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[ Source: parsnp  ]

Links for parsnp

Ubuntu Resources:

• Bug Reports
• Ubuntu Changelog
• Copyright File

Download Source Package parsnp:

• [parsnp_2.1.3+dfsg-1.dsc]
• [parsnp_2.1.3+dfsg.orig.tar.xz]
• [parsnp_2.1.3+dfsg-1.debian.tar.xz]

Maintainer:

• Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

• Debian Med Packaging Team (Mail Archive)
• Andreas Tille
• Étienne Mollier

It should generally not be necessary for users to contact the original maintainer.

External Resources:

• Homepage [harvest.readthedocs.org]

Similar packages:

• snippy-examples
• mauve-aligner
• progressivemauve
• maffilter
• maffilter-examples
• bamtools
• libbamtools-dev
• libbamtools2.5.1
• libbamtools2.5.2
• libbamtools2.5.3
• fastani

Other Packages Related to parsnp

depends

recommends

suggests

enhances

• dep: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• dep: harvest-tools

  archiving and postprocessing for reference-compressed genomic multi-alignments

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries

• dep: libgcc-s1 (>= 3.3.1) [not armhf, riscv64]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libmuscle1 (>= 3.7+4565)

  multiple alignment library for protein sequences

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: phipack

  PHI test and other tests of recombination

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-numpy

  Python library for numerical computations (Python 3)

• dep: python3-pyspoa

  Python bindings to spoa

• dep: python3-tqdm

  fast, extensible progress bar for Python 3 and CLI tool

• dep: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• dep: time

  GNU time program for measuring CPU resource usage

• rec: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

Download parsnp

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	202.8 kB	1,907.0 kB	[list of files]
arm64	199.3 kB	1,883.0 kB	[list of files]
armhf	204.1 kB	1,882.0 kB	[list of files]
ppc64el	223.3 kB	1,947.0 kB	[list of files]
riscv64	239.6 kB	1,891.0 kB	[list of files]
s390x	191.1 kB	1,887.0 kB	[list of files]