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[ Source: lumpy-sv  ]

Package: lumpy-sv (0.3.1+dfsg-6) [universe]

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Maintainer:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Nilesh Patra

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Similar packages:

general probabilistic framework for structural variant discovery

Other Packages Related to lumpy-sv

  • depends
  • recommends
  • suggests
  • enhances
  • dep: bamkit
    tools for common BAM file manipulations
  • dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
    dynamic library for manipulating BAM (genome alignment) files
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
  • dep: libgcc-s1 (>= 3.3.1) [not armhf, riscv64]
    GCC support library
    dep: libgcc-s1 (>= 3.4) [riscv64]
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgzstream0 (>= 1.5+dfsg)
    provide functionality of zlib C-library in a C++ iostream
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: samblaster
    marks duplicates, extracts discordant/split reads
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • rec: sambamba
    tools for working with SAM/BAM data

Download lumpy-sv

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 135.6 kB427.0 kB [list of files]
arm64 128.3 kB391.0 kB [list of files]
armhf 186.4 kB445.0 kB [list of files]
ppc64el 141.4 kB547.0 kB [list of files]
riscv64 197.7 kB529.0 kB [list of files]