Package: paleomix (1.3.8-2) [universe]

Links for paleomix

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dep: adapterremoval

rapid adapter trimming, identification, and read merging of gene sequences
dep: bcftools

genomic variant calling and manipulation of VCF/BCF files
dep: bedtools

suite of utilities for comparing genomic features
dep: bowtie2

ultrafast memory-efficient short read aligner
dep: bwa

Burrows-Wheeler Aligner
dep: examl

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
dep: mafft

Multiple alignment program for amino acid or nucleotide sequences
dep: mapdamage

tracking and quantifying damage patterns in ancient DNA sequences
dep: phylip

package of programs for inferring phylogenies
dep: picard-tools

Command line tools to manipulate SAM and BAM files
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-coloredlogs

colored terminal output for Python 3's logging module
dep: python3-configargparse

replacement for argparse with config files and environment variables
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-ruamel.yaml

Roundtrip YAML parser/emitter (Python 3 module)
dep: python3-setproctitle

Setproctitle implementation for Python 3
dep: r-base-core

GNU R core of statistical computation and graphics system
dep: radiant

explore hierarchical metagenomic data with zoomable pie charts
dep: raxml

Randomized Axelerated Maximum Likelihood of phylogenetic trees
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	948.4 kB	1,992.0 kB	[list of files]
arm64	948.4 kB	1,992.0 kB	[list of files]