]
Collection of cheminformatics and machine-learning software (data files)
rdp-classifier (2.10.2-6) [universe]
extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
readseq (1-14) [universe]
Conversion between sequence formats
readucks (0.0.3-3) [universe]
Nanopore read de-multiplexer (read demux -> readux -> readucks, innit)
reapr (1.0.18+dfsg-5build1) [universe]
universal tool for genome assembly evaluation
recan (0.1.2-2) [universe]
genetic distance plotting for recombination events analysis
refmac-dictionary (5.41-2) [universe]
dictionary for macromolecular refinement and model building
relion (3.1.3-1) [universe]
toolkit for 3D reconstructions in cryo-electron microscopy
relion-cuda (3.1.0-2) [multiverse]
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-gui (3.1.3-1) [universe]
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-gui-cuda (3.1.0-2) [multiverse]
parallel toolkit for 3D reconstructions in cryo-electron microscopy
repeatmasker-recon (1.08-7) [universe]
finds repeat families from biological sequences
reprof (1.0.1-8) [universe]
protein secondary structure and accessibility predictor
resfinder (4.1.6-1) [universe]
identify acquired antimicrobial resistance genes
resfinder-db (0.0+git20200408.0322c0d-1) [universe]
ResFinder database is a curated database of acquired resistance genes
resfinder-example (4.1.6-1) [universe]
identify acquired antimicrobial resistance genes (example data)
rna-star (2.7.10a+dfsg-1) [universe]
ultrafast universal RNA-seq aligner
rnahybrid (2.1.2-6) [universe]
Fast and effective prediction of microRNA/target duplexes
roary (3.13.0+dfsg-1) [universe]
high speed stand alone pan genome pipeline
rocketcea (1.1.18+dfsg-2build2) [universe]
NASA Chemical Equilibrium, wrapped in Python
rocs (4:21.12.3-0ubuntu1) [universe]
graph theory IDE
roguenarok (1.0.1-3) [universe]
versatile and scalable algorithm for rogue taxon identification
routine-update (0.0.10) [universe]
routine updater for a Debian source package
rsem (1.3.3+dfsg-2) [universe]
RNA-Seq by Expectation-Maximization
rtax (0.984-8) [universe]
Classification of sequence reads of 16S ribosomal RNA gene
ruby-getspg (1.16.2-2build3) [universe]
C library for crystal symmetry determination - Ruby bindings
ruby-rgfa (1.3.1+dfsg-2) [universe]
parse, edit and write GFA format graphs in Ruby
runcircos-gui (0.0+git20200528.82dda8c-1) [universe]
GUI tool to run circos
sac2mseed (1.13+ds1-1) [universe]
Convert SAC waveform data to MiniSEED
saga (7.3.0+dfsg-7) [universe]
System for Automated Geoscientific Analyses
saga-common (7.3.0+dfsg-7) [universe]
SAGA GIS architecture independent files
saint (2.5.0+dfsg-4build1) [universe]
Significance Analysis of INTeractome
salmid (0.1.23-4) [universe]
rapid Kmer based Salmonella identifier from sequence data
salmon (1.4.0+ds1-1build1) [universe]
wicked-fast transcript quantification from RNA-seq data
sambamba (0.8.2+dfsg-2) [universe]
tools for working with SAM/BAM data
samblaster (0.1.26-3) [universe]
marks duplicates, extracts discordant/split reads
samclip (0.4.0-3) [universe]
filter SAM file for soft and hard clipped alignments
samtools (1.13-4) [universe]
processing sequence alignments in SAM, BAM and CRAM formats
samtools-test (1.13-4) [universe]
test files for the samtools package
saods9 (8.3+repack-1) [universe]
Image display tool for astronomy
sasview (5.0.4-1) [universe]
Small Angle Scattering Analysis suite
sat4j (2.3.5-0.3) [universe]
Efficient library of SAT solvers in Java
savi (1.5.1-4) [universe]
satellite constellation visualisation
sbmltoolbox (4.1.0-5) [universe]
libsbml toolbox for octave and matlab
scamp (2.10.0-2) [universe]
Compute astrometric and photometric solutions
science-distributedcomputing (1.14.2ubuntu1) [universe]
Debian Science Distributed Computing packages
science-electrophysiology (1.14.2ubuntu1) [universe]
Debian Science packages for Electrophysiology
science-highenergy-physics (1.14.2ubuntu1) [universe]
Debian Science High Energy Physics packages
science-highenergy-physics-dev (1.14.2ubuntu1) [universe]
Debian Science High Energy Physics development packages
science-machine-learning (1.14.2ubuntu1) [universe]
