packages
[ Bron: bioperl-run ]
Pakket: bioperl-run (1.7.3-8) [universe]
Verwijzigingen voor bioperl-run
Ubuntu bronnen:
Het bronpakket bioperl-run downloaden:
Beheerder:
Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.
Original Maintainers (usually from Debian):
- Debian Med Packaging Team (Mailarchief)
- Charles Plessy
- Andreas Tille
- Étienne Mollier
It should generally not be necessary for users to contact the original maintainer.
Externe bronnen:
- Homepage [metacpan.org]
Vergelijkbare pakketten:
BioPerl wrappers: scripts
Andere aan bioperl-run gerelateerde pakketten
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- dep: bioperl (>= 1.7.4)
- Perl tools for computational molecular biology
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- dep: default-jdk-headless
- Standard Java or Java compatible Development Kit (headless)
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- dep: libbio-cluster-perl
- BioPerl cluster modules
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- dep: libbio-eutilities-perl
- BioPerl interface to the Entrez Programming Utilities (E-utilities)
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- dep: libbio-featureio-perl
- Modules for reading, writing, and manipulating sequence features
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- dep: libbio-perl-run-perl (= 1.7.3-8)
- BioPerl wrappers: modules
-
- dep: libbio-tools-run-alignment-clustalw-perl
- Bioperl interface to Clustal W
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- dep: libbio-tools-run-remoteblast-perl
- Object for remote execution of the NCBI Blast via HTTP
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- dep: libtest-requiresinternet-perl
- module to easily test network connectivity
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- rec: amap-align
- Protein multiple alignment by sequence annealing
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- rec: bedtools
- suite of utilities for comparing genomic features
-
- rec: bowtie
- Ultrafast memory-efficient short read aligner
-
- rec: bwa
- Burrows-Wheeler Aligner
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- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
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- rec: emboss
- European molecular biology open software suite
-
- rec: exonerate
- generic tool for pairwise sequence comparison
-
- rec: hmmer
- profile hidden Markov models for protein sequence analysis
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- rec: infernal
- inference of RNA secondary structural alignments
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- rec: kalign
- Global and progressive multiple sequence alignment
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- rec: lagan
- highly parametrizable pairwise global genome sequence aligner
-
- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: maq
- maps short fixed-length polymorphic DNA sequence reads to reference sequences
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- rec: muscle
- Multiple alignment program of protein sequences
-
- rec: ncbi-blast+-legacy
- NCBI Blast legacy call script
-
- rec: ncoils
- coiled coil secondary structure prediction
-
- rec: pal2nal
- converts proteins to genomic DNA alignment
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- rec: pftools
- build and search protein and DNA generalized profiles
-
- rec: phylip
- package of programs for inferring phylogenies
-
- rec: phyml
- Phylogenetic estimation using Maximum Likelihood
-
- rec: primer3
- tool to design flanking oligo nucleotides for DNA amplification
-
- rec: probalign
- multiple sequence alignment using partition function posterior probabilities
-
- rec: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
-
- rec: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: sim4
- tool for aligning cDNA and genomic DNA
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- rec: t-coffee
- Multiple Sequence Alignment
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- rec: tigr-glimmer
- Gene detection in archea and bacteria
-
- rec: wise
- comparison of biopolymers, like DNA and protein sequences
-
- sug: fasta3
- tools for searching collections of biological sequences
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- sug: gmap
- spliced and SNP-tolerant alignment for mRNA and short reads
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- sug: trnascan-se
- detection of transfer RNA genes in genomic sequence