Software Packages in "questing", Subsection science
- abacas (1.3.1-9) [universe]
- close gaps in genomic alignments from short reads
- abacas-examples (1.3.1-9) [universe]
- sample data for abacas to close gaps in genomic alignments
- abinit (9.10.4-3build2) [universe]
- package for electronic structure calculations
- abinit-data (9.10.4-3build2) [universe]
- package for electronic structure calculations (Data files)
- abpoa (1.5.3-1build2) [universe]
- adaptive banded Partial Order Alignment
- abyss (2.3.10-1ubuntu1) [universe]
- de novo, parallel, sequence assembler for short reads
- acedb-other (4.9.39+dfsg.02-9) [universe]
- retrieval of DNA or protein sequences
- achilles (2-13) [universe]
- Artificial life and evolution simulator
- adapterremoval (2.3.4-1) [universe]
- rapid adapter trimming, identification, and read merging of gene sequences
- adapterremoval-examples (2.3.4-1) [universe]
- rapid adapter trimming, identification, and read merging (example data)
- adms (2.3.7-2) [universe]
- Automatic device model synthesizer for Verilog-AMS
- adun-core (0.81-15build2) [universe]
- Molecular Simulator
- adun.app (0.81-15build2) [universe]
- Molecular Simulator for GNUstep (GUI)
- aegean (0.16.0+dfsg-5) [universe]
- integrated genome analysis toolkit
- aevol (5.0+ds-4ubuntu3) [universe]
- digital genetics model to run Evolution Experiments in silico
- aghermann (1.1.2-5build4) [universe]
- Sleep-research experiment manager
- aladin (12.060+dfsg-3) [universe]
- Interactive sky atlas for astronomical images and datasets
- alfa (2.2-1build3) [universe]
- Automated Line Fitting Algorithm
- algotutor (0.8.6-6) [universe]
- program for observing the intermediate steps of algorithm
- alicevision (3.2.0+repack-2) [multiverse]
- Photogrammetric Computer Vision Framework
- alien-hunter (1.7-10) [universe]
- Interpolated Variable Order Motifs to identify horizontally acquired DNA
- allelecount (4.3.0-3) [universe]
- NGS copy number algorithms
- altree (1.3.2-4) [universe]
- program to perform phylogeny-based association and localization analysis
- altree-examples (1.3.2-4) [universe]
- example files for ALTree
- amap-align (2.2+git20080214.600fc29+dfsg-2) [universe]
- Protein multiple alignment by sequence annealing
- ampliconnoise (1.29-16) [universe]
- removal of noise from 454 sequenced PCR amplicons
- andi (0.14-3build1) [universe]
- Efficient Estimation of Evolutionary Distances
- ants (2.5.4+dfsg-1) [universe]
- advanced normalization tools for brain and image analysis
- any2fasta (0.4.2-2) [universe]
- convert various sequence formats to FASTA
- any2fasta-examples (0.4.2-2) [universe]
- convert various sequence formats to FASTA (example data)
- aoflagger (3.4.0-3build4) [universe]
- Find RFI in radio astronomical observations
- apbs (3.4.1-6build2) [universe]
- Adaptive Poisson Boltzmann Solver
- apbs-data (3.4.1-6build2) [universe]
- data files for APBS (Adaptive Poisson Boltzmann Solver)
- apbs-doc (3.4.1-6build2) [universe]
- Adaptive Poisson Boltzmann Solver
- apertium-af-nl (0.3.0-3) [universe]
- Transitional dummy package for apertium-afr-nld
- apertium-afr-nld (0.3.0-3) [universe]
- Apertium translation data for the Afrikaans-Dutch pair
- apertium-all-dev (3.8.1-3) [universe]
- Metapackage for all tools required for Apertium development
- apertium-anaphora (1.1.1-1build4) [universe]
- Anaphora resolution module for Apertium
- apertium-apy (0.13.0-1) [universe]
- Apertium APY service
- apertium-arg-cat (0.3.0-2) [universe]
- Apertium translation data for the Aragonese-Catalan pair
- apertium-bel-rus (0.2.1-2) [universe]
- Apertium translation data for the Belarusian-Russian pair
- apertium-br-fr (0.5.1-1) [universe]
- Apertium linguistic data to translate between Breton and French
- apertium-ca-it (1.1.0-1) [universe]
- Transitional dummy package for apertium-cat-ita
- apertium-cat-ita (1.1.0-1) [universe]
- Apertium translation data for the Catalan-Italian pair
- apertium-cat-srd (1.2.0-1) [universe]
- Apertium translation data for the Catalan-Sardinian pair
- apertium-dan-nor (1.5.0-2) [universe]
- Apertium translation data for the Danish-Norwegian pair
- apertium-dev (3.9.12-1build1) [universe]
- Development tools and library for Apertium
- apertium-en-gl (0.5.4-2) [universe]
- Apertium translation data for the English-Galician pair
- apertium-eng-cat (1.0.1-5) [universe]
- Apertium translation data for the English-Catalan pair
- apertium-eng-spa (0.8.1-2) [universe]
- Apertium translation data for the English-Spanish pair
- apertium-eo-en (1.0.2-1) [universe]
- Apertium linguistic data to translate between Esperanto and English
- apertium-eo-fr (0.9.1-1) [universe]
- Apertium translation data for the Esperanto-French pair
- apertium-es-ast (1.1.1-2) [universe]
- Transitional dummy package for apertium-spa-ast
- apertium-es-it (0.2.1-3) [universe]
- Transitional dummy package for apertium-spa-ita
- apertium-eu-en (0.3.3-1) [universe]
- Apertium translation data for the Basque-English pair
- apertium-eval-translator (1.2.1-3) [universe]
- Evaluate machine translation output against reference
- apertium-fra-cat (1.10.0-1) [universe]
- Apertium translation data for the French-Catalan pair
- apertium-fra-frp (1.1.0-1) [universe]
- Apertium translation data for the French-Arpitan pair
- apertium-get (1.0.0-3) [universe]
- Helper for Apertium and Giellatekno languages and pairs
- apertium-hbs-eng (0.5.1-2) [universe]
- Apertium translation data for the Serbo-Croatian - English pair
- apertium-hbs-mkd (0.1.1-1) [universe]
- Apertium translation data for the Serbo-Croatian-Macedonian pair
- apertium-hbs-slv (0.5.1-2) [universe]
- Apertium translation data for the Serbo-Croatian-Slovenian pair
- apertium-hin (0.1.0~r59158-4) [universe]
- Apertium single language data for Hindi
- apertium-id-ms (0.1.2-3) [universe]
- Transitional dummy package for apertium-ind-zlm
- apertium-ind-zlm (0.1.2-3) [universe]
- Apertium translation data for the Indonesian-Malay pair
- apertium-is-sv (0.1.1-2) [universe]
- Transitional dummy package for apertium-isl-swe
- apertium-isl-eng (0.1.2-1) [universe]
- Apertium translation data for the Icelandic-English pair
- apertium-isl-swe (0.1.1-2) [universe]
- Apertium translation data for the Icelandic-Swedish pair
- apertium-lex-tools (0.5.0-1build1) [universe]
- Constraint-based lexical selection module
- apertium-lex-tools-dev (0.5.0-1build1) [universe]
- Development library for Apertium lexical selection module
- apertium-mk-bg (0.2.1-2) [universe]
- Transitional dummy package for apertium-mkd-bul
- apertium-mk-en (0.1.3-2) [universe]
- Transitional dummy package for apertium-mkd-eng
- apertium-mkd-bul (0.2.1-2) [universe]
- Apertium translation data for the Macedonian-Bulgarian pair
- apertium-mkd-eng (0.1.3-2) [universe]
- Apertium translation data for the Macedonian-English pair
- apertium-nno-nob (1.6.0-1) [universe]
- Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
- apertium-oci-fra (1.0.0-2) [universe]
- Apertium translation data for the Occitan-French pair