Debian Science Machine Learning packages
science-nanoscale-physics (1.14.2ubuntu1) [universe]
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (1.14.2ubuntu1) [universe]
Debian Science Nanoscale Physics development packages
science-neuroscience-modeling (1.14.2ubuntu1) [universe]
Debian Science packages for modeling of neural systems
science-physics-dev (1.14.2ubuntu1) [universe]
Debian Science Physics-dev packages
science-psychophysics (1.14.2ubuntu1) [universe]
Debian Science packages for Psychophysics
science-simulations (1.14.2ubuntu1) [universe]
Debian Science Simulation packages
scoary (1.6.16-3) [universe]
pangenome-wide association studies
scram (0.16.2-3) [universe]
Probabilistic Risk Analysis Tool
scram-gui (0.16.2-3) [universe]
SCRAM GUI front-end
scrappie (1.4.2-8) [universe]
basecaller for Nanopore sequencer
scrm (1.7.4-1) [universe]
simulator of evolution of genetic sequences
sctk (2.4.10-20151007-1312Z+dfsg2-3.1) [universe]
speech recognition scoring toolkit
scythe (0.994+git20141017.20d3cff-3) [universe]
Bayesian adaptor trimmer for sequencing reads
sdaps (1.9.8-0.1build2) [universe]
scripts for data acquisition with paper-based surveys
seaview (1:5.0.5-1) [multiverse]
Multiplatform interface for sequence alignment and phylogeny
secrecy (0.0.5+ds-2) [universe]
tool to handle libsecrecy keys and encrypted files
seer (1.1.4-6) [universe]
genomic sequence element (kmer) enrichment analysis
segemehl (0.3.4-5) [universe]
short read mapping with gaps
segyio-bin (1.8.3-1.1ubuntu2) [universe]
SEG-Y read/write library for seismic processing (shell utilities)
sentencepiece (0.1.96-1build1) [universe]
Unsupervised text tokenizer and detokenizer
sepp (4.5.1+really4.5.1+dfsg-3) [universe]
phylogeny with ensembles of Hidden Markov Models
seq-gen (1.3.4-2) [universe]
simulate the evolution of nucleotide or amino acid sequences
seqcluster (1.2.8+ds-1) [multiverse]
analysis of small RNA in NGS data
seqkit (2.1.0+ds-1) [universe]
cross-platform and ultrafast toolkit for FASTA/Q file manipulation
seqkit-examples (2.1.0+ds-1) [universe]
examples for seqkit: toolkit for FASTA/Q file manipulation
seqmagick (0.8.4-3) [universe]
imagemagick-like frontend to Biopython SeqIO
seqprep (1.3.2-7) [universe]
stripping adaptors and/or merging paired reads of DNA sequences with overlap
seqprep-data (1.3.2-7) [universe]
example data set for seqprep - only used for testing
seqsero (1.0.1+dfsg-5) [universe]
Salmonella serotyping from genome sequencing data
seqtk (1.3-2) [universe]
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
seriation (0.1+git20210125.fc7b8cb-1) [universe]
finds a suitable linear order for a set of objects
seriation-data (0.1+git20210125.fc7b8cb-1) [universe]
test data for seriation
sextractor (2.25.0+ds-3) [universe]
Dummy transitional package for name change
sga (0.10.15-7) [universe]
de novo genome assembler that uses string graphs
shapeit4 (4.2.2+dfsg-1) [universe]
fast and accurate method for estimation of haplotypes (phasing)
shasta (0.8.0-2ubuntu1) [universe]
nanopore whole genome assembly (binaries and scripts)
shelxle (1.0.1346-1) [universe]
graphical user interface for SHELXL
shovill (1.1.0-5) [universe]
Assemble bacterial isolate genomes from Illumina paired-end reads
shovill-examples (1.1.0-5) [universe]
Test Data for shovill
sibelia (3.0.7+dfsg-3) [universe]
comparative genomics tool
sibelia-examples (3.0.7+dfsg-3) [universe]
comparative genomics tool (example data)
sibsim4 (0.20-5) [universe]
align expressed RNA sequences on a DNA template
sickle (1.33+git20150314.f3d6ae3-2) [universe]
windowed adaptive trimming tool for FASTQ files using quality
siconos (4.3.1+dfsg-2build3) [universe]
modeling and simulation of nonsmooth dynamical systems (simulation runner tool)
siconos-mechanics-tools (4.3.1+dfsg-2build3) [universe]
modeling and simulation of nonsmooth dynamical systems (mechanics tools)
sift (4.0.3b-6) [multiverse]
predicts if a substitution in a protein has a phenotypic effect
sightcalibrator (21.0.0-4) [universe]
Camera calibration software
sightviewer (21.0.0-4) [universe]
DICOM viewer
sigma-align (1.1.3-8) [universe]
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.6.4-2) [universe]
