packages
[ Bron: ugene ]
Pakket: ugene (52.1+dfsg-1) [multiverse]
Verwijzigingen voor ugene
Ubuntu bronnen:
Het bronpakket ugene downloaden:
Beheerder:
Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.
Original Maintainers (usually from Debian):
- Debian Med Packaging Team (Mailarchief)
- Steffen Moeller
- Andreas Tille
- Olivier Sallou
- Pierre Gruet
It should generally not be necessary for users to contact the original maintainer.
Externe bronnen:
- Homepage [ugene.unipro.ru]
Vergelijkbare pakketten:
integrated bioinformatics toolkit
Andere aan ugene gerelateerde pakketten
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
-
- dep: libgcc-s1 (>= 3.0) [arm64]
- GCC support library
- dep: libgcc-s1 (>= 3.3.1) [amd64]
-
- dep: libgl1
- Vendor neutral GL dispatch library -- legacy GL support
-
- dep: libglu1-mesa
- Mesa OpenGL utility library (GLU)
- of libglu1
- virtueel pakket geboden door libglu1-mesa
-
- dep: libqt5core5t64 (>= 5.15.1)
- Qt 5 core module
-
- dep: libqt5gui5t64 (>= 5.14.1)
- Qt 5 GUI module
- of libqt5gui5-gles (>= 5.14.1)
- Qt 5 GUI module — OpenGL ES variant
-
- dep: libqt5network5t64 (>= 5.15.1)
- Qt 5 network module
-
- dep: libqt5networkauth5 (>= 5.11.2)
- online account access for Qt apps - Library
-
- dep: libqt5printsupport5t64 (>= 5.0.2)
- Qt 5 print support module
-
- dep: libqt5script5 (>= 5.6.0~beta)
- Qt 5 script module
-
- dep: libqt5svg5 (>= 5.6.0~beta)
- Qt 5 SVG module
-
- dep: libqt5test5t64 (>= 5.6.0~beta)
- Qt 5 test module
-
- dep: libqt5websockets5 (>= 5.6.0)
- Qt 5 Web Sockets module
-
- dep: libqt5widgets5t64 (>= 5.15.1)
- Qt 5 widgets module
-
- dep: libqt5xml5t64 (>= 5.0.2)
- Qt 5 XML module
-
- dep: libsqlite3-0 (>= 3.7.11)
- SQLite 3 shared library
-
- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
-
- dep: libx11-6
- X11 client-side library
-
- dep: libxtst6 (>= 2:1.2.5)
- X11 Testing -- Record extension library
-
- dep: ugene-data
- required data for UGENE - integrated bioinformatics toolkit
-
- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
-
- rec: bedtools
- suite of utilities for comparing genomic features
-
- rec: bowtie
- Ultrafast memory-efficient short read aligner
-
- rec: bowtie2
- ultrafast memory-efficient short read aligner
-
- rec: bwa
- Burrows-Wheeler Aligner
-
- rec: clark
- Pakket niet beschikbaar
-
- rec: clustalo
- General-purpose multiple sequence alignment program for proteins
-
- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
-
- rec: cutadapt
- Clean biological sequences from high-throughput sequencing reads
-
- rec: default-jre-headless
- Standard Java or Java compatible Runtime (headless)
-
- rec: fastqc
- quality control for high throughput sequence data
-
- rec: hisat2
- graph-based alignment of short nucleotide reads to many genomes
-
- rec: hmmer
- profile hidden Markov models for protein sequence analysis
-
- rec: hmmer2
- profile hidden Markov models for protein sequence analysis
-
- rec: kalign
- Global and progressive multiple sequence alignment
-
- rec: kraken
- assigning taxonomic labels to short DNA sequences
-
- rec: macs
- Model-based Analysis of ChIP-Seq on short reads sequencers
-
- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
-
- rec: metaphlan2
- virtueel pakket geboden door metaphlan
-
- rec: mrbayes
- Bayesian Inference of Phylogeny
-
- rec: muscle
- Multiple alignment program of protein sequences
-
- rec: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- rec: phyml
- Phylogenetic estimation using Maximum Likelihood
-
- rec: primer3
- tool to design flanking oligo nucleotides for DNA amplification
-
- rec: r-base
- GNU R statistical computation and graphics system
-
- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- rec: spades
- genome assembler for single-cell and isolates data sets
-
- rec: t-coffee
- Multiple Sequence Alignment
-
- rec: trimmomatic
- flexible read trimming tool for Illumina NGS data
-
- rec: vcftools
- Collection of tools to work with VCF files
-
- rec: wevote
- Pakket niet beschikbaar
-
- sug: cufflinks
- Transcript assembly, differential expression and regulation for RNA-Seq