- apertium-pol-szl (0.2.1-3) [universe]
- Apertium translation data for the Polish-Silesian pair
- apertium-por-cat (0.10.1-2) [universe]
- Apertium translation data for the Portuguese-Catalan pair
- apertium-recursive (1.2.1-1build1) [universe]
- Apertium recursive structural transfer module
- apertium-regtest (0.9.2-1) [universe]
- Regression test suite for Apertium languages and pairs
- apertium-rus-ukr (0.2.1-4) [universe]
- Apertium translation data for the Russian-Ukrainian pair
- apertium-separable (0.7.1-1build1) [universe]
- Reordering separable/discontiguous multiwords
- apertium-spa-arg (0.6.0-2) [universe]
- Apertium translation data for the Spanish-Aragonese pair
- apertium-spa-ast (1.1.1-2) [universe]
- Apertium translation data for the Spanish-Asturian pair
- apertium-spa-ast
- virtual package provided by apertium-spa-ast
- apertium-spa-cat (2.2.0-3) [universe]
- Apertium translation data for the Spanish-Catalan pair
- apertium-spa-ita (0.2.1-3) [universe]
- Apertium translation data for the Spanish-Italian pair
- apertium-srd-ita (1.3.0-1) [universe]
- Apertium translation data for the Sardinian-Italian pair
- apertium-swe-dan (0.8.1-3) [universe]
- Apertium translation data for the Swedish-Danish pair
- apertium-swe-nor (0.4.0-1) [universe]
- Apertium translation data for the Swedish-Norwegian pair
- apertium-urd (0.1.0~r61311-3) [universe]
- Apertium single language data for Urdu
- apertium-urd-hin (0.1.0~r64379-4) [universe]
- Apertium translation data for the Urdu-Hindi pair
- aragorn (1.2.41-3) [universe]
- tRNA and tmRNA detection in nucleotide sequences
- arb (6.0.6-8) [multiverse]
- phylogenetic sequence analysis suite - main program
- arb-common (6.0.6-8) [multiverse]
- phylogenetic sequence analysis suite - common files
- arden (1.0-6) [universe]
- specificity control for read alignments using an artificial reference
- ariba (2.14.7+ds-7syncable1) [universe]
- Antibiotic Resistance Identification By Assembly
- art-nextgen-simulation-tools (20160605+dfsg-5build1) [universe]
- simulation tools to generate synthetic next-generation sequencing reads
- art-nextgen-simulation-tools-profiles (20160605+dfsg-5build1) [universe]
- profiles for art simulation tools
- artemis (18.2.0+dfsg-4) [universe]
- genome browser and annotation tool
- artfastqgenerator (0.0.20150519-5) [universe]
- outputs artificial FASTQ files derived from a reference genome
- artfastqgenerator-examples (0.0.20150519-5) [universe]
- outputs artificial FASTQ files derived from a reference genome (examples)
- asdftool (4.1.0-2) [universe]
- Command line tool to manipulate ASDF scientific data files
- ase (3.24.0-1) [universe]
- Atomic Simulation Environment
- assembly-stats (1.0.1+ds-6) [universe]
- get assembly statistics from FASTA and FASTQ files
- assemblytics (1.2.1+dfsg-2) [universe]
- detect and analyze structural variants from a genome assembly
- astap (2024.05.01-1) [universe]
- astrometric (plate) solver, stacking of images, photometry and FITS viewer
- astap-cli (2024.05.01-1) [universe]
- astrometric (plate) solver, command line version
- astro-tasks (5.0) [universe]
- Debian Astronomy Pure Blend (tasksel tasks)
- astromatic (1.3) [universe]
- Astronomical pipeline software collection
- astrometry-data-2mass (1.2) [multiverse]
- Astrometry.net 2MASS index files downloader
- astrometry-data-2mass-00 (1.2) [multiverse]
- Astrometry.net 2MASS index files downloader (2'-2.8')
- astrometry-data-2mass-01 (1.2) [multiverse]
- Astrometry.net 2MASS index files downloader (2.8'-4')
- astrometry-data-2mass-02 (1.2) [multiverse]
- Astrometry.net 2MASS index files downloader (4'-5.6')
- astrometry-data-2mass-03 (1.2) [multiverse]
- Astrometry.net 2MASS index files downloader (5.6'-8')
- astrometry-data-2mass-04 (1.2) [multiverse]
- Astrometry.net 2MASS index files downloader (8'-11')
- astrometry-data-2mass-05 (1.2) [multiverse]
- Astrometry.net 2MASS index files downloader (11'-16')
- astrometry-data-2mass-06 (1.2) [multiverse]
- Astrometry.net 2MASS index files downloader (16'-22')
- astrometry-data-2mass-07 (1.2) [multiverse]
- Astrometry.net 2MASS index files downloader (22'-30')
- astrometry-data-2mass-08-19 (1.2) [multiverse]
- Astrometry.net 2MASS index files downloader (30'-2000')
- astrometry-data-tycho2 (2-5) [universe]
- Astrometry.net Tycho-2 index files
- astrometry-data-tycho2-07 (2-5) [universe]
- Astrometry.net Tycho-2 index files (22'-30')
- astrometry-data-tycho2-07-bigendian (2-5) [universe]
- Astrometry.net Tycho-2 big endian index files (22'-30')
- astrometry-data-tycho2-07-littleendian (2-5) [universe]
- Astrometry.net Tycho-2 little endian index files (22'-30')
- astrometry-data-tycho2-08 (2-5) [universe]
- Astrometry.net Tycho-2 index files (30'-44')
- astrometry-data-tycho2-08-bigendian (2-5) [universe]
- Astrometry.net Tycho-2 big endian index files (30'-44')
- astrometry-data-tycho2-08-littleendian (2-5) [universe]
- Astrometry.net Tycho-2 little endian index files (30'-44')
- astrometry-data-tycho2-09 (2-5) [universe]
- Astrometry.net Tycho-2 index files (44'-60')
- astrometry-data-tycho2-09-bigendian (2-5) [universe]
- Astrometry.net Tycho-2 big endian index files (44'-60')
- astrometry-data-tycho2-09-littleendian (2-5) [universe]
- Astrometry.net Tycho-2 little endian index files (44'-60')
- astrometry-data-tycho2-10-19 (2-5) [universe]
- Astrometry.net Tycho-2 index files (60'-2000')
- astrometry-data-tycho2-10-19-bigendian (2-5) [universe]
- Astrometry.net Tycho-2 big endian index files (60'-2000')
- astrometry-data-tycho2-10-19-littleendian (2-5) [universe]
- Astrometry.net Tycho-2 little endian index files (60'-2000')
- astrometry.net (0.97+dfsg-2) [universe]
- Astrometry plate solver
- astronomical-almanac (5.6-9) [universe]
- astronomical almanac - calculate planet and star positions
- atac (0~20150903+r2013-9build1) [universe]
- genome assembly-to-assembly comparison
- ataqv (1.3.1+ds-2build5) [universe]
- ATAC-seq QC and visualization
- atomes (1.1.17-1build1) [universe]
- atomic-scale 3D modeling toolbox
- atomes-data (1.1.17-1build1) [universe]
- atomic-scale 3D modeling toolbox (data)
- atropos (1.1.32+dfsg-2build2) [universe]
- NGS read trimming tool that is specific, sensitive, and speedy
- augur (24.4.0-1) [universe]
- pipeline components for real-time virus analysis
- augustus (3.5.0+dfsg-5build2) [universe]
- gene prediction in eukaryotic genomes
- augustus-data (3.5.0+dfsg-5build2) [universe]
- data files for AUGUSTUS
- autodock (4.2.6-9) [universe]
- analysis of ligand binding to protein structure
- autodock-getdata (4.2.6-9) [universe]
- instructions for getData to collect compounds
- autodock-test (4.2.6-9) [universe]
- test files for AutoDock
- autodock-vina (1.2.7-1build1) [universe]
- docking of small molecules to proteins
- autogrid (4.2.6-9) [universe]
- pre-calculate binding of ligands to their receptor
- autogrid-test (4.2.6-9) [universe]
- test files for AutoGrid
- avce00 (2.0.0-10) [universe]
- Conversion of ESRI Arcinfo Vector Coverage in E00 format