GUI viewer for biosignals such as EEG, EMG, and ECG
silx (1.0.0+dfsg-4) [universe]
Toolbox for X-Ray data analysis - Executables
sim4 (0.0.20121010-8) [universe]
tool for aligning cDNA and genomic DNA
sim4db (0~20150903+r2013-8build2) [universe]
batch spliced alignment of cDNA sequences to a target genome
simka (1.5.3-5) [universe]
comparative metagenomics method dedicated to NGS datasets
simkamin (1.5.3-5) [universe]
approximate comparative metagenomics method dedicated to NGS datasets
simrisc (14.05.00-3) [universe]
simulation model for breast cancer risk
siril (0.99.10.1-2build1) [universe]
astronomical image processing tool
siril-common (0.99.10.1-2build1) [universe]
architecture-independent files for siril
skesa (2.4.0-3) [universe]
strategic Kmer extension for scrupulous assemblies
skewer (0.2.2-6) [universe]
post-processing of high-throughput DNA sequence reads
skycat (3.1.2+starlink1~b+dfsg-6) [universe]
Image visualization and access to catalogs and data for astronomy
slang-xfig (0.2.0~.135-1) [universe]
produce plots and drawings through Xfig's fig2dev in S-Lang
smalt (0.7.6-12) [universe]
Sequence Mapping and Alignment Tool
smalt-examples (0.7.6-12) [universe]
Sequence Mapping and Alignment Tool (examples)
smithwaterman (0.0+git20160702.2610e25-12) [universe]
determine similar regions between two strings or genomic sequences
smrtanalysis (0~20210112) [universe]
software suite for single molecule, real-time sequencing
snakemake (6.15.1-2) [universe]
pythonic workflow management system
snap (2013-11-29-11) [universe]
location of genes from DNA sequence with hidden markov model
snap-aligner (1.0.0+dfsg-3) [universe]
Scalable Nucleotide Alignment Program
snaphu (2.0.5-1) [multiverse]
Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
sniffles (2.0.2-1) [universe]
structural variation caller using third-generation sequencing
snp-sites (2.5.1-2) [universe]
Binary code for the package snp-sites
snpomatic (1.0-5) [universe]
fast, stringent short-read mapping software
soapaligner (2.20-5) [universe]
aligner of short reads of next generation sequencers
soapdenovo (1.05-6) [universe]
short-read assembly method to build de novo draft assembly
soapdenovo2 (242+dfsg-2) [universe]
short-read assembly method to build de novo draft assembly
soapsnp (1.03-4) [universe]
resequencing utility that can assemble consensus sequence of genomes
solvate (1.0-3) [multiverse]
arranges water molecules around protein structures
solvate-doc (1.0-3) [multiverse]
Documentation for solvate
sortmerna (2.1-5) [universe]
tool for filtering, mapping and OTU-picking NGS reads
source-extractor (2.25.0+ds-3) [universe]
Source extractor for astronomical images
spaced (1.2.0-201605+dfsg-3) [universe]
alignment-free sequence comparison using spaced words
spades (3.13.1+dfsg-2ubuntu1) [universe]
genome assembler for single-cell and isolates data sets
spaln (2.4.7+dfsg-1) [universe]
splicing-aware transcript-alignment to genomic DNA
spaln-data (2.4.7+dfsg-1) [universe]
splicing-aware transcript-alignment to genomic DNA (data)
spass (3.9-1.1) [universe]
automated theorem prover for first-order logic with equality
spatialite-bin (5.0.1-1build1) [universe]
Geospatial extension for SQLite - tools
spd (1.3.0-1ubuntu3) [universe]
Synchrotron image corrections and azimuthal integration
splash (3.3.4-1) [universe]
Visualisation tool for Smoothed Particle Hydrodynamics simulation
spoa (4.0.7+ds-2) [universe]
SIMD partial order alignment tool
sprai (0.9.9.23+dfsg1-2) [universe]
single-pass sequencing read accuracy improver
spread-phy (1.0.7+dfsg-4) [multiverse]
analyze and visualize phylogeographic reconstructions
spview (2.0.0~beta2-2) [universe]
Spectrum Viewer
squizz (0.99d+dfsg-3) [universe]
Converter for genetic sequences and alignments
sra-toolkit (2.11.3+dfsg-1ubuntu1) [universe]
utilities for the NCBI Sequence Read Archive
srst2 (0.2.0-9) [universe]
Short Read Sequence Typing for Bacterial Pathogens
ssake (4.0.1-1) [universe]
genomics application for assembling millions of very short DNA sequences
ssake-examples (4.0.1-1) [universe]
example data for SSAKE, a genomic assembler of short reads
