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[ Источник: debian-med  ]

Пакет: med-bio-dev (3.0.1ubuntu1) [universe]

Ссылки для med-bio-dev

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Ресурсы Ubuntu:

Исходный код debian-med:

Сопровождающий:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

It should generally not be necessary for users to contact the original maintainer.

Подобные пакеты:

Debian Med packages for development of bioinformatics applications

Другие пакеты, относящиеся к med-bio-dev

  • зависимости
  • рекомендации
  • предложения
  • enhances
  • dep: med-config (= 3.0.1ubuntu1)
    Debian Med general config package
  • dep: med-tasks (= 3.0.1ubuntu1)
    Debian Med tasks for tasksel
  • rec: bio-tradis
    analyse the output from TraDIS analyses of genomic sequences
  • rec: bioperl
    Perl tools for computational molecular biology
  • rec: bioperl-run
    BioPerl wrappers: scripts
  • rec: biosquid
    utilities for biological sequence analysis
  • rec: libace-perl
    Object-Oriented Access to ACEDB Databases
  • rec: libai-fann-perl
    Perl wrapper for the FANN library
  • rec: libbambamc-dev
    Development files for reading and writing BAM (genome alignment) files
  • rec: libbamtools-dev
    C++ API for manipulating BAM (genome alignment) files
  • rec: libbio-coordinate-perl
    BioPerl modules for working with biological coordinates
  • rec: libbio-das-lite-perl
    implementation of the BioDas protocol
  • rec: libbio-eutilities-perl
    BioPerl interface to the Entrez Programming Utilities (E-utilities)
  • rec: libbio-graphics-perl
    Generate GD images of Bio::Seq objects
  • rec: libbio-mage-perl
    Container module for classes in the MAGE package: MAGE
  • rec: libbio-mage-utils-perl
    Extra modules for classes in the MAGE package: MAGE
  • rec: libbio-primerdesigner-perl
    Perl module to design PCR primers using primer3 and epcr
  • rec: libbiococoa-dev
    Bioinformatics framework for GNUstep and Cocoa (development files)
  • rec: libbiod-dev
    bioinformatics library in D (development files)
  • rec: libbiojava-java
    Java API to biological data and applications (default version)
  • rec: libbiojava4-java
    Java API to biological data and applications (default version)
    также виртуальный пакет, предоставляемый libbiojava4-java
  • rec: libblasr-dev
    tools for aligning PacBio reads to target sequences (development files)
  • rec: libbpp-core-dev
    Bio++ Core library development files
  • rec: libbpp-phyl-dev
    Bio++ Phylogenetic library development files
  • rec: libbpp-phyl-omics-dev
    Bio++ Phylogenetics library: genomics components (development files)
  • rec: libbpp-popgen-dev
    Bio++ Population Genetics library development files
  • rec: libbpp-qt-dev
    Bio++ Qt Graphic classes library development files
  • rec: libbpp-raa-dev
    Bio++ Remote Acnuc Access library development files
  • rec: libbpp-seq-dev
    Bio++ Sequence library development files
  • rec: libbpp-seq-omics-dev
    Bio++ Sequence library: genomics components (development files)
  • rec: libchado-perl
    database schema and tools for genomic data
  • rec: libconsensuscore-dev
    algorithms for PacBio multiple sequence consensus -- development files
  • rec: libdivsufsort-dev
    libdivsufsort header files
  • rec: libfast5-dev
    library for reading Oxford Nanopore Fast5 files -- headers
  • rec: libfastahack-dev
    library for indexing and sequence extraction from FASTA files (devel)
  • rec: libffindex0-dev
    library for simple index/database for huge amounts of small files (development)
  • rec: libfml-dev
    development headers for libfml
  • rec: libfreecontact-dev
    fast protein contact predictor library - development files
    также виртуальный пакет, предоставляемый libfreecontact-dev
  • rec: libfreecontact-perl
    fast protein contact predictor - binding for Perl
  • rec: libgenome-1.3-dev
    toolkit for developing bioinformatic related software (devel)
  • rec: libgenome-model-tools-music-perl
    module for finding mutations of significance in cancer
  • rec: libgenome-perl
    pipelines, tools, and data management for genomics
  • rec: libgenometools0-dev
    development files for GenomeTools
  • rec: libgff-dev
    GFF/GTF parsing from cufflinks as a library
  • rec: libgkarrays-dev
