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[ Source: bioperl-run  ]

Пакунок: bioperl-run (1.7.2-3) [universe]

Links for bioperl-run


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Download Source Package bioperl-run:


Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Charles Plessy
  • Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Similar packages:

BioPerl wrappers: scripts

Інші пакунки пов'язані з bioperl-run

  • depends
  • recommends
  • suggests
  • enhances
  • dep: bioperl
    Perl tools for computational molecular biology
  • dep: libbio-perl-run-perl (= 1.7.2-3)
    BioPerl wrappers: modules
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • rec: amap-align
    Protein multiple alignment by sequence annealing
  • rec: bedtools
    suite of utilities for comparing genomic features
  • rec: blast2
    transitional dummy package to ncbi-blast+-legacy
  • rec: bowtie
    Ultrafast memory-efficient short read aligner
  • rec: bwa
    Burrows-Wheeler Aligner
  • rec: clustalw
    global multiple nucleotide or peptide sequence alignment
  • rec: emboss
    European molecular biology open software suite
  • rec: exonerate
    generic tool for pairwise sequence comparison
  • rec: hmmer
    profile hidden Markov models for protein sequence analysis
  • rec: hyphy-mpi
    Hypothesis testing using Phylogenies (MPI version)
  • rec: infernal
    inference of RNA secondary structural alignments
  • rec: kalign
    Global and progressive multiple sequence alignment
  • rec: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • rec: maq
    maps short fixed-length polymorphic DNA sequence reads to reference sequences
  • rec: muscle
    Multiple alignment program of protein sequences
  • rec: phylip
    package of programs for inferring phylogenies
  • rec: phyml
    Phylogenetic estimation using Maximum Likelihood
  • rec: primer3
    tool to design flanking oligo nucleotides for DNA amplification
  • rec: probalign
    multiple sequence alignment using partition function posterior probabilities
  • rec: probcons
    PROBabilistic CONSistency-based multiple sequence alignment
  • rec: raxml
    Randomized Axelerated Maximum Likelihood of phylogenetic trees
  • rec: samtools
    processing sequence alignments in SAM and BAM formats
  • rec: sim4
    tool for aligning cDNA and genomic DNA
  • rec: t-coffee
    Multiple Sequence Alignment
  • rec: tigr-glimmer
    Gene detection in archea and bacteria
  • rec: wise
    comparison of biopolymers, like DNA and protein sequences
  • sug: gmap
    spliced and SNP-tolerant alignment for mRNA and short reads
  • sug: paml
    Phylogenetic Analysis by Maximum Likelihood (PAML)

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