packages
[ Pakiet źródłowy: bcbio ]
Pakiet: bcbio (1.2.9-4) [multiverse]
Odnośniki dla bcbio
Zasoby systemu Ubuntu:
Pobieranie pakietu źródłowego bcbio:
Opiekun:
Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.
Original Maintainers (usually from Debian):
- Debian Med Packaging Team (Archiwum e-mail)
- Steffen Moeller
It should generally not be necessary for users to contact the original maintainer.
Zasoby zewnętrzne:
- Strona internetowa [github.com]
Podobne pakiety:
toolkit for analysing high-throughput sequencing data
Inne pakiety związane z bcbio
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-bcbio
- library for analysing high-throughput sequencing data
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- rec: bcftools
- genomic variant calling and manipulation of VCF/BCF files
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- rec: bwa
- Burrows-Wheeler Aligner
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- rec: cnvkit
- Copy number variant detection from targeted DNA sequencing
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- rec: cufflinks
- Transcript assembly, differential expression and regulation for RNA-Seq
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- rec: delly
- Structural variant discovery by read analysis
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- rec: fastqc
- quality control for high throughput sequence data
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- rec: freebayes
- Bayesian haplotype-based polymorphism discovery and genotyping
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- rec: grabix
- wee tool for random access into BGZF files
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- rec: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- rec: libvcflib-tools
- C++ library for parsing and manipulating VCF files (tools)
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- rec: macs
- Model-based Analysis of ChIP-Seq on short reads sequencers
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- rec: pythonpy
- 'python -c', with tab completion and shorthand
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- rec: rna-star
- ultrafast universal RNA-seq aligner
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- rec: salmon
- wicked-fast transcript quantification from RNA-seq data
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- rec: sambamba
- tools for working with SAM/BAM data
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- rec: samblaster
- marks duplicates, extracts discordant/split reads
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: stringtie
- assemble short RNAseq reads to transcripts
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- rec: subread
- toolkit for processing next-gen sequencing data
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- rec: tabix
- generic indexer for TAB-delimited genome position files
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- rec: umis
- tools for processing UMI RNA-tag data
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- rec: varscan
- variant detection in next-generation sequencing data
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- rec: wget
- retrieves files from the web
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- rec: wham-align
- Wisconsin's High-Throughput Alignment Method
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- sug: cwltool
- Common Workflow Language reference implementation
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- sug: kallisto
- near-optimal RNA-Seq quantification
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- sug: libglu1-mesa
- Mesa OpenGL utility library (GLU)
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- sug: qualimap
- Pakiet niedostępny
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- sug: r-bioc-summarizedexperiment
- BioConductor assay container
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- sug: r-cran-tidyverse
- Easily Install and Load the 'Tidyverse'
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- sug: r-other-wasabi
- prepare Sailfish and Salmon output for downstream analysis using GNU R
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- sug: toil
- cross-platform workflow engine
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- sug: tophat-recondition
- post-processor for TopHat unmapped reads
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- sug: tophat2
- Pakiet niedostępny
Pobieranie bcbio
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| all | 39,9 KiB | 247,0 KiB | [lista plików] |