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[ Source: r-bioc-shortread  ]

Links for r-bioc-shortread

Ubuntu Resources:

• Bug Reports
• Ubuntu Changelog
• Copyright File

Download Source Package r-bioc-shortread:

• [r-bioc-shortread_1.64.0-3.dsc]
• [r-bioc-shortread_1.64.0.orig.tar.gz]
• [r-bioc-shortread_1.64.0-3.debian.tar.xz]

Maintainer:

• Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

• Debian R Packages Maintainers
• Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

External Resources:

• Homepage [bioconductor.org]

Similar packages:

• r-cran-sp
• r-cran-spacetime
• r-bioc-metagenomeseq
• r-bioc-rhtslib
• r-bioc-phyloseq
• cutadapt
• python3-htseq
• python3-cutadapt
• bcbio
• python3-bcbio
• libhts3

Other Packages Related to r-bioc-shortread

depends

recommends

suggests

enhances

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.7) [s390x]

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.20

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.23.3)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.15.6)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.31.8)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-pwalign

  Perform pairwise sequence alignments

• dep: r-bioc-rhtslib

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.17.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector

  BioConductor representation and manpulation of external sequences

• dep: r-cran-hwriter

  HTML Writer - Outputs R objects in HTML format

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-latticeextra

  GNU R package of additional graphical displays based on lattice

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit

  GNU R package providing unit testing framework

Download r-bioc-shortread

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	5,123.9 kB	8,213.0 kB	[list of files]
arm64	5,120.3 kB	8,255.0 kB	[list of files]
ppc64el	5,167.8 kB	8,297.0 kB	[list of files]
riscv64	5,122.1 kB	8,193.0 kB	[list of files]
s390x	5,163.6 kB	8,261.0 kB	[list of files]