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[ Source: pigx-rnaseq  ]

Links for pigx-rnaseq

Ubuntu Resources:

• Bug Reports
• Ubuntu Changelog
• Copyright File

Download Source Package pigx-rnaseq:

• [pigx-rnaseq_0.1.1-1.dsc]
• [pigx-rnaseq_0.1.1.orig.tar.xz]
• [pigx-rnaseq_0.1.1-1.debian.tar.xz]

Maintainer:

• Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

• Debian Med Packaging Team (Mail Archive)
• Steffen Moeller

It should generally not be necessary for users to contact the original maintainer.

External Resources:

• Homepage [github.com]

Similar packages:

• r-bioc-bitseq
• r-bioc-noiseq
• r-bioc-gsva
• rna-star
• r-bioc-degnorm
• rockhopper
• cufflinks
• r-bioc-monocle
• r-cran-spp
• salmon
• r-bioc-edaseq

Other Packages Related to pigx-rnaseq

depends

recommends

suggests

enhances

• dep: fastp

  Ultra-fast all-in-one FASTQ preprocessor

• dep: fastqc

  quality control for high throughput sequence data

• dep: hisat2

  graph-based alignment of short nucleotide reads to many genomes

  or rna-star

  ultrafast universal RNA-seq aligner

• dep: libjs-jquery-datatables

  jQuery plug-in that makes nice tables from different data sources

• dep: libjs-jquery-tablesorter

  jQuery flexible client-side table sorting plugin

• dep: megadepth

  computes coverage from BigWig and BAM sequencing files

• dep: multiqc

  output integration for RNA sequencing across tools and samples

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-deeptools

  platform for exploring biological deep-sequencing data

• dep: python3-htseq

  Python3 high-throughput genome sequencing read analysis utilities

• dep: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• dep: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-bioc-tximport

  transcript-level estimates for biological sequencing

• dep: r-cran-corrplot

  Visualization of a Correlation Matrix

• dep: r-cran-crosstalk

  GNU R inter-widget interactivity for HTML widgets

• dep: r-cran-data.table

  GNU R extension of Data.frame

• dep: r-cran-dt

  GNU R wrapper of the JavaScript library 'DataTables'

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-ggpubr

  GNU R ggplot2 based publication ready plots

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-gprofiler2

  Interface to the 'g:Profiler' Toolset

• dep: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• dep: r-cran-plotly

  create interactive web graphics via 'plotly.js' in GNU R

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-rjson

  GNU R package for converting between R and JSON objects

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• dep: r-cran-scales

  Scale functions for visualization

• dep: salmon

  wicked-fast transcript quantification from RNA-seq data

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: snakemake

  pythonic workflow management system

• dep: trim-galore

  automate quality and adapter trimming for DNA sequencing

• rec: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• rec: rna-star

  ultrafast universal RNA-seq aligner

Download pigx-rnaseq

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	51.9 kB	176.0 kB	[list of files]