    library to query large collection of NGS sequences (development)
  • rec: libgo-perl
    perl modules for GO and other OBO ontologies
  • rec: libhmsbeagle-dev
    High-performance lib for Bayesian and Maximum Likelihood phylogenetics (devel)
  • rec: libhts-dev
    development files for the HTSlib
  • rec: libhtsjdk-java
    Java API for high-throughput sequencing data (HTS) formats
  • rec: libjebl2-java
    Java Evolutionary Biology Library
  • rec: libjloda-java
    Java library of data structures and algorithms for bioinformatics
  • rec: libkmer-dev
    suite of tools for DNA sequence analysis (development lib)
  • rec: libmems-1.6-dev
    development library to support DNA string matching and comparative genomics
    также виртуальный пакет, предоставляемый libmems-1.6-dev
  • rec: libminimap-dev
    development headers for libminimap
  • rec: libmuscle-3.7-dev
    multiple alignment development library for protein sequences
  • rec: libncbi-vdb-dev
    libraries for using data in the INSDC Sequence Read Archives (devel)
  • rec: libncbi6-dev
    NCBI libraries for biology applications (development files)
  • rec: libncl-dev
    NEXUS Class Library (static lib and header files)
  • rec: libngs-java
    Next Generation Sequencing language Bindings (Java bindings)
  • rec: libngs-sdk-dev
    Next Generation Sequencing language Bindings (development)
  • rec: libnhgri-blastall-perl
    Perl extension for running and parsing NCBI's BLAST 2.x
  • rec: libopenms-dev
    Пакет недоступен
  • rec: libpal-java
    Phylogenetic Analysis Library
  • rec: libpbbam-dev
    Pacific Biosciences binary alignment/map (BAM) library (headers)
  • rec: libpbdata-dev
    tools for handling PacBio sequences (development files)
  • rec: libpbihdf-dev
    tools for handling PacBio hdf5 files (development files)
  • rec: libpbseq-dev
    library for analyzing PacBio sequencing data (development files)
  • rec: libqes-dev
    DNA sequence parsing library -- development
  • rec: librcsb-core-wrapper0-dev
    development files for librcsb-core-wrapper0
  • rec: librdp-taxonomy-tree-java
    taxonomy tree library from Ribosomal Database Project (RDP)
  • rec: librelion-dev
    C++ API for RELION (3D reconstructions in cryo-electron microscopy)
  • rec: librg-blast-parser-perl
    very fast NCBI BLAST parser - binding for Perl
  • rec: librg-reprof-bundle-perl
    protein secondary structure and accessibility predictor (perl module)
  • rec: librostlab-blast0-dev
    very fast C++ library for parsing the output of NCBI BLAST programs (devel)
  • rec: librostlab3-dev
    C++ library for computational biology (development)
  • rec: libsbml5-dev
    System Biology Markup Language library - development files
  • rec: libsmithwaterman-dev
    determine similar regions between two strings or genomic sequences (devel)
  • rec: libsnp-sites1-dev
    Static libraries and header files for the package snp-sites
  • rec: libsort-key-top-perl
    Perl module to select and sort top n elements of a list
  • rec: libsrf-dev
    C++ implementation of the SRF format for DNA sequence data
  • rec: libssm-dev
    macromolecular superposition library - development files
  • rec: libssw-dev
    Development headers and static libraries for libssw
    также виртуальный пакет, предоставляемый libssw-dev
  • rec: libssw-java
    Java bindings for libssw
  • rec: libstaden-read-dev
    development files for libstaden-read
  • rec: libswiss-perl
    Perl API to the UniProt database
  • rec: libtabixpp-dev
    C++ wrapper to tabix indexer (development files)
    также виртуальный пакет, предоставляемый libtabixpp-dev
  • rec: libtfbs-perl
    scanning DNA sequence with a position weight matrix
  • rec: libvcflib-dev
    C++ library for parsing and manipulating VCF files (development)
  • rec: libvibrant6-dev
    NCBI libraries for graphic biology applications (development files)
  • rec: libzerg-perl
    fast perl module for parsing the output of NCBI BLAST programs
  • rec: libzerg0-dev
    development libraries and header files for libzerg
  • rec: mcl
    Markov Cluster algorithm
  • rec: pyfai
    Fast Azimuthal Integration scripts
  • rec: python-biom-format
    Biological Observation Matrix (BIOM) format (Python 2)
  • rec: python-cobra
    constraint-based modeling of biological networks (Python 2)
  • rec: python-cogent
    framework for genomic biology
