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Links for snakemake

Ubuntu Resources:

• Bug Reports
• Ubuntu Changelog
• Copyright File
• Debian Source Repository (Git)

Maintainer:

• Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

• Debian Med Packaging Team (Mail Archive)
• Kevin Murray
• Rebecca N. Palmer

It should generally not be necessary for users to contact the original maintainer.

External Resources:

• Homepage [snakemake.readthedocs.io]

The following binary packages are built from this source package:

snakemake

pythonic workflow management system

snakemake-doc

documentation for pythonic workflow management system

Other Packages Related to snakemake

build-depends

build-depends-indep

• adep: ca-certificates

  Common CA certificates

• adep: cwltool

  Common Workflow Language reference implementation

• adep: debhelper-compat (= 13)

  Package not available

• adep: dh-python

  Debian helper tools for packaging Python libraries and applications

• adep: pybuild-plugin-pyproject

  Debian helper tools for packaging Python libraries using PEP517

• adep: environment-modules

  Modular system for handling environment variables

• adep: imagemagick

  image manipulation programs -- binaries
  also a virtual package provided by graphicsmagick-imagemagick-compat, imagemagick-6.q16

• adep: python3

  interactive high-level object-oriented language (default python3 version)

• adep: python3-appdirs

  determining appropriate platform-specific directories (Python 3)

• adep: python3-biopython

  Python3 library for bioinformatics

• adep: python3-boto3

  Python interface to Amazon's Web Services - Python 3.x

• adep: python3-botocore

  Low-level, data-driven core of boto 3 (Python 3)

• adep: python3-configargparse

  replacement for argparse with config files and environment variables

• adep: python3-connection-pool

  thread-safe connection pool for Python3

• adep: python3-datrie

  Super-fast, efficiently stored Trie for Python 3

• adep: python3-docutils

  text processing system for reStructuredText (implemented in Python 3)

• adep: python3-dropbox

  Official Dropbox API Client (Python3 version)

• adep: python3-flask

  micro web framework based on Werkzeug and Jinja2 - Python 3.x

• adep: python3-git

  Python library to interact with Git repositories

• adep: python3-jinja2 (>= 3.0~)

  small but fast and easy to use stand-alone template engine

• adep: python3-jsonschema

  An(other) implementation of JSON Schema (Draft 3, 4, 6, 7)

• adep: python3-nbformat

  Jupyter notebook format (Python 3)

• adep: python3-packaging

  core utilities for python3 packages

• adep: python3-pandas

  data structures for "relational" or "labeled" data

• adep: python3-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• adep: python3-psutil

  module providing convenience functions for managing processes (Python3)

• adep: python3-pulp (>= 2.0~)

  LP modeler - Python 3.x

• adep: python3-pygments

  syntax highlighting package written in Python 3

• adep: python3-pytest

  Simple, powerful testing in Python3

• adep: python3-pytools

  big bag of things supplementing Python 3 standard library

• adep: python3-ratelimiter

  simple Python library for limiting the rate of operations

• adep: python3-recommonmark

  CommonMark utility for Docutils and Sphinx projects -- Python 3

• adep: python3-requests

  elegant and simple HTTP library for Python3, built for human beings

• adep: python3-requests-mock

  mock out responses from the requests package - Python 3.x

• adep: python3-retry

  easy to use retry decorator

• adep: python3-pytest-mock

  Thin wrapper around mock for easier use with pytest (Python 3 module)

• adep: python3-rpy2

  Python3 interface to the GNU R language and environment (version 2)

• adep: python3-setuptools

  Python3 Distutils Enhancements

• adep: python3-smart-open (>= 3.0~)

  utils for streaming large files

• adep: python3-sphinx (>= 3.0~)

  documentation generator for Python projects

• adep: python3-sphinx-argparse

  Sphinx extension for argparse commands and options (Python 3)

• adep: python3-sphinx-bootstrap-theme

  bootstrap theme for Sphinx (Python 3)

• adep: python3-sphinx-rtd-theme

  sphinx theme from readthedocs.org (Python 3)

• adep: python3-stopit

  Timeout control decorator and context manager for Python3

• adep: python3-tabulate

  pretty-print tabular data in Python3

• adep: python3-throttler

  easy throttling with asyncio support for Python3

• adep: python3-toposort

  topological sort algorithm - Python 3 module

• adep: python3-wrapt

  decorators, wrappers and monkey patching. - Python 3.x

• adep: python3-yaml

  YAML parser and emitter for Python3

• adep: python3-yte

  YAML template engine with Python expressions

• adep: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• adep: stress

  tool to impose load on and stress test a computer system

Download snakemake

File	Size (in kB)	MD5 checksum
snakemake_7.32.4-2.dsc	3.4 kB	023a955d8b346c487d2e2dfcfbbdc4bc
snakemake_7.32.4.orig.tar.gz	8,677.6 kB	2d7cd0faf40a8ca3c6e47f214536d1c9
snakemake_7.32.4-2.debian.tar.xz	26.3 kB	c396143d62438a2ff44733ceeb5dd153

Debian Package Source Repository (VCS: Git)

https://salsa.debian.org/med-team/snakemake.git

Debian Package Source Repository (Browsable)

https://salsa.debian.org/med-team/snakemake