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[ Source: tophat  ]

Package: tophat (2.1.1+dfsg1-1) [universe]

Links for tophat


Ubuntu Resources:

Download Source Package tophat:


Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Carlos Borroto
  • Alexandre Mestiashvili
  • Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Similar packages:

fast splice junction mapper for RNA-Seq reads

Other Packages Related to tophat

  • depends
  • recommends
  • suggests
  • enhances
  • dep: bowtie2
    ultrafast memory-efficient short read aligner
    or bowtie
    Ultrafast memory-efficient short read aligner
  • dep: libboost-system1.65.1
    Operating system (e.g. diagnostics support) library
  • dep: libboost-thread1.65.1
    portable C++ multi-threading
  • dep: libc6 (>= 2.15) [amd64, s390x]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.17) [arm64, ppc64el]
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: samtools (>= 1.5)
    processing sequence alignments in SAM and BAM formats
  • dep: zlib1g (>= 1:
    compression library - runtime
  • sug: cufflinks
    Transcript assembly, differential expression and regulation for RNA-Seq

Download tophat

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 659.8 kB3,807.0 kB [list of files]
arm64 594.0 kB3,566.0 kB [list of files]
ppc64el 726.6 kB5,424.0 kB [list of files]
s390x 598.2 kB4,066.0 kB [list of files]