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Source Package: snpeff (5.2.b+dfsg-1) [universe]

Links for snpeff

Ubuntu Resources:

Maintainer:

Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

Debian Med Packaging Team (Mail Archive)
Andreas Tille
Pierre Gruet

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Homepage [pcingola.github.io]

The following binary packages are built from this source package:

libsnpeff-java: genetic variant annotation and effect prediction toolbox - lib
libsnpeff-java-doc: Documentation for Snp Effect
snpeff: genetic variant annotation and effect prediction toolbox - tool

Other Packages Related to snpeff

build-depends

build-depends-indep

adep: debhelper-compat (= 13)

Package not available
adep: javahelper

Helper scripts for packaging Java programs
adep: default-jdk

Standard Java or Java compatible Development Kit
adep: default-jdk-doc

Standard Java or Java compatible Development Kit (documentation)
adep: maven-debian-helper

Helper tools for building Debian packages with Maven
adep: libmaven-assembly-plugin-java

Maven Assembly Plugin
adep: libtrove3-java

high performance collections for java
adep: libhtsjdk-java

Java API for high-throughput sequencing data (HTS) formats
adep: libbiojava6-java

Java API to biological data and applications (version 6)
adep: junit5

JUnit regression test framework for Java
adep: libcommons-codec-java

encoder and decoders such as Base64 and hexadecimal codec
adep: libcommons-io-java

Common useful IO related classes
adep: libcommons-cli-java

Command line arguments and options parsing library
adep: libcommons-math3-java

Java lightweight mathematics and statistics components
adep: libfreemarker-java

template engine written in Java
adep: libjaxb-api-java

Java Architecture for XML Binding API
adep: libmaven-javadoc-plugin-java

Maven Javadoc Plugin
adep: libbiojava6-java-doc

[Biology] Documentation for BioJava 6
adep: libtrove3-java-doc

high performance collections for java
adep: libcharts4j-java

free, lightweight charts and graphs Java API
adep: libapfloat-java

high performance arbitrary precision arithmetic library for Java
adep: libdistlib-java

Java library of statistical distribution functions

Download snpeff

File	Size (in kB)	MD5 checksum
snpeff_5.2.b+dfsg-1.dsc	2.5 kB	e9c45ee1b72bfeef586599fd96ca620a
snpeff_5.2.b+dfsg.orig.tar.xz	130,533.9 kB	c289508445dc23089f5a1cea241edda4
snpeff_5.2.b+dfsg-1.debian.tar.xz	13.9 kB	3ceebe8f515e99aa2040ef81d69f7835

Debian Package Source Repository (VCS: Git): https://salsa.debian.org/med-team/snpeff.git
Debian Package Source Repository (Browsable): https://salsa.debian.org/med-team/snpeff