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[ Source: augustus  ]

Links for augustus

Ubuntu Resources:

• Bug Reports
• Ubuntu Changelog
• Copyright File

Download Source Package augustus:

• [augustus_3.4.0+dfsg2-3build1.dsc]
• [augustus_3.4.0+dfsg2.orig.tar.xz]
• [augustus_3.4.0+dfsg2-3build1.debian.tar.xz]

Maintainer:

• Ubuntu Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

• Debian Med Packaging Team (Mail Archive)
• Sascha Steinbiss

It should generally not be necessary for users to contact the original maintainer.

External Resources:

• Homepage [bioinf.uni-greifswald.de]

Similar packages:

• r-cran-pec
• r-bioc-titancna
• transtermhp
• trnascan-se
• genomethreader
• toppred
• trnascan-se-common
• barrnap
• psortb
• voacapl
• ncoils

Other Packages Related to augustus

depends

recommends

suggests

enhances

• dep: augustus-data

  data files for AUGUSTUS

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams Library

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries

• dep: libcolamd2 (>= 1:4.5.2)

  column approximate minimum degree ordering library for sparse matrices

• dep: libgcc-s1 (>= 3.3.1)

  GCC support library

• dep: libgsl27 (>= 2.7.1)

  GNU Scientific Library (GSL) -- library package

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libmysql++3v5 (>= 3.2.5-1~)

  MySQL C++ library bindings (runtime)

• dep: libmysqlclient21 (>= 8.0.11)

  MySQL database client library

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 shared library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• sug: cdbfasta

  Constant DataBase indexing and retrieval tools for multi-FASTA files

• sug: diamond-aligner

  accelerated BLAST compatible local sequence aligner

• sug: libdbd-mysql-perl

  Perl5 database interface to the MariaDB/MySQL database

• sug: libfile-which-perl

  Perl module for searching paths for executable programs

• sug: libparallel-forkmanager-perl

  simple parallel processing fork manager for Perl

• sug: libyaml-perl

  YAML Ain't Markup Language

• sug: python3-biopython

  Python3 library for bioinformatics

Download augustus

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	1,606.8 kB	5,987.0 kB	[list of files]