- avogadro (1.100.0-2) [universe]
- Molecular Graphics and Modelling System
- avogadro-utils (1.100.0-1) [universe]
- Molecular Graphics and Modelling System (library)
- axe-demultiplexer (0.3.3+dfsg-4build2) [universe]
- Trie-based DNA sequencing read demultiplexer
- bagel (1.2.2-8build2) [universe]
- Computational Chemistry Package
- baitfisher (1.2.7+git20211020.de26d5c+dfsg-2) [universe]
- software package for designing hybrid enrichment probes
- bali-phy (4.0-1build2) [universe]
- Bayesian Inference of Alignment and Phylogeny
- bamclipper (1.0.0-3) [universe]
- Remove gene-specific primer sequences from SAM/BAM alignments
- bamkit (0.0.1+git20170413.ccd079d-3) [universe]
- tools for common BAM file manipulations
- bamtools (2.5.2+dfsg-6build1) [universe]
- toolkit for manipulating BAM (genome alignment) files
- bandage (0.9.0-2build2) [universe]
- Bioinformatics Application for Navigating De novo Assembly Graphs Easily
- bandage-examples (0.9.0-2build2) [universe]
- Bioinformatics Application for Navigating De novo Assembly Graphs Easily (data)
- barrnap (0.9+dfsg-4) [universe]
- rapid ribosomal RNA prediction
- bart (0.9.00-3) [universe]
- tools for computational magnetic resonance imaging
- bart
- virtual package provided by bart-cuda
- bart-cuda (0.8.00-2build3) [multiverse]
- tools for computational magnetic resonance imaging
- bart-view (0.3.00-1build3) [universe]
- viewer for multi-dimensional complex-valued data
- bbmap (39.20+dfsg-2) [universe]
- BBTools genomic aligner and other tools for short sequences
- bbmap-jni (39.20+dfsg-2) [universe]
- short read aligner and other bioinformatic tools - JNI library
- bcalm (2.2.3-5build3) [universe]
- de Bruijn compaction in low memory
- bcbio (1.2.9-4) [multiverse]
- toolkit for analysing high-throughput sequencing data
- bcftools (1.21-1) [universe]
- genomic variant calling and manipulation of VCF/BCF files
- beads (1.1.22-1build5) [universe]
- 2-DE electrophoresis gel image spot detection
- beagle (241217-3) [universe]
- Genotype calling, genotype phasing and imputation of ungenotyped markers
- beast-mcmc (1.10.4+dfsg-7) [multiverse]
- Bayesian MCMC phylogenetic inference
- beast2-mcmc (2.7.6+dfsg-1) [universe]
- Bayesian MCMC phylogenetic inference
- bedops (2.4.41+dfsg-3) [universe]
- high-performance genomic feature operations
- bedtools (2.31.1+dfsg-2) [universe]
- suite of utilities for comparing genomic features
- bedtools-test (2.31.1+dfsg-2) [universe]
- test data for the bedtools package
- belvu (4.44.1+dfsg-7.1build3) [universe]
- multiple sequence alignment viewer and phylogenetic tool
- berkeley-express (1.5.3+dfsg-3build6) [universe]
- Streaming quantification for high-throughput sequencing
- bio-eagle (2.4.1-3build4) [universe]
- Haplotype phasing within a genotyped cohort or using a phased reference panel
- bio-eagle-examples (2.4.1-3build4) [universe]
- Examples for bio-eagle
- bio-rainbow (2.0.4+dfsg-2) [universe]
- clustering and assembling short reads for bioinformatics
- bio-vcf (0.9.5-3) [universe]
- domain specific language (DSL) for processing the VCF format
- bioawk (1.0-5) [universe]
- extension of awk for biological sequence analysis
- biobambam2 (2.0.185+ds-2) [universe]
- tools for early stage alignment file processing
- biogenesis (0.8-3.2) [universe]
- artificial life program that simulates evolution of organisms
- bioperl (1.7.8-1) [universe]
- Perl tools for computational molecular biology
- biosig-tools (3.9.0-1) [universe]
- format conversion tools for biomedical data formats
- biosquid (1.9g+cvs20050121-15.1build1) [universe]
- utilities for biological sequence analysis
- biosyntax (1.0.0b-6) [universe]
- Syntax Highlighting for Computational Biology (metapackage)
- biosyntax-common (1.0.0b-6) [universe]
- Syntax Highlighting for Computational Biology (common files)
- biosyntax-example (1.0.0b-6) [universe]
- Syntax Highlighting for Computational Biology (example)
- biosyntax-gedit (1.0.0b-6) [universe]
- Syntax Highlighting for Computational Biology (gedit)
- biosyntax-less (1.0.0b-6) [universe]
- Syntax Highlighting for Computational Biology (less)
- biosyntax-vim (1.0.0b-6) [universe]
- Syntax Highlighting for Computational Biology (vim)
- bitseq (0.7.5+dfsg-7) [universe]
- Bayesian Inference of Transcripts from Sequencing Data
- bitwise (0.50-1build1) [universe]
- Interactive bitwise operation in ncurses
- bkchem (0.14.0~pre4+git20211228-5) [universe]
- Chemical structures editor
- blasr (5.3.5+dfsg-7build1) [universe]
- mapping single-molecule sequencing reads
- blimps-utils (3.9+ds-2) [multiverse]
- blocks database improved searcher
- blinken (4:25.08.1-0ubuntu1) [universe]
- KDE version of the Simon electronic memory game
- blixem (4.44.1+dfsg-7.1build3) [universe]
- interactive browser of sequence alignments
- bluebrain-hpc-coding-conventions (1.0.0+git20221201-2) [universe]
- BlueBrain HPC Team C++ Development Guidelines
- bmt (0.6-1.1) [universe]
- software analysis benchmarking toolkit
- bodr (10-3) [universe]
- Blue Obelisk Data Repository
- bolt-lmm (2.4.1+dfsg-2build2) [universe]
- Efficient large cohorts genome-wide Bayesian mixed-model association testing
- bolt-lmm-example (2.4.1+dfsg-2build2) [universe]
- Examples for bolt-lmm
- boolector (1.5.118.6b56be4.121013-1.3) [universe]
- SMT solver for bit-vectors and arrays
- bornagain (22~git20250325170646.93042f5+ds3-3) [universe]
- Simulate and fit X-ray and neutron GISAS -- binary
- bowtie (1.3.1-3) [universe]
- Ultrafast memory-efficient short read aligner
- bowtie-examples (1.3.1-3) [universe]
- Examples for bowtie, the ultrafast memory-efficient short read aligner
- bowtie2 (2.5.4-1) [universe]
- ultrafast memory-efficient short read aligner
- bowtie2-examples (2.5.4-1) [universe]
- Examples for bowtie2
- boxshade (3.3.1-14) [universe]
- Pretty-printing of multiple sequence alignments
- bppphyview (0.6.1-5) [universe]
- Bio++ Phylogenetic Viewer
- bppsuite (2.4.1-7) [universe]
- Bio++ program suite
- bppsuite-examples (2.4.1-7) [universe]
- Examples for Bio++ program suite
- brain2mesh-demos (0.7.9-3) [multiverse]
- sample files and demo scripts for Brain2Mesh
- brig (0.95+dfsg-3) [universe]
- BLAST Ring Image Generator
- btllib-tools (1.7.5+dfsg-2) [universe]
- Bioinformatics Technology Lab common code library tools
- busco (5.5.0-3) [universe]
- benchmarking sets of universal single-copy orthologs
- bustools (0.43.2+dfsg-1) [universe]
- program for manipulating BUS files for single cell RNA-Seq datasets
- bwa (0.7.18-1) [universe]
- Burrows-Wheeler Aligner
- bwa-mem2 (2.2.1-1) [universe]
- Sequence alignment using Burrows-Wheeler Transform
- c-munipack (2.1.37-1) [universe]
- reduction of images carried out by CCD camera
- c-munipack-share (2.1.37-1) [universe]
- reduction of images carried out by CCD camera (share)
- c2x (2.42+ds-1) [universe]
- converter between DFT electronic structure codes formats
- cafeobj (1.6.0-2build1) [universe]
- new generation algebraic specification and programming language