sspace (2.1.1+dfsg-6) [universe]
scaffolding pre-assembled contigs after extension
ssshtest (0.0+git20190416.6f5438a-2) [universe]
stupid simple (ba)sh testing
ssw-align (1.1-13) [universe]
Smith-Waterman aligner based on libssw
stacks (2.60+dfsg-1) [universe]
pipeline for building loci from short-read DNA sequences
staden (2.0.0+b11-4build2) [universe]
DNA sequence assembly (Gap4/Gap5), editing and analysis tools
staden-common (2.0.0+b11-4build2) [universe]
Architecture independent files for Staden
staden-io-lib-examples (1.14.14+dfsg-1) [universe]
programs for manipulating DNA sequencing files (usage examples)
staden-io-lib-utils (1.14.14+dfsg-1) [universe]
programs for manipulating DNA sequencing files
stardata-common (0.8build1) [universe]
Common framework to manage astronomy packages
starplot (0.95.5-8.3build2) [universe]
3-dimensional perspective star map viewer
starpu-contrib-examples (1.3.9+dfsg-1) [multiverse]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples (1.3.9+dfsg-1) [universe]
Task scheduler for heterogeneous multicore machines - exs
stellarium (0.20.4-3) [universe]
real-time photo-realistic sky generator
stellarium-data (0.20.4-3) [universe]
Stellarium data files
stiff (2.4.0-6) [universe]
convert scientific FITS images to the TIFF format
stilts (3.4.3-1) [universe]
Starlink Tables Infrastructure Library Tool Set
stimfit (0.16.0-1ubuntu1) [universe]
Program for viewing and analyzing electrophysiological data
stringtie (2.2.1+ds-2) [universe]
assemble short RNAseq reads to transcripts
subread (2.0.3+dfsg-1) [universe]
toolkit for processing next-gen sequencing data
subread-data (2.0.3+dfsg-1) [universe]
data files for subread package
suitename (0.4.130509+git20210223.ebb1325-1) [universe]
categorize each suite in an RNA backbone
sumaclust (1.0.36+ds-1) [universe]
fast and exact clustering of genomic sequences
sumatra (1.0.36+ds-1) [universe]
fast and exact comparison and clustering of sequences
sumo (1.12.0+dfsg1-1) [universe]
Simulation of Urban MObility (SUMO)
surankco (0.0.r5+dfsg-3) [universe]
Supervised Ranking of Contigs in de novo Assemblies
surpyvor (0.5-2) [universe]
modification of VCF files with SURVIVOR
survex (1.4.1-1) [universe]
cave surveying and mapping software
survex-aven (1.4.1-1) [universe]
sophisticated cave survey viewer for Survex
survivor (1.0.7-3) [universe]
tool set for simulating/evaluating SVs
svim (2.0.0-2) [universe]
Structural variant caller for long sequencing reads
swarm (3.1.0+dfsg-1) [universe]
robust and fast clustering method for amplicon-based studies
swarp (2.41.5-1) [universe]
Resample and co-add together FITS images
swarp
virtual package provided by suckless-tools
swe-basic-data (1.80.00.0002-1.1) [universe]
basic data files for the libswe package
swe-standard-data (00004-1.1) [universe]
standard data for the Swiss Ephemeris
sweed (3.2.1+dfsg-5) [universe]
assessment of SNPs for their evolutionary advantage
syrthes (4.3.5+20200129-dfsg1-1build1) [universe]
Transient thermal simulations in complex solid geometries
syrthes-gui (4.3.5+20200129-dfsg1-1build1) [universe]
Transient thermal simulations in complex solid geometries - GUI
syrthes-tests (4.3.5+20200129-dfsg1-1build1) [universe]
Test cases for SYRTHES
syrthes-tools (4.3.5+20200129-dfsg1-1build1) [universe]
Transient thermal simulations in complex solid geometries - tools
t-coffee (13.41.0.28bdc39+dfsg-4) [universe]
Multiple Sequence Alignment
t-coffee-examples (13.41.0.28bdc39+dfsg-4) [universe]
annotated examples for the use of T-Coffee
tabix (1.13+ds-2build1) [universe]
generic indexer for TAB-delimited genome position files
tandem-mass (1:201702011-1build1) [universe]
mass spectrometry software for protein identification
tantan (26-1) [universe]
low complexity and tandem repeat masker for biosequences
tcd-utils (20061127-2build1) [universe]
convert Tide Constituent Database (TCD) files
tcl-fitstcl (2.4-4build2) [universe]
Tcl interface to FITS files
tclfitsy (8.3+repack-1) [universe]
Tcl FITS Extension
tcliis (8.3+repack-1) [universe]
Tcl IIS protocol package
terraintool (1.16-3) [universe]
Generates survex/therion terrain models from SRTM/NASADEM data.