  • rec: python-corepywrap
    library that exports C++ mmCIF accessors to Python
  • rec: python-freecontact
    fast protein contact predictor - binding for Python
  • rec: python-htseq
    high-throughput genome sequencing read analysis utilities
  • rec: python-kineticstools
    detection of DNA modifications (Python 2 library)
  • rec: python-pbcommand
    common command-line interface for Pacific Biosciences analysis modules
  • rec: python-pbcore
    Python library for processing PacBio data files
  • rec: python-pbh5tools
    tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
  • rec: python-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 2)
  • rec: python-rdkit
    Collection of cheminformatics and machine-learning software
  • rec: python-screed
    Пакет недоступен
  • rec: python3-biomaj3
    BioMAJ workflow management library
    или python-biomaj3
    Пакет недоступен
  • rec: python3-biopython
    Python library for bioinformatics (implemented in Python 3)
    или python-biopython
    Python library for bioinformatics (implemented in Python 2)
  • rec: python3-biotools
    Python3 bioinformatics utilities for high-throughput genomic sequencing
    или python-biotools
    Python bioinformatics utilities for high-throughput genomic sequencing
  • rec: python3-csb
    Python framework for structural bioinformatics (Python3 version)
    или python-csb
    Python framework for structural bioinformatics
  • rec: python3-cutadapt
    Clean biological sequences from high-throughput sequencing reads (Python 3)
    или python-cutadapt
    Clean biological sequences from high-throughput sequencing reads (Python 2)
  • rec: python3-dendropy
    DendroPy Phylogenetic Computing Library (Python 3)
    или python-dendropy
    DendroPy Phylogenetic Computing Library (Python 2)
  • rec: python3-fast5
    library for reading Oxford Nanopore Fast5 files -- Python 3
    или python-fast5
    library for reading Oxford Nanopore Fast5 files -- Python 2
  • rec: python3-gffutils
    Пакет недоступен
  • rec: python3-intervaltree-bio
    Interval tree convenience classes for genomic data -- Python 3 library
    или python-intervaltree-bio
    Interval tree convenience classes for genomic data -- Python 2 library
  • rec: python3-ngs
    Next Generation Sequencing language Bindings (Python3 bindings)
    или python-ngs
    Next Generation Sequencing language Bindings (Python bindings)
  • rec: python3-pbconsensuscore
    algorithms for PacBio multiple sequence consensus -- Python 3
    или python-pbconsensuscore
    algorithms for PacBio multiple sequence consensus -- Python 2
  • rec: python3-pybedtools
    Пакет недоступен
  • rec: python3-pyfaidx
    efficient random access to fasta subsequences for Python 3
    или python-pyfaidx
    efficient random access to fasta subsequences for Python
  • rec: python3-pymummer
    Python 3 interface to MUMmer
  • rec: python3-pyvcf
    Variant Call Format (VCF) parser for Python 3
    или python-pyvcf
    Variant Call Format (VCF) parser for Python
  • rec: python3-ruffus
    Python3 computation pipeline library widely used in bioinformatics
    или python-ruffus
    Python computation pipeline library widely used in bioinformatics
  • rec: python3-skbio
    Python3 data structures, algorithms, educational resources for bioinformatic
  • rec: r-bioc-biobase
    base functions for Bioconductor
  • rec: r-cran-genetics
    GNU R package for population genetics
  • rec: r-cran-haplo.stats
    GNU R package for haplotype analysis
  • rec: r-cran-phylobase
    GNU R base package for phylogenetic structures and comparative data
  • rec: r-cran-rncl
    GNU R interface to the Nexus Class Library
  • rec: r-cran-rnexml
    GNU R package for semantically rich I/O for the 'NeXML' format
  • rec: ruby-bio
    Ruby tools for computational molecular biology
  • rec: ruby-crb-blast
    Run conditional reciprocal best blast
  • rec: sbmltoolbox
    libsbml toolbox for octave and matlab
  • rec: seqan-dev
    C++ library for the analysis of biological sequences (development)
  • sug: bioclipse
    Пакет недоступен
  • sug: libbam-dev
    manipulates nucleotide sequence alignments in BAM or SAM format
  • sug: libdisorder-dev
    library for entropy measurement of byte streams (devel)
  • sug: libforester-java
    Пакет недоступен
  • sug: libfreecontact-doc
