Paquet : snippy (4.6.0+dfsg-5) [universe]

Liens pour snippy

Télécharger le paquet source snippy :

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It should generally not be necessary for users to contact the original maintainer.

dep: any2fasta

convert various sequence formats to FASTA
dep: bcftools

genomic variant calling and manipulation of VCF/BCF files
dep: bedtools

suite of utilities for comparing genomic features
dep: bwa

Burrows-Wheeler Aligner
dep: freebayes (>= 1.3.6-2)

Bayesian haplotype-based polymorphism discovery and genotyping
dep: libbio-perl-perl

BioPerl core perl modules
dep: libvcflib-tools

C++ library for parsing and manipulating VCF files (tools)
dep: minimap2

versatile pairwise aligner for genomic and spliced nucleotide sequences
dep: parallel

build and execute command lines from standard input in parallel
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: samclip

filter SAM file for soft and hard clipped alignments
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: seqtk

Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
dep: snp-sites

Binary code for the package snp-sites
dep: snpeff

genetic variant annotation and effect prediction toolbox - tool
dep: vt

toolset for short variant discovery in genetic sequence data

Télécharger pour toutes les architectures proposées
Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	26,7 ko	100,0 ko	[liste des fichiers]