theli (3.1.3-1) [universe]
Astronomical image data reduction pipeline
therion (6.0.5-1) [universe]
Cave surveying - 2D and 3D drawing software
therion-doc (6.0.5-1) [universe]
Documentation for Therion Cave surveying software
therion-viewer (6.0.5-1) [universe]
Cave surveying - 3D viewer for therion models
theseus (3.3.0-10build1) [universe]
superimpose macromolecules using maximum likelihood
theseus-examples (3.3.0-10build1) [universe]
superimpose macromolecules using maximum likelihood (examples)
thesias (3.1.1-1) [universe]
Testing Haplotype Effects In Association Studies
threeb (0.0~git20220106110332.a3144e0-4) [universe]
3B Microscopy Analysis Software - command-line tool
threeb-imagej (0.0~git20220106110332.a3144e0-4) [universe]
3B Microscopy Analysis Software - ImageJ plugin
tiddit (2.12.2+dfsg-1build1) [universe]
structural variant calling
tigr-glimmer (3.02b-6) [universe]
Gene detection in archea and bacteria
timbl (6.5-3) [universe]
Tilburg Memory Based Learner
timblserver (1.14-3) [universe]
Server extensions for Timbl
tipp (1.0+dfsg-2) [universe]
tool for Taxonomic Identification and Phylogenetic Profiling
tksao (8.3+repack-1) [universe]
Tk widgets for astronomical imaging and data visualization
tm-align (20190822+dfsg-2build1) [universe]
structural alignment of proteins
tnseq-transit (3.2.3-2) [universe]
statistical calculations of essentiality of genes or genomic regions
tombo (1.5.1-3build2) [universe]
identification of modified nucleotides from raw nanopore sequencing data
topcat (4.8.3-1) [universe]
Tool for OPerations on Catalogues And Tables
tophat-recondition (1.4-3) [universe]
post-processor for TopHat unmapped reads
topp (2.6.0+cleaned1-3build1) [universe]
set of programs implementing The OpenMS Proteomic Pipeline
toppic (1.3.0+dfsg1-4build1) [universe]
Top-down proteoform identification and characterization (programs)
toppic-common (1.3.0+dfsg1-4build1) [universe]
Top-down proteoform identification and characterization (common data)
toppred (1.10-9) [universe]
transmembrane topology prediction
tortoize (2.0.5-2) [universe]
Application to calculate ramachandran z-scores
toulbar2 (1.1.1+dfsg-1) [universe]
Exact combinatorial optimization for Graphical Models
toulbar2-doc (1.1.1+dfsg-1) [universe]
Exact combinatorial optimization for Graphical Models - documentation
trace2dbest (3.0.1-2) [universe]
bulk submission of chromatogram data to dbEST
trace2dbest-doc (3.0.1-2) [universe]
Documentation and sample files for trace2dbest
tracetuner (3.0.6~beta+dfsg-3) [universe]
interpretation of DNA Sanger sequencing data
transcalc (0.14-7) [universe]
microwave and RF transmission line calculator
transdecoder (5.0.1-5) [universe]
find coding regions within RNA transcript sequences
transfuse (0.5.7-1build2) [universe]
Runs formatted documents through transformations/translation
transrate-tools (1.0.0-4) [universe]
helper for transrate
transtermhp (2.09-5) [universe]
find rho-independent transcription terminators in bacterial genomes
travis (210521-1) [universe]
trajectory analyzer and visualizer
tree-ppuzzle (5.3~rc16+dfsg-9) [universe]
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.3~rc16+dfsg-9) [universe]
Reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle-doc (5.3~rc16+dfsg-9) [universe]
Reconstruction of phylogenetic trees by maximum likelihood (doc)
treeview (1.2.0+dfsg-1) [multiverse]
Java re-implementation of Michael Eisen's TreeView
treeviewx (0.5.1+git20100823.7e4d0e9-3) [universe]
Displays and prints phylogenetic trees
trf (4.09.1-5) [universe]
locate and display tandem repeats in DNA sequences
trf-examples (4.09.1-5) [universe]
locate and display tandem repeats in DNA sequences (examples)
