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Source Package: trinityrnaseq (2.13.2+dfsg-3) [universe]

Links for trinityrnaseq

Ubuntu Resources:

Maintainer:

Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

Debian Med Packaging Team (Mail Archive)
Michael R. Crusoe

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Homepage [trinityrnaseq.github.io]

The following binary packages are built from this source package:

trinityrnaseq: RNA-Seq De novo Assembly
trinityrnaseq-examples: RNA-Seq De novo Assembly common example and testing files

Other Packages Related to trinityrnaseq

build-depends

build-depends-indep

adep: debhelper-compat (= 13)

Package not available
adep: jellyfish

count k-mers in DNA sequences
adep: libjung-free-java (>= 2.1.1-1)

Java Universal Network/Graph Framework
adep: javahelper

Helper scripts for packaging Java programs
adep: libgetopt-java

GNU getopt - Java port
adep: default-jdk

Standard Java or Java compatible Development Kit
adep: parafly

parallel command processing using OpenMP
adep: libjs-jquery

JavaScript library for dynamic web applications
adep: jaligner

Smith-Waterman algorithm with Gotoh's improvement
adep: libhts-dev

development files for the HTSlib
adep: bowtie2

ultrafast memory-efficient short read aligner
adep: salmon

wicked-fast transcript quantification from RNA-seq data
adep: zlib1g-dev

compression library - development
adep: cmake

cross-platform, open-source make system
adep: r-bioc-edger

Empirical analysis of digital gene expression data in R
adep: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
adep: r-bioc-rots

GNU R Teproducibility-Optimized Test Statistic
adep: r-cran-fastcluster

Fast hierarchical clustering routines for GNU R
adep: liburi-perl

module to manipulate and access URI strings
adep: r-cran-ape

GNU R package for Analyses of Phylogenetics and Evolution
adep: r-bioc-ctc

Cluster and Tree Conversion
adep: r-cran-gplots

GNU R package with tools for plotting data by Greg Warnes et al
adep: r-cran-readr

GNU R package to read rectangular text data
adep: r-bioc-biobase

base functions for Bioconductor
adep: r-bioc-qvalue

GNU R package for Q-value estimation for FDR control
adep: r-bioc-goseq

GNU R gene ontology analyser for RNA-seq and other length biased data
adep: r-bioc-tximport

transcript-level estimates for biological sequencing
adep: python3-htseq

Python3 high-throughput genome sequencing read analysis utilities
adep: rna-star

ultrafast universal RNA-seq aligner
adep: picard-tools

Command line tools to manipulate SAM and BAM files
adep: gmap

spliced and SNP-tolerant alignment for mRNA and short reads
adep: hisat2

graph-based alignment of short nucleotide reads to many genomes
adep: subread

toolkit for processing next-gen sequencing data
adep: kallisto

near-optimal RNA-Seq quantification
adep: python3-hisat2

Python scripts accompanying hisat2
adep: r-cran-argparse

GNU R command line parser for optional and positional arguments
adep: r-bioc-dexseq

GNU R inference of differential exon usage in RNA-Seq
adep: tabix

generic indexer for TAB-delimited genome position files

Download trinityrnaseq

File	Size (in kB)	MD5 checksum
trinityrnaseq_2.13.2+dfsg-3.dsc	2.6 kB	5f0bc5c4b7394a34384ad441b5f7d64d
trinityrnaseq_2.13.2+dfsg.orig.tar.xz	272,350.9 kB	10b5d503e69ff4ad11b91f2e973f2714
trinityrnaseq_2.13.2+dfsg-3.debian.tar.xz	39.0 kB	3cfdaaf1c175e3391bbff037b87b6751

Debian Package Source Repository (VCS: Git): https://salsa.debian.org/med-team/trinityrnaseq.git
Debian Package Source Repository (Browsable): https://salsa.debian.org/med-team/trinityrnaseq