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[ 源代码: debian-med  ]

软件包: med-cloud (2.1ubuntu4) [universe]

med-cloud 的相关链接


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下载源码包 debian-med:


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Original Maintainers (usually from Debian):

It should generally not be necessary for users to contact the original maintainer.


Debian Med bioinformatics applications usable in cloud computing

其他与 med-cloud 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • enhances
  • dep: med-config (= 2.1ubuntu4)
    Debian Med general config package
  • dep: med-tasks (= 2.1ubuntu4)
    Debian Med tasks for tasksel
  • rec: acedb-other
    retrieval of DNA or protein sequences
  • rec: aevol
    digital genetics model to run Evolution Experiments in silico
  • rec: alien-hunter
    Interpolated Variable Order Motifs to identify horizontally acquired DNA
  • rec: altree
    program to perform phylogeny-based association and localization analysis
  • rec: amap-align
    Protein multiple alignment by sequence annealing
  • rec: ampliconnoise
    removal of noise from 454 sequenced PCR amplicons
  • rec: anfo
    Short Read Aligner/Mapper from MPG
  • rec: aragorn
    tRNA and tmRNA detection in nucleotide sequences
  • rec: arden
    specificity control for read alignments using an artificial reference
  • rec: autodock
    analysis of ligand binding to protein structure
  • rec: autodock-vina
    docking of small molecules to proteins
  • rec: autogrid
    pre-calculate binding of ligands to their receptor
  • rec: bamtools
    toolkit for manipulating BAM (genome alignment) files
  • rec: bedtools
    suite of utilities for comparing genomic features
  • rec: biomaj
    biological data-bank updater
  • rec: bioperl
    Perl tools for computational molecular biology
  • rec: bioperl-run
    BioPerl wrappers: scripts
  • rec: biosquid
    utilities for biological sequence analysis
  • rec: blast2
    Basic Local Alignment Search Tool
  • rec: bowtie
    Ultrafast memory-efficient short read aligner
  • rec: bowtie2
    ultrafast memory-efficient short read aligner
  • rec: boxshade
    Pretty-printing of multiple sequence alignments
  • rec: bwa
    Burrows-Wheeler Aligner
  • rec: cain
    simulations of chemical reactions
  • rec: cassiopee
    index and search tool in genomic sequences
  • rec: cd-hit
    suite of programs designed to quickly group sequences
  • rec: cdbfasta
    Constant DataBase indexing and retrieval tools for multi-FASTA files
  • rec: circos
    plotter for visualizing data
  • rec: clearcut
    extremely efficient phylogenetic tree reconstruction
  • rec: clonalframe
    inference of bacterial microevolution using multilocus sequence data
  • rec: concavity
    predictor of protein ligand binding sites from structure and conservation
  • rec: datamash
    statistics tool for command-line interface
  • rec: discosnp
    discovering Single Nucleotide Polymorphism from raw set(s) of reads
  • rec: disulfinder
    cysteines disulfide bonding state and connectivity predictor
  • rec: dnaclust
    tool for clustering millions of short DNA sequences
  • rec: dssp
    protein secondary structure assignment based on 3D structure
  • rec: fastdnaml
    Tool for construction of phylogenetic trees of DNA sequences
  • rec: fastlink
    faster version of pedigree programs of Linkage
  • rec: fastqc
    quality control for high throughput sequence data
  • rec: fasttree
    phylogenetic trees from alignments of nucleotide or protein sequences
  • rec: fastx-toolkit
    FASTQ/A short nucleotide reads pre-processing tools
  • rec: filo
    FILe and stream Operations
  • rec: fitgcp
    fitting genome coverage distributions with mixture models
  • rec: flexbar
    flexible barcode and adapter removal for sequencing platforms
  • rec: freecontact
    fast protein contact predictor
  • rec: gasic
    genome abundance similarity correction
  • rec: genometools
    versatile genome analysis toolkit
  • rec: giira
    RNA-Seq driven gene finding incorporating ambiguous reads
  • rec: grinder
    Versatile omics shotgun and amplicon sequencing read simulator
  • rec: idba
    iterative De Bruijn Graph De Novo short read assembler for transcriptome
  • rec: infernal
    inference of RNA secondary structural alignments
  • rec: kissplice
    Detection of various kinds of polymorphisms in RNA-seq data
  • rec: last-align
    genome-scale comparison of biological sequences
  • rec: loki
    MCMC linkage analysis on general pedigrees
  • rec: macs
    Model-based Analysis of ChIP-Seq on short reads sequencers
  • rec: mapsembler2
  • rec: maq
    maps short fixed-length polymorphic DNA sequence reads to reference sequences
  • rec: melting
    compute the melting temperature of nucleic acid duplex
  • rec: minia
    short-read biological sequence assembler
  • rec: mipe
    Tools to store PCR-derived data
  • rec: mira-assembler
    Whole Genome Shotgun and EST Sequence Assembler
  • rec: mothur
    sequence analysis suite for research on microbiota
  • rec: ncbi-epcr
    Tool to test a DNA sequence for the presence of sequence tagged sites
  • rec: ncbi-tools-bin
    NCBI libraries for biology applications (text-based utilities)
  • rec: ncoils
    coiled coil secondary structure prediction
  • rec: parsinsert
    Parsimonious Insertion of unclassified sequences into phylogenetic trees
  • rec: perm
    efficient mapping of short reads with periodic spaced seeds
  • rec: phyml
    Phylogenetic estimation using Maximum Likelihood
  • rec: phyutility
    simple analyses or modifications on both phylogenetic trees and data matrices
  • rec: picard-tools
    Command line tools to manipulate SAM and BAM files
  • rec: plink
    whole-genome association analysis toolset
  • rec: primer3
    Tool to design flanking oligo nucleotides for DNA amplification
  • rec: python-cogent
    framework for genomic biology
  • rec: rnahybrid
    Fast and effective prediction of microRNA/target duplexes
  • rec: rtax
    Classification of sequence reads of 16S ribosomal RNA gene
  • rec: samtools
    processing sequence alignments in SAM and BAM formats
  • rec: smalt
    Sequence Mapping and Alignment Tool
  • rec: ssake
    genomics application for assembling millions of very short DNA sequences
  • rec: tophat
    fast splice junction mapper for RNA-Seq reads
  • rec: velvet
    Nucleic acid sequence assembler for very short reads
  • sug: abyss
    de novo, parallel, sequence assembler for short reads
  • sug: bagpipe
  • sug: cufflinks

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