triangle-bin (1.6-4) [multiverse]
High-quality 2-D mesh generator binary programs
trim-galore (0.6.7-1) [universe]
automate quality and adapter trimming for DNA sequencing
trimmomatic (0.39+dfsg-2) [universe]
flexible read trimming tool for Illumina NGS data
trinculo (0.96+dfsg-4) [universe]
toolkit to carry out genetic association for multi-category phenotypes
trinityrnaseq (2.13.2+dfsg-3) [universe]
RNA-Seq De novo Assembly
trinityrnaseq-examples (2.13.2+dfsg-3) [universe]
RNA-Seq De novo Assembly common example and testing files
trnascan-se (2.0.9+ds-1) [multiverse]
detection of transfer RNA genes in genomic sequence
trnascan-se-common (2.0.9+ds-1) [multiverse]
detection of transfer RNA genes in genomic sequence (common files)
tunnelx (20190701-1) [universe]
Cave Survey drawing software
tvc (5.0.3+git20151221.80e144e+dfsg-4build1) [universe]
genetic variant caller for Ion Torrent sequencing platforms
twms (0.07z+git20201202+bb7c3f8-1) [universe]
tiny web map service
ubertooth (2018.12.R1-5) [universe]
2.4 GHz wireless development platform for Bluetooth experimentation
ubertooth-firmware (2018.12.R1-5) [universe]
Firmware for Ubertooth
ubertooth-firmware-source (2018.12.R1-5) [universe]
Source code for the Ubertooth firmware
uc-echo (1.12-16) [universe]
error correction algorithm designed for short-reads from NGS
ucto (0.21.1-2build2) [universe]
Unicode Tokenizer
uctodata (0.8-2) [universe]
Data files for Ucto
ucx-utils (1.12.1~rc2-1) [universe]
Utilities for the UCX messaging library
ugene (34.0+dfsg-2) [multiverse]
integrated bioinformatics toolkit
ugene-data (34.0+dfsg-2) [multiverse]
required data for UGENE - integrated bioinformatics toolkit
uhd-doc (4.1.0.5-3) [universe]
universal hardware driver for Ettus Research products - doc
uhd-host (4.1.0.5-3) [universe]
universal hardware driver for Ettus Research products - host apps
umap-learn (0.4.5+dfsg-2) [universe]
Uniform Manifold Approximation and Projection
umis (1.0.8-1build1) [universe]
tools for processing UMI RNA-tag data
umis-examples (1.0.8-1build1) [universe]
tools for processing UMI RNA-tag data (examples)
uncalled (2.2+ds1-1build1) [universe]
Utility for Nanopore Current Alignment to Large Expanses of DNA
unicycler (0.4.8+dfsg-2build1) [universe]
hybrid assembly pipeline for bacterial genomes
unicycler-data (0.4.8+dfsg-2build1) [universe]
hybrid assembly pipeline for bacterial genomes (data package)
unikmer (0.18.8-1) [universe]
Toolkit for nucleic acid k-mer analysis
units-filter (4.2-3) [universe]
Parser for expressions concerning physical values
units-master (4.2-3) [universe]
Powerful units converter with a GUI
v-sim (3.7.2-8build7) [universe]
Visualize atomic structures
v-sim-common (3.7.2-8build7) [universe]
Visualize atomic structures (support files)
v-sim-plugins (3.7.2-8build7) [universe]
Plugins for V_Sim (a 3D visualization package)
varna (3-93+ds-3) [universe]
Visualization Applet for RNA
varscan (2.4.3+dfsg-4) [multiverse]
variant detection in next-generation sequencing data
vcfanno (0.3.3+ds-1) [universe]
annotate a VCF with other VCFs/BEDs/tabixed files
vcfanno-examples (0.3.3+ds-1) [universe]
examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files
vcftools (0.1.16-3) [universe]
Collection of tools to work with VCF files
vdjtools (1.2.1+git20190311-6) [multiverse]
framework for post-analysis of B/T cell repertoires
velvet (1.2.10+dfsg1-7) [universe]
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg1-7) [universe]
Example data for the Velvet sequence assembler
velvet-long (1.2.10+dfsg1-7) [universe]
Nucleic acid sequence assembler for very short reads, long version
velvet-tests (1.2.10+dfsg1-7) [universe]