- cafeobj-mode (1.6.0-2build1) [universe]
- Emacs major mode for editing CafeOBJ source code
- calceph (4.0.4-2) [universe]
- Planetary ephemeris data access tools
- calculix-cgx (2.21+dfsg-1build1) [universe]
- Calculix cgx is a 3-dimensional pre- and post-processor for fem
- callisto (1.1.0-3) [universe]
- Daemon for e-Callisto hardware
- camitk-actionstatemachine (5.2.0-5) [universe]
- pipeline replay application for the CamiTK library
- camitk-config (5.2.0-5) [universe]
- Computer Assisted Medical Intervention Tool Kit - config
- camitk-imp (5.2.0-5) [universe]
- workbench application for the CamiTK library
- canu (2.2+dfsg-5) [universe]
- single molecule sequence assembler for genomes
- casacore-data-igrf (12-2) [universe]
- International Geomagnetic Reference Field data for casacore
- casacore-data-jpl-de200 (2007.07.05+ds.1-1) [universe]
- Jet Propulsion Laboratory Development Ephemeris DE200 for casacore
- casacore-data-jpl-de405 (2007.07.05+ds.1-1) [universe]
- Jet Propulsion Laboratory Development Ephemeris DE405 for casacore
- casacore-data-lines (0+git2016.11.26-3) [universe]
- Table of spectral line frequencies for casacore
- casacore-data-observatories (0+git2018.12.08-3) [universe]
- Table of radio observatory coordinates for casacore
- casacore-data-sources (2-6) [universe]
- Table of ICRF reference source coordinates for casacore
- casacore-data-tai-utc (1.3) [universe]
- Difference table between TAI and UTC for casacore
- casacore-tools (3.7.1-2) [universe]
- Tools built with CASA
- cassbeam (1.1-4build2) [universe]
- Cassegrain antenna modelling
- cassiopee (1.0.9-4build6) [universe]
- index and search tool in genomic sequences
- cat-bat (5.3-2) [universe]
- taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
- catfishq (1.4.0+ds-1) [universe]
- concatenates fastq files
- cba (0.3.6-6build3) [universe]
- Continuous Beam Analysis
- cbflib-bin (0.9.7+dfsg1-5build1) [universe]
- utilities to manipulate CBF files
- cbmc (6.6.0-4) [universe]
- bounded model checker for C and C++ programs
- cclib (1.8-1) [universe]
- Parsers and algorithms for computational chemistry
- cclib-data (1.6.2-2) [multiverse]
- Parsers and algorithms for computational chemistry (data files)
- cct (1:1.0.3-1) [universe]
- visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
- cct-examples (1:1.0.3-1) [universe]
- example data for testing the package cct
- cd-hit (4.8.1-4) [universe]
- suite of programs designed to quickly group sequences
- cdbfasta (1.00+git20230710.da8f5ba+dfsg-1build1) [universe]
- Constant DataBase indexing and retrieval tools for multi-FASTA files
- centrifuge (1.0.4.2-1) [universe]
- rapid and memory-efficient system for classification of DNA sequences
- cg3 (1.5.1-1) [universe]
- Tools for using the 3rd edition of Constraint Grammar (CG-3)
- cg3-dev (1.5.1-1) [universe]
- Metapackage providing both CG-3 CLI dev tools and dev library
- cgns-convert (3.4.0-5build1) [universe]
- CFD General Notation System - Conversion tools
- cgview (0.0.20100111-7) [universe]
- Circular Genome Viewer
- changeo (1.3.0-3) [universe]
- Repertoire clonal assignment toolkit (Python 3)
- checkit-tiff (1.6.0-1) [universe]
- conformance checker for baseline TIFFs
- chemical-structures (2.2.dfsg.0-20) [universe]
- web service providing molecular structures in open formats
- chemical-structures-data (2.2.dfsg.0-20) [universe]
- set of molecular structures in open formats
- chemonomatopist (0.10.0-1) [universe]
- derive IUPAC systematic names for chemical structures
- chemps2 (1.8.12-4) [universe]
- Executable to call libchemps2-3t64 from the command line
- chemtool (1.6.14-6build2) [universe]
- chemical structures drawing program
- chimeraslayer (20101212+dfsg1-6) [universe]
- detects likely chimeras in PCR amplified DNA
- chip-seq (1.5.5-3) [universe]
- tools performing common ChIP-Seq data analysis tasks
- chip-seq-data (1.5.5-3) [universe]
- tools performing common ChIP-Seq data analysis tasks (data)
- chromhmm (1.26+dfsg-3) [universe]
- Chromatin state discovery and characterization
- chromimpute (1.0.3+dfsg-5) [universe]
- Large-scale systematic epigenome imputation
- cif-linguist (0.4.2-6) [universe]
- transform CIF data among CIF formats and dialects
- cif-tools (1.0.12-4) [universe]
- Suite of tools to manipulate, validate and query mmCIF files
- cif2hkl (1.4.7+ds1-1) [universe]
- Convert crystallographic descriptions into HKL F^2 reflection lists
- circlator (1.5.6-13) [universe]
- circularize genome assemblies
- circos (0.69.9+dfsg-2) [universe]
- plotter for visualizing data
- circos-tools (0.23-1) [universe]
- plotter for visualizing data - helper utilities
- ckon (0.7.1-5build5) [universe]
- automatic build tool for ROOT data analysis software
- clearcut (1.0.9+git20211013.b799afe-1) [universe]
- extremely efficient phylogenetic tree reconstruction
- clonalframe (1.2-11build2) [universe]
- inference of bacterial microevolution using multilocus sequence data
- clonalframeml (1.13-1) [universe]
- Efficient Inference of Recombination in Whole Bacterial Genomes
- clonalorigin (1.0-8build1) [universe]
- inference of homologous recombination in bacteria using whole genome sequences
- clustalo (1.2.4-8build1) [universe]
- General-purpose multiple sequence alignment program for proteins
- clustalw (2.1+lgpl-7) [universe]
- global multiple nucleotide or peptide sequence alignment
- clustalx (2.1+lgpl-9build2) [multiverse]
- Multiple alignment of nucleic acid and protein sequences (graphical interface)
- cmor-tables (3.3-2) [universe]
- MIP tables for the Climate Model Output Rewriter library
- cmtk (3.3.1p2+dfsg-3build1) [universe]
- Computational Morphometry Toolkit
- cnvkit (0.9.12-1) [universe]
- Copy number variant detection from targeted DNA sequencing
- cod-tools (3.11.0+dfsg-1) [universe]
- tools for manipulating CIF format files
- codonw (1.4.4-8) [universe]
- Correspondence Analysis of Codon Usage
- coinor-cbc (2.10.12+ds-1) [universe]
- Coin-or branch-and-cut mixed integer programming solver
- coinor-clp (1.17.10+ds-1) [universe]
- Coin-or linear programming solver
- coinor-csdp (6.2.0-6) [universe]
- Software package for semidefinite programming (binaries)
- coinor-ipopt (3.14.17-3) [universe]
- Interior-Point Optimizer for large-scale nonlinear optimization
- coinor-libbonmin4t64 (1.8.9-3) [universe]
- COIN-OR mixed integer programming
- coinor-libcbc3.1 (2.10.12+ds-1) [universe]
- Coin-or branch-and-cut mixed integer programming solver (shared libraries)
- coinor-libcgl1 (0.60.9+ds-1) [universe]
- COIN-OR Cut Generation Library
- coinor-libclp1 (1.17.10+ds-1) [universe]
- Coin-or linear programming solver (shared libraries)
- coinor-libcoinutils3v5 (2.11.11+ds-5) [universe]
- COIN-OR collection of utility classes (shared libraries)
- coinor-libosi1v5 (0.108.10+ds-2) [universe]
- COIN-OR Open Solver Interface
- coinor-libsymphony3 (5.7.2+dfsg-1) [universe]
- COIN-OR solver for mixed-integer linear programs (shared libraries)
- coinor-libvol1 (1.5.4-4) [universe]