    documentation for libfreecontact
  • sug: libgff-perl
    Пакет недоступен
  • sug: libgtextutils-dev
    Gordon Text_utils library (development files)
  • sug: libpbcopper-dev
    data structures, algorithms, and utilities for C++ applications -- header files
  • sug: libqcpp-dev
    Пакет недоступен
  • sug: libroadrunner-dev
    Пакет недоступен
  • sug: librostlab-blast-doc
    very fast C++ library for parsing the output of NCBI BLAST programs (doc)
  • sug: librostlab-doc
    C++ library for computational biology (documentation)
  • sug: libseqlib-dev
    C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
  • sug: libswarm2-dev
    Пакет недоступен
  • sug: mgltools-networkeditor
    Python GUI library for the editing of networks
  • sug: mgltools-pybabel
    molecular structure file access and interpretation
  • sug: mgltools-vision
    Python-based Visual Programming Environment
  • sug: octace-bioinfo
    Пакет недоступен
  • sug: octave-bioinfo
    Пакет недоступен
  • sug: python-bd2k
    utilities for BD2KGenomics (Python 2)
  • sug: python-biopython-doc
    Documentation for the Biopython library
  • sug: python-bx
    Пакет недоступен
  • sug: python-consensuscore2
    Пакет недоступен
  • sug: python-hyphy
    Пакет недоступен
  • sug: python-misopy
    Пакет недоступен
  • sug: python-mmtk
    Пакет недоступен
  • sug: python-pyfasta
    Пакет недоступен
  • sug: python-pyflow
    lightweight parallel task engine for Python
  • sug: python-roadrunner
    Пакет недоступен
  • sug: python3-bd2k
    Пакет недоступен
  • sug: python3-biopython-sql
    Biopython support for the BioSQL database schema (Python 3)
    или python-biopython-sql
    Biopython support for the BioSQL database schema (Python 2)
  • sug: python3-bx
    Пакет недоступен
  • sug: python3-consensuscore2
    Пакет недоступен
  • sug: python3-hyphy
    Пакет недоступен
  • sug: python3-misopy
    Пакет недоступен
  • sug: python3-pyfasta
    Пакет недоступен
  • sug: r-bioc-affy
    BioConductor methods for Affymetrix Oligonucleotide Arrays
  • sug: r-bioc-affyio
    BioConductor tools for parsing Affymetrix data files
  • sug: r-bioc-altcdfenvs
    BioConductor alternative CDF environments
  • sug: r-bioc-annotationdbi
    GNU R Annotation Database Interface for BioConductor
  • sug: r-bioc-biocgenerics
    generic functions for Bioconductor
  • sug: r-bioc-biomart
    GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
  • sug: r-bioc-biomformat
    GNU R interface package for the BIOM file format
  • sug: r-bioc-biovizbase
    GNU R basic graphic utilities for visualization of genomic data
  • sug: r-bioc-bsgenome
    BioConductor infrastructure for Biostrings-based genome data packages
  • sug: r-bioc-genomeinfodb
    BioConductor utilities for manipulating chromosome identifiers
  • sug: r-bioc-genomicalignments
    BioConductor representation and manipulation of short genomic alignments
  • sug: r-bioc-genomicfeatures
    GNU R tools for making and manipulating transcript centric annotations
  • sug: r-bioc-genomicranges
    BioConductor representation and manipulation of genomic intervals
  • sug: r-bioc-graph
    handle graph data structures for BioConductor
  • sug: r-bioc-hypergraph
    BioConductor hypergraph data structures
  • sug: r-bioc-iranges
    GNU R low-level containers for storing sets of integer ranges
  • sug: r-bioc-makecdfenv
    BioConductor CDF Environment Maker
  • sug: r-bioc-preprocesscore
    BioConductor collection of pre-processing functions
  • sug: r-bioc-rbgl
    R interface to the graph algorithms contained in the BOOST library
  • sug: r-bioc-rsamtools
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • sug: r-bioc-shortread
    GNU R classes and methods for high-throughput short-read sequencing data
  • sug: r-bioc-snpstats
    BioConductor SnpMatrix and XSnpMatrix classes and methods
  • sug: r-bioc-variantannotation
    BioConductor annotation of genetic variants
  • sug: r-bioc-xvector
    BioConductor representation and manpulation of external sequences
  • sug: r-cran-natserv
    GNU R 'NatureServe' Interface
  • sug: r-cran-rentrez
    GNU R interface to the NCBI's EUtils API
  • sug: r-cran-rocr
    GNU R package to prepare and display ROC curves
  • sug: ruby-rgfa
    parse, edit and write GFA format graphs in Ruby

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