Test data for the Velvet sequence assembler
velvetoptimiser (2.2.6-4) [universe]
automatically optimise Velvet do novo assembly parameters
veusz (3.3.1-3build1) [universe]
2D and 3D scientific plotting application with graphical interface
vg (1.30.0+ds-1) [universe]
tools for working with genome variation graphs
vg-docs (1.30.0+ds-1) [universe]
tools for working with genome variation graphs -- docs
vienna-rna (2.4.17+dfsg-2build2) [multiverse]
RNA sequence analysis
viewmol (2.4.1-26ubuntu1) [universe]
graphical front end for computational chemistry programs
virulencefinder (2.0.4-2) [universe]
identify virulence genes in total or partial sequenced isolates of bacteria
virulencefinder-examples (2.0.4-2) [universe]
example data for virulencefinder
visp-images-data (3.5.0-1) [universe]
visual servoing library - dataset reference files
vistrails (3.0~git+9dc22bd-2build1) [universe]
Science visualisation workflow toolkit
vmatch (2.3.1+dfsg-7) [universe]
large scale sequence analysis software
voro++ (0.5+revert-to-0.4.6+dfsg1-1) [universe]
library for the computation of the Voronoi diagram
voro++-examples (0.5+revert-to-0.4.6+dfsg1-1) [universe]
library for the computation of the Voronoi diagram (examples)
voronota (1.22.3149-1) [universe]
Voronoi diagram-based tool to find atom contacts
votca-csg (2021.2-1) [universe]
VOTCA's coarse-graining engine
votca-csg-scripts (2021.2-1) [universe]
VOTCA's coarse-graining scripts
votca-csg-tutorials (2021.2-1) [universe]
VOTCA's coarse-graining tutorials
votca-tools (2021.2-1) [universe]
VOTCA's tools library, helper binaries
votca-xtp (2021.2-1ubuntu1) [universe]
VOTCA's exciton transport engine
votca-xtp-tutorials (2021.2-1ubuntu1) [universe]
VOTCA's coarse-graining tutorials
vowpal-wabbit (8.6.1.dfsg1-1build3) [universe]
fast and scalable online machine learning algorithm
vsearch (2.21.1-1) [universe]
tool for processing metagenomic sequences
vsearch-examples (2.21.1-1) [universe]
Test Data for vsearch tool for processing metagenomic sequences
vt (0.57721+ds-3) [universe]
toolset for short variant discovery in genetic sequence data
vt-examples (0.57721+ds-3) [universe]
toolset for short variant discovery in genetic sequence data (examples)
wannier90 (3.1.0+ds-7) [universe]
Maximally Localized Wannier Functions - executables
wannier90-data (3.1.0+ds-7) [universe]
Maximally Localized Wannier Functions - documentation and examples
wcslib-tools (7.7+ds-1) [universe]
Command line tools utilizing wcslib
wcstools (3.9.6-1) [universe]
Handle the WCS of a FITS image
weightwatcher (1.12+dfsg-2) [universe]
Combine maps and polygon data for astronomical image processing
weka (3.6.14-3) [universe]
Machine learning algorithms for data mining tasks
wham-align (0.1.5-8) [universe]
Wisconsin's High-Throughput Alignment Method
wigeon (20101212+dfsg1-5) [universe]
reimplementation of the Pintail 16S DNA anomaly detection utility
wise (2.4.1-23) [universe]
comparison of biopolymers, like DNA and protein sequences
wsclean (3.0-2build2) [universe]
Fast generic widefield interferometric imager
wtdbg2 (2.5-8) [universe]
de novo sequence assembler for long noisy reads
wtdbg2-examples (2.5-8) [universe]
Examples for wtdbg - de novo sequence assembler
wxastrocapture (1.8.1+git20140821.796e1a1+dfsg-1build1) [universe]
Windows linuX Astronomy Capture
x13as (1.1-b58-1) [multiverse]
seasonal adjustment software for modeling time series
xbs (0-11) [universe]
3-d models and movies of molecules
xcas (1.7.0.39+dfsg2-1build2) [universe]
Computer Algebra System - console and graphical calculator
xcrysden (1.6.2-4) [universe]
Crystalline and Molecular Structure Visualizer
xcrysden-data (1.6.2-4) [universe]