- Coin-or linear programming solver (libraries)
- coinor-symphony (5.7.2+dfsg-1) [universe]
- COIN-OR solver for mixed-integer linear programs
- colmap (3.10-2) [universe]
- Structure-from-Motion and Multi-View Stereo
- comet-ms (2019015+cleaned1-4.1) [universe]
- Tandem mass spectrometry (MS/MS) search engine
- concavity (0.1+dfsg.1-6) [universe]
- predictor of protein ligand binding sites from structure and conservation
- conda-package-handling (2.3.0-1) [universe]
- create and extract conda packages of various formats
- condor (23.9.6+dfsg-2.1build2) [universe]
- distributed workload management system
- condor-annex-ec2 (23.9.6+dfsg-2.1build2) [universe]
- distributed workload management system - single node configuration
- condor-kbdd (23.9.6+dfsg-2.1build2) [universe]
- distributed workload management system - single node configuration
- condor-test (23.9.6+dfsg-2.1build2) [universe]
- distributed workload management system - single node configuration
- condor-upgrade-checks (23.9.6+dfsg-2.1build2) [universe]
- distributed workload management system - single node configuration
- condor-vm-gahp (23.9.6+dfsg-2.1build2) [universe]
- distributed workload management system - single node configuration
- connectome-workbench (2.0.1-1) [universe]
- brain visualization, analysis and discovery tool
- conservation-code (20110309.0-8) [universe]
- protein sequence conservation scoring tool
- coot (1.1.15+dfsg-1build1) [universe]
- model building program for macromolecular crystallography
- coot-data (1.1.15+dfsg-1build1) [universe]
- various data files needed by Coot
- coot-doc (1.1.15+dfsg-1build1) [universe]
- documentation for Coot
- covtobed (1.3.5+dfsg-2) [universe]
- convert the coverage track from a BAM file into a BED file
- covtobed-examples (1.3.5+dfsg-2) [universe]
- example data and scripts for mindthegap
- cp2k (2025.1-1.1) [universe]
- Ab Initio Molecular Dynamics
- cp2k-data (2025.1-1.1) [universe]
- Ab Initio Molecular Dynamics (data files)
- cpptraj (5.1.0+dfsg-5) [universe]
- fast, parallelized molecular dynamics trajectory data analysis
- cpuinfo (0.0~git20250327.39ea79a-1) [universe]
- CPU INFOrmation library (binary utilities)
- crac (2.5.2+dfsg-6build1) [universe]
- integrated RNA-Seq read analysis
- critterding (1.0-beta12.1+dfsg-1) [universe]
- Evolving Artificial Life
- ctdconverter (2.1-8) [universe]
- Convert CTD files into Galaxy tool and CWL CommandLineTool files
- ctffind (4.1.14-3) [universe]
- fast and accurate defocus estimation from electron micrographs
- ctsim (6.0.2-6build3) [universe]
- Computed tomography simulator
- ctsim-help (6.0.2-6build3) [universe]
- Online help file for CTSim
- cufflinks (2.2.1+dfsg.1-10) [multiverse]
- Transcript assembly, differential expression and regulation for RNA-Seq
- cutadapt (4.7-2build2) [universe]
- Clean biological sequences from high-throughput sequencing reads
- cutesv (2.1.1-1) [universe]
- comprehensive discovery of structural variations of genomic sequences
- cwl-upgrader (1.2.12-1) [universe]
- Common Workflow Language standalone document upgrader
- cwlformat (2022.02.18-3) [universe]
- code formatter for Common Workflow Language
- cwltest (2.5.20241122133319-1) [universe]
- Common Workflow Language testing framework
- cwltool (3.1.20250110105449-3) [universe]
- Common Workflow Language reference implementation
- cwltool-doc (3.1.20250110105449-3) [universe]
- Common Workflow Language reference implementation -- docs
- daligner (1.0+git20240119.335105d-3) [universe]
- local alignment discovery between long nucleotide sequencing reads
- damapper (0.0+git20240314.b025cf9-1) [universe]
- long read to reference genome mapping tool
- darknet (0.0.0+git20180914.61c9d02e-3build1) [universe]
- Open Source Neural Networks in C
- dascrubber (1.1-4) [universe]
- alignment-based scrubbing pipeline for DNA sequencing reads
- datalad (1.1.5-2.1) [universe]
- data files management and distribution platform
- dawg (1.2-4) [universe]
- simulate the evolution of recombinant DNA sequences
- dazzdb (1.0+git20250217.a3eefd4-1) [universe]
- manage nucleotide sequencing read data
- dcm2niix (1.0.20241211-1) [universe]
- next generation DICOM to NIfTI converter
- dcmtk (3.6.9-5build1) [universe]
- OFFIS DICOM toolkit command line utilities
- dcmtk-data (3.6.9-5build1) [universe]
- OFFIS DICOM toolkit data files
- debian-astro-logo (5.0) [universe]
- Debian Astronomy Pure Blends Logo
- deblur (1.1.1-4) [universe]
- deconvolution for Illumina amplicon sequencing
- delly (1.1.8-1build4) [universe]
- Structural variant discovery by read analysis
- density-fitness (1.1.3-1) [universe]
- Calculates per-residue electron density scores
- (1.0-6build3) [universe]
- (d)extractor and compression command library
- dh-r (20231212ubuntu1) [universe]
- Debian helper tools for packaging R libraries
- dialign (2.2.1-13) [universe]
- Segment-based multiple sequence alignment
- dialign-tx (1.0.2-15build1) [universe]
- Segment-based multiple sequence alignment
- dialign-tx-data (1.0.2-15build1) [universe]
- Segment-based multiple sequence alignment (data files)
- diamond-aligner (2.1.11-2) [universe]
- accelerated BLAST compatible local sequence aligner
- dimbl (0.17-3build1) [universe]
- Distributed Memory Based Learner
- discosnp (1:2.6.2-4build1) [universe]
- discovering Single Nucleotide Polymorphism from raw set(s) of reads
- disulfinder (1.2.11-12) [universe]
- cysteines disulfide bonding state and connectivity predictor
- disulfinder-data (1.2.11-12) [universe]
- data files for predictor of disulfide bonds in proteins
- dlmodelbox (1.1.1-1) [universe]
- Swiss Army Knife of Deep Learning Models
- dmrgpp (6.06-2build1) [universe]
- Density matrix renormalization group algorithm
- dnaclust (3-7build4) [universe]
- tool for clustering millions of short DNA sequences
- dnapi (1.1-3) [universe]
- adapter prediction for small RNA sequencing - utils
- dnarrange (1.5.3-1.1) [universe]
- Method to find rearrangements in long DNA reads relative to a genome seq
- doris (5.0.3~beta+dfsg-18build1) [multiverse]
- Delft object-oriented radar interferometric software
- dotter (4.44.1+dfsg-7.1build3) [universe]
- detailed comparison of two genomic sequences
- dozzaqueux (3.51-4) [universe]
- simulator for chemical mixtures
- dozzaqueux-data (3.51-4) [universe]
- databases for chemical mixtures
- dpuser (4.3+dfsg-1) [universe]
- Interactive language for handling numbers, strings, and matrices
- drat-trim (0.0~git20240428.effa1dc-2) [universe]
- DART-trim satisfiability proof checker (binary utils)
- drat-trim-examples (0.0~git20240428.effa1dc-2) [universe]
- DART-trim satisfiability proof checker (example files)
- drawxtl (5.5-6.1build2) [universe]
- crystal structure viewer
- drop-seq-testdata (3.0.2+dfsg-1) [universe]
- analyzing Drop-seq data (testdata)
- drop-seq-tools (3.0.2+dfsg-1) [universe]
- analyzing Drop-seq data
- drs4eb (5.0.6+git20211217+ds-4) [universe]
- DRS4 Evaluation Board software
- drslib (0.3.2-1) [universe]
- Command-line tools for the Data Reference Syntax library
- dsdp (5.8-11) [universe]
- Software for Semidefinite Programming
- dssp (4.4.10-1) [universe]
- protein secondary structure assignment based on 3D structure
- dwgsim (0.1.14-4) [universe]
- short sequencing read simulator
- dx (1:4.4.4-19) [universe]
- OpenDX (IBM Visualization Data Explorer) - main package
- dxf2gcode (20240509-2) [universe]
- prepares drawings of parts for automatic machine tools
- dxsamples (4.4.0-5) [universe]
- Sample programs for the OpenDX Data Explorer
- dyssol (1.4.0-2) [universe]
- Tool for dynamic flowsheet simulation. Command line tool
- dyssol-data (1.4.0-2) [universe]
- Tool for dynamic flowsheet simulation. Data files
- dyssol-gui (1.4.0-2) [universe]
- Tool for dynamic flowsheet simulation. GUI
- e-mem (1.0.1-5) [universe]
- Efficient computation of Maximal Exact Matches for very large genomes
- e00compr (1.0.1-8) [universe]
- Program to read/write Arcinfo compressed E00 files
- ea-utils (1.1.2+dfsg-9build2) [universe]
- command-line tools for processing biological sequencing data
- easychem (0.6-9build2) [universe]
- Draw high-quality molecules and 2D chemical formulas
- ecaccess (4.0.1-1.1) [universe]
- clients to access ECMWF facilities
- ecflow-client (5.13.8-1build1) [universe]
- Client tools for Meteorological workflow
- ecflow-server (5.13.8-1build1) [universe]
- Meteorological workflow controller - server
- ecopcr (1.0.1+dfsg-5) [universe]
- estimate PCR barcode primers quality
- ectrans-utils (1.6.1+really1.5.1-1build1) [universe]
- Spherical Harmonics Transforms library - utilities
- edfbrowser (2.12+dfsg-1) [universe]
- viewer for biosignal storage files such as bdf and edf
- edlib-aligner (1.2.7-6build2) [universe]
- edlib sequence alignment tool using edit distance
- edtsurf (0.2009-10) [universe]
- triangulated mesh surfaces for protein structures
- edu-sync (0.3.0-1) [universe]
- Moodle synchronization utility
- eigensoft (8.0.0+dfsg-2build1) [universe]
- reduction of population bias for genetic analyses
- elastix (5.2.0-2ubuntu1) [universe]
- toolbox for rigid and nonrigid registration of images
- elk-lapw (10.4.9-1) [universe]
- All-Electron Density-Functional Electronic Structure Code
- elki (0.7.1-10.1) [universe]
- Data mining algorithm development framework
- elki-dev (0.7.1-10.1) [universe]
- Data mining algorithm development framework - development files
- elph (1.0.1-5) [universe]
- DNA/protein sequence motif finder
- embassy-domainatrix (0.1.660-5) [universe]
- Extra EMBOSS commands to handle domain classification file
- embassy-domalign (0.1.660-5) [universe]
- Extra EMBOSS commands for protein domain alignment
- embassy-domsearch (1:0.1.660-4) [universe]
- Extra EMBOSS commands to search for protein domains
- emboss (6.6.0+dfsg-15ubuntu2) [universe]
- European molecular biology open software suite
- emboss-data (6.6.0+dfsg-15ubuntu2) [universe]
- data files for the EMBOSS package
- emboss-explorer (2.2.0-12) [universe]
- web-based GUI to EMBOSS
- emmax (0~beta.20100307-6) [universe]
- genetic mapping considering population structure
- engauge-digitizer (12.1+ds.1-1build3) [universe]
- interactively extracts numbers from bitmap graphs or maps
- ent (1.2debian-3) [universe]
- pseudorandom number sequence test program
- epics-base (7.0.7+dfsg1-5) [universe]
- EPICS tools
- ergo (3.8.2-1.1) [universe]
- Quantum chemistry program for large-scale calculations
- ergo-data (3.8.2-1.1) [universe]
- Quantum chemistry program for large-scale calculations - data package
- eso-midas (25.05pl1.1-2) [universe]
- European Southern Observatory Munich Image Data Analysis System
- eso-midas-testdata (25.05pl1.1-2) [universe]
- Test data files for ESO-MIDAS
- esorex (3.13.7+ds-1) [universe]
- Execution Tool for European Southern Observatory pipelines
- estscan (3.0.3-6) [universe]
- ORF-independent detector of coding DNA sequences
- esys-particle (2.3.5+dfsg2-11) [universe]
- Software for particle-based numerical modelling (MPI version)
- etsf-io (1.0.4-6) [universe]
- Binary tools to check, merge and read ETSF files
- examl (3.0.22-6build1) [universe]
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
- exonerate (2.4.0-5build2) [universe]
- generic tool for pairwise sequence comparison
- expeyes (5.3.3+repack-2) [universe]
- hardware & software framework for developing science experiments
- expeyes-clib (5.3.3+repack-2) [universe]
- hardware & software framework for developing science experiments
- eyes17 (5.3.3+repack-2) [universe]
- hardware & software framework for developing science experiments
- eyes17-manuals-en (5.3.1+repack-1) [universe]
- Eyes17 User Manuals (English version)
- eyes17-manuals-es (5.3.1+repack-1) [universe]
- Eyes17 User Manuals (Spanish version)
- eyes17-manuals-fr (5.3.1+repack-1) [universe]
- Eyes17 User Manuals (French version)
- eyes17-manuals-ml (5.3.1+repack-1) [universe]
- Eyes17 User Manuals (Malayalam version)
- fast5 (0.6.5-9build2) [universe]
- utilities for manipulating Oxford Nanopore Fast5 files
- fasta3 (36.3.8i.14-Nov-2020-4) [multiverse]
- tools for searching collections of biological sequences
- fasta3-doc (36.3.8i.14-Nov-2020-4) [multiverse]
- user guide for FASTA tools
- fastahack (1.0.0+dfsg-11) [universe]
- utility for indexing and sequence extraction from FASTA files
- fastani (1.33-3build1) [universe]
- Fast alignment-free computation of whole-genome Average Nucleotide Identity
- fastaq (3.17.0-9) [universe]
- FASTA and FASTQ file manipulation tools
- fastdnaml (1.2.2-18) [universe]
- Tool for construction of phylogenetic trees of DNA sequences
- fastlink (4.1P-fix100+dfsg-6) [universe]
- faster version of pedigree programs of Linkage
- fastlink-doc (4.1P-fix100+dfsg-6) [universe]
- Some papers about fastlink
- fastml (3.11-4) [universe]
- maximum likelihood ancestral amino-acid sequence reconstruction
- fastp (0.24.0+dfsg-1) [universe]
- Ultra-fast all-in-one FASTQ preprocessor
- fastq-pair (1.0-3) [universe]
- Rewrites paired end fastq so all reads have a mate to separate out singletons
- fastqc (0.12.1+dfsg-4) [universe]
- quality control for high throughput sequence data
- fastqtl (2.184+v7+dfsg-4build6) [universe]
- Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
- fasttext (0.9.2+ds-8build1) [universe]
- Efficient learning of word representations and sentence classification library
- fasttree (2.1.11-2) [universe]
- phylogenetic trees from alignments of nucleotide or protein sequences
- fcc (2.16-1) [universe]
- Script to compile C/C++ programs and link to Fortran libraries
- feedgnuplot (1.62-1) [universe]
- Pipe-oriented frontend to Gnuplot
- feenox (1.1-1) [universe]
- cloud-first free no-X uniX-like finite-element(ish) tool
- feff85exafs (0.2+dfsg-3) [universe]
- Open Source theoretical EXAFS calculations
- ffindex (0.9.9.9-7build1) [universe]
- simple index/database for huge amounts of small files
- fiat-utils (1.4.1-1build3) [universe]
- Fortran IFS and Arpege Toolkit - utilities
- figtree (1.4.4-6) [universe]
- graphical phylogenetic tree viewer
- filtlong (0.2.1-4) [universe]
- quality filtering tool for long reads of genome sequences
- filtlong-data (0.2.1-4) [universe]
- quality filtering tool for long reads of genome sequences (testdata)
- finalcif (137+dfsg-4) [universe]
- editor for Crystallographic Information Format
- firm-phoenix-ware (4.7.5+repack-2) [universe]
- firmware necessary for boxes issued by project PHOENIX
- fitgcp (0.0.20150429-5) [universe]
- fitting genome coverage distributions with mixture models
- fitscut (1.4.4-6build2) [universe]
- Extract cutouts from FITS image format files
- fitsh (0.9.4-1) [universe]
- Software package for astronomical image processing
- fitspng (2.0-2build3) [universe]
- FITS to PNG converter
- fitsverify (4.22+cfitsio4.6.2-2) [universe]
- transitional dummy package
- fitsverify
- virtual package provided by libcfitsio-bin
- fityk (1.3.2-3build3) [universe]
- general-purpose nonlinear curve fitting and data analysis
- flash (1.2.11-2) [universe]
- Fast Length Adjustment of SHort reads
- flexbar (1:3.5.0-5) [universe]
- flexible barcode and adapter removal for sequencing platforms
- (5.0-17) [universe]
- Trajectory model for tracing air transport phenomena
- flye (2.9.5+dfsg-1) [universe]
- de novo assembler for single molecule sequencing reads using repeat graphs
- fml-asm (0.1+git20221215.85f159e-1) [universe]
- tool for assembling Illumina short reads in small regions
- folialint (2.21.1-1build1) [universe]
- Implementation of the FoLiA document format (C++ headers)
- foma (1:0.10.0+s311.20240712-1) [universe]
- Tools for constructing various finite-state automata
- form (4.3.1+git20240409+ds-2ubuntu2) [universe]
- Symbolic manipulation system
- fractalnow (0.8.2-5build2) [universe]
- Fast, advanced fractal generator
- free42-nologo (3.2.8+ds-1) [universe]
- Free42 is a re-implementation of the HP-42S calculator
- freebayes (1.3.9-1) [universe]
- Bayesian haplotype-based polymorphism discovery and genotyping
- freecad (1.0.0+dfsg-8build2) [universe]
- Extensible Open Source CAx program
- freecad-common (1.0.0+dfsg-8build2) [universe]
- Extensible Open Source CAx program - common files
- freecad-python3 (1.0.0+dfsg-8build2) [universe]
- Extensible Open Source CAx program - Python 3 binaries
- freecontact (1.0.21-15ubuntu1) [universe]
- fast protein contact predictor
- freesasa (2.1.2-4build1) [universe]
- Solvent Accessible Surface Area of biomolecules
- frog (0.34-1build1) [universe]
- tagger and parser for natural languages (runtime)
- frogdata (0.22-2) [universe]
- Data files for Frog
- fsa (1.15.9+dfsg-6) [universe]
- Fast Statistical Alignment of protein, RNA or DNA sequences
- fsm-lite (1.0-8) [universe]
- frequency-based string mining (lite)
- ftools-fv (5.5.3+dfsg-1) [universe]
- Tool for viewing and editing FITS format files
- ftools-pow (5.5.3+dfsg-1) [universe]
- Curve plotting and image display interface tool
- funtools (1.4.8-2) [universe]
- Minimal buy-in FITS utility package
- fxt-tools (0.3.15-1) [universe]
- Multithreaded tracing library
- galileo (0.5.1-11) [universe]
- Utility to securely synchronize a Fitbit device with the Fitbit web service
- galileo-daemon (0.5.1-11) [universe]
- Utility to securely synchronize a Fitbit device - daemon
- galvani (0.38-2) [universe]
- reads data from a device with graphical plots and evaluation
- garli (2.1-9) [universe]
- phylogenetic analysis of molecular sequence data using maximum-likelihood
- garli-examples (2.1-9) [universe]
- phylogenetic analysis of molecular sequence data (examples)
- garli-mpi (2.1-9) [universe]
- phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI)
- garlic (1.6-3) [universe]
- visualization program for biomolecules
- gasic (0.0.r19-8) [universe]
- genome abundance similarity correction
- gasic-examples (0.0.r19-8) [universe]
- genome abundance similarity correction (example data)
- gatb-core (1.4.2+dfsg-13ubuntu1) [universe]
- Genome Analysis Toolbox with de-Bruijn graph
- gatb-core-testdata (1.4.2+dfsg-13ubuntu1) [universe]
- Genome Analysis Toolbox with de-Bruijn graph (test data)
- gausssum (3.0.2-2) [universe]
- parse and display Gaussian, GAMESS, and etc's output
- gbrowse (2.56+dfsg-12build4) [universe]
- GMOD Generic Genome Browser
- gbrowse-calign (2.56+dfsg-12build4) [universe]
- CAlign helper
- gbrowse-data (2.56+dfsg-12build4) [universe]
- Sample data to use GBrowse
- gbutils (6.3-1build1) [universe]
- utilities for command line econometrics
- gchempaint (0.14.17-6.3build1) [universe]
- 2D chemical structures editor for the GNOME2 desktop
- gcrystal (0.14.17-6.3build1) [universe]
- lightweight crystal structures visualizer
- gcu-bin (0.14.17-6.3build1) [universe]
- GNOME chemistry utils (helper applications)
- gdal-bin (3.10.3+dfsg-1build2) [universe]
- Geospatial Data Abstraction Library - Utility programs
- gdal-data (3.10.3+dfsg-1build2) [universe]
- Geospatial Data Abstraction Library - Data files
- gdal-plugins (3.10.3+dfsg-1build2) [universe]
- Geospatial Data Abstraction Library - Plugins
- gdl-astrolib (2022.09.12+dfsg-2) [universe]
- Low-level astronomy software for GDL
- gdl-coyote (2022.04.12-1) [universe]
- GDL library from D. Fannings IDL courses
- gdl-mpfit (1.85+2017.01.03-4) [universe]
- Robust non-linear least squares curve fitting for GDL
- gdpc (2.2.5-16build2) [universe]
- visualiser of molecular dynamic simulations
- gdpc-examples (2.2.5-16build2) [universe]
- example files for the gdpc program
- gelemental (2.0.2-1.1build2) [universe]
- Periodic Table viewer
- gemma (0.98.5+dfsg-3) [universe]
- Genome-wide Efficient Mixed Model Association
- gemmi (0.6.5+ds-3) [universe]
- library for structural biology - executable
- genometester (4.0+git20200511.91cecb5+dfsg-1) [universe]
- toolkit for performing set operations on k-mer lists
- genomethreader (1.7.3+dfsg-10build2) [universe]
- software tool to compute gene structure predictions
- genometools (1.6.5+ds-2.2) [universe]
- versatile genome analysis toolkit
- genometools-common (1.6.5+ds-2.2) [universe]
- shared data files for GenomeTools
- genomicsdb-tools (1.5.4-5) [universe]
- sparse array storage library for genomics (tools)
- gentle (1.9.5~alpha2+dfsg1-2build1) [multiverse]
- suite for molecular cloning and sequence analysis
- geographiclib-tools (2.5-1) [universe]
- C++ library to solve some geodesic problems -- tools
- geotiff-bin (1.7.4-1) [universe]
- GeoTIFF (geografic enabled TIFF) library -- tools
- getdata (0.2-4) [universe]
- management of external databases
- gff2aplot (2.0-15) [universe]
- pair-wise alignment-plots for genomic sequences in PostScript
- gff2ps (0.98l-6) [universe]
- produces PostScript graphical output from GFF-files
- gffread (0.12.7-8) [universe]
- GFF/GTF format conversions, region filtering, FASTA sequence extraction
- gfsview-batch (20121130+dfsg-8.1build4) [universe]
- batch-version of viewer for Gerris simulation files
- gftl-dev (1.3.0+is-really-1.2.7-1) [universe]
- Containers and iterators for Fortran
- gftl-shared-dev (1.0.7-2) [universe]
- Common gFTL containers of Fortran intrinsic types
- ggd-utils (1.0.0+ds-1build1) [universe]
- programs for use in ggd
- ghkl (5.1.3-1build1) [universe]
- diffractometer computation control application
- ghmm (0.9~rc3-11.1) [universe]
- General Hidden-Markov-Model library - tools
- ginga (5.3.0-1) [universe]
- Astronomical image viewer
- gjh-asl-json (0.0+git20210628.867c5da-1) [universe]
- gjh solver, like solver from AMPL Library
- glam2 (1064-10) [universe]
- gapped protein motifs from unaligned sequences
- glgrib-data (1.0-4build2) [universe]
- Display GRIB2 fields using OpenGL (data for glgrib)
- glgrib-egl (1.0-4build2) [universe]
- Render geophysical fields encoded in GRIB edition 2 using OpenGL
- glgrib-glfw (1.0-4build2) [universe]
- Interactive display for geophysical fields encoded in GRIB2
- glgrib-shaders (1.0-4build2) [universe]
- Display GRIB2 fields using OpenGL (shaders for glgrib)
- glgrib-testdata (1.0-4build2) [universe]
- Display GRIB2 fields using OpenGL (test data for glgrib)
- glgrib-tk (1.0-4build2) [universe]
- Display GRIB2 fields using OpenGL (Perl/Tk interface)
- glvis (4.3.2-1) [universe]
- accurate and flexible finite element visualization
- gmap (2024-11-20+ds-2) [universe]
- spliced and SNP-tolerant alignment for mRNA and short reads
- gmt (6.5.0+dfsg-4) [universe]
- Generic Mapping Tools
- gmt-common (6.5.0+dfsg-4) [universe]
- Generic Mapping Tools - Architecture-independent files
- gmt-dcw (2.2.0-1) [universe]
- Digital Chart of the World (DCW) for GMT
- gmt-gshhg (2.3.7-7) [universe]
- Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
- gmt-gshhg-full (2.3.7-7) [universe]
- Full resolution coastlines for the Generic Mapping Tools
- gmt-gshhg-high (2.3.7-7) [universe]
- High resolution coastlines for the Generic Mapping Tools
- gmt-gshhg-low (2.3.7-7) [universe]
- Low resolution coastlines for the Generic Mapping Tools
- gmtsar (6.5+ds-3) [universe]
- InSAR processing system based on Generic Mapping Tools - metapackage
- gmtsar-core (6.5+ds-3) [universe]
- InSAR processing system based on Generic Mapping Tools - core
- gmtsar-data (6.5+ds-3) [universe]
- InSAR processing system based on Generic Mapping Tools - data
- gmtsar-scripts (6.5+ds-3) [universe]
- InSAR processing system based on Generic Mapping Tools - scripts
- gnuastro (0.23-2build1) [universe]
- GNU Astronomy Utilities programs
- goby-java (3.3.1+dfsg2-11) [universe]
- next-generation sequencing data and results analysis tool
- golang-github-brentp-gsort-dev (0.1.4-3build1) [universe]
- library package for gsort
- golang-github-gogetdata-ggd-utils-dev (1.0.0+ds-1build1) [universe]
- library for use in ggd
- gpaw (25.1.0-1build1) [universe]
- DFT and beyond within the projector-augmented wave method
- gpaw-data (24.11.0-1) [universe]
- gpaw datasets/setups
- gperiodic (3.0.3-2) [universe]
- periodic table application
- gpx (2.6.8-1) [universe]
- Gcode to x3g conversion post processor
- grabix (0.1.7-5) [universe]
- wee tool for random access into BGZF files
- grads (3:2.2.1-9build2) [universe]
- Grid Analysis and Display System for earth science data
- graphlan (1.1.3-6) [universe]
- circular representations of taxonomic and phylogenetic trees
- grass (8.4.1-1) [universe]
- Geographic Resources Analysis Support System (GRASS GIS)
- grass-core (8.4.1-1) [universe]
- GRASS GIS core components
- grass-doc (8.4.1-1) [universe]
- GRASS GIS user documentation
- grass-gui (8.4.1-1) [universe]
- GRASS GIS graphical user interfaces
- gravit (0.5.1+dfsg-6build2) [universe]
- visually stunning gravity simulator
- gravit-data (0.5.1+dfsg-6build2) [universe]
- data files for Gravit
- gri (2.12.27-1.2build1) [universe]
- a language for scientific illustration
- grinder (0.5.4-6) [universe]
- Versatile omics shotgun and amplicon sequencing read simulator
- gromacs (2025.2-1) [universe]
- Molecular dynamics simulator, with building and analysis tools
- gromacs-data (2025.2-1) [universe]
- GROMACS molecular dynamics sim, data and documentation
- groops (0+git20240830+ds-1build2) [multiverse]
- software toolkit for gravity field recovery and GNSS processing
- groops-gui (0+git20240830+ds-1build2) [multiverse]
- software toolkit for gravity field recovery and GNSS processing (GUI)
- gsort (0.1.4-3build1) [universe]
- sort genomic data
- gubbins (3.4-2) [universe]
- phylogenetic analysis of genome sequences
- gvb (1.4-1.1) [universe]
- visual simulator of 1 and 2-dimensional vibrations
- gwama (2.2.2+dfsg-6) [universe]
- Genome-Wide Association Meta Analysis
- gwyddion (2.67-1build1) [universe]
- Scanning Probe Microscopy visualization and analysis tool
- gwyddion-common (2.67-1build1) [universe]
- architecture-independent files for Gwyddion SPM analysis tool
- gyoto (2.0.2-6build4) [universe]
- General relativistic geodesic integration and ray-tracing
- gyoto-bin (2.0.2-6build4) [universe]
- General relativistic ray-tracing command-line interface
- h5utils (1.13.2-2) [universe]
- HDF5 files visualization tools
- harminv (1.4.2-1build1) [universe]
- extraction of complex frequencies and amplitudes from time series
- harvest-tools (1.3-8build6) [universe]
- archiving and postprocessing for reference-compressed genomic multi-alignments
- hdf-compass (0.7~b15-1) [universe]
- viewer for HDF5 and related formats
- hdf5-filter-plugin (0.0~git20221111.49e3b65-5) [universe]
- external filters for HDF5: LZ4, BZip2
- hdf5-filter-plugin-blosc-serial (1.0.1-1) [universe]
- blocking, shuffling and lossless compression library
- hdf5-filter-plugin-zfp-serial (1.1.1-2build3) [universe]
- Compression plugin for the HDF5 library using ZFP compression
- hdf5-helpers (1.14.5+repack-3build1) [universe]
- HDF5 - Helper tools
- hdf5-tools (1.14.5+repack-3build1) [universe]
- HDF5 - Runtime tools
- herisvm (0.9.0-2) [universe]
- machine learning tools for classification algorithms
- heudiconv (1.3.2-1) [universe]
- DICOM converter with support for structure heuristics
- hfst (3.16.2-1) [universe]
- Helsinki Finite-State Transducer Technology
- hfst-ospell (0.5.4-1build4)
- Spell checker library and tool based on HFST
- hhsuite (3.3.0+ds-8) [universe]
- sensitive protein sequence searching based on HMM-HMM alignment
- hhsuite-data (3.3.0+ds-8) [universe]
- sensitive protein sequence searching based on HMM-HMM alignment (data)
- highs (1.10.0+ds-1) [universe]
- High performance linear optimization software
- hilive (2.0a-4build2) [universe]
- realtime alignment of Illumina reads
- hinge (0.5.0-7build2) [universe]
- long read genome assembler based on hinging
- hisat2 (2.2.1-5) [universe]
- graph-based alignment of short nucleotide reads to many genomes
- hmmer (3.4+dfsg-2) [universe]
- profile hidden Markov models for protein sequence analysis
- hmmer2 (2.3.2+dfsg-12) [universe]
- profile hidden Markov models for protein sequence analysis
- hodie (1.5.0-4) [universe]
- prints the date in Latin
- horae (071~svn537+ds1-2) [multiverse]
- interactive graphical processing and analysis of EXAFS data
- hpcc (1.5.0-4build2) [universe]
- HPC Challenge benchmark
- htcondor (23.9.6