Crystalline and Molecular Structure Visualizer (Data Files)
xdrawchem (1:1.11.0-3) [universe]
Chemical structures and reactions editor
xeus-python-dev (0.12.5-1build1) [universe]
Native jupyter kernel for python (headers)
xfoil (6.99.dfsg+1-3) [universe]
program for the design and analysis of subsonic airfoils
xgboost (1.5.2-1) [universe]
Scalable and Flexible Gradient Boosting (Executable)
xgterm (2.1+dfsg-1) [universe]
Terminal emulator to work with IRAF
ximtool (2.1+dfsg-1) [universe]
Interactive image display program for the X Window System
xmakemol (5.16-10) [universe]
program for visualizing atomic and molecular systems
xmakemol-gl (5.16-10) [universe]
program for visualizing atomic and molecular systems (OpenGL)
xmds2 (3.1.0+dfsg-3) [universe]
eXtensible Multi-Dimensional Simulator
xmpsolve (3.2.1-5) [universe]
Multiprecision polynomial solver (graphical version)
xpa-tools (2.1.20-1) [universe]
Tools for seamless communication between Unix programs
xplot (1.19-9build2) [universe]
simple on-screen x-y column data plotter
xplot-xplot.org (0.90.7.1-4) [universe]
fast tool to graph and visualize lots of data
xpore (2.1-1) [universe]
Nanopore analysis of differential RNA modifications
xppaut (6.11b+1.dfsg-1.1) [universe]
Phase Plane Plus Auto: Solves many kinds of equations
xpython (0.12.5-1build1) [universe]
Native jupyter kernel for python (binary)
xtide (2.15.2-1.1) [universe]
provides tide and current predictions
xtide-coastline (20020202-1.2) [universe]
coastline data for xtide
xtide-data (20191229-1.1) [universe]
Harmonics data for xtide
xtide-data-nonfree (20100529-1.1) [multiverse]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xtpcpp (0.4.51-1) [universe]
C++ version of X!TandemPipeline
xtpcpp-tandemwrapper (0.4.51-1) [universe]
X!Tandem wrapper for timsTOF pro and modern mzML data
xyscan (4.61-1) [universe]
data thief for scientists
yade (2022.01a-7) [universe]
Platform for discrete element modeling
yagv (0.4~20171211.r234ef16+dfsg-2) [universe]
yet another G-code viewer
yaha (0.1.83-3) [universe]
find split-read mappings on single-end queries
yanagiba (1.0.0-5) [universe]
filter low quality Oxford Nanopore reads basecalled with Albacore
yanosim (0.1-4) [universe]
read simulator nanopore DRS datasets
yorick-av (0.0.6-1) [universe]
write movies from Yorick in various formats
yorick-full (2.2.04+dfsg1+full) [universe]
full installation of the Yorick interpreter and add-ons
yorick-gy (0.0.5-2) [universe]
GObject introspection and Gtk bindings for Yorick
yorick-gyoto (1.4.4-7build1) [universe]
General relativistic geodesic integration for the Yorick language
yorick-mira (1.1.0+git20170124.3bd1c3~dfsg1-2) [universe]
optical interferometry image reconstruction within Yorick
yorick-mpeg (0.1-3) [universe]
MPEG output support for the Yorick language
yorick-mpy-common (2.2.04+dfsg1-12) [universe]
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.04+dfsg1-12) [universe]
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.04+dfsg1-12) [universe]
Message Passing Yorick (OpenMPI build)
yorick-svipc (0.16-5build5) [universe]
interprocess communication (shared memory...) for Yorick
yorick-ygsl (1.2.1-1build3) [universe]
GSL special functions plugin for the Yorick language
yorick-ynfft (1.0.3-1) [universe]
nonequispaced fast Fourier transform for Yorick
z3 (4.8.12-1) [universe]
theorem prover from Microsoft Research
z88 (13.0.0+dfsg2-6) [universe]
Finite Element Analysis Program - runtime
zalign (0.9.1-5) [universe]
parallel local alignment of biological sequences
zegrapher (3.1.1-2) [universe]
plotting mathematical functions and sequences on the plane
ztex-bmp (20120314-2) [universe]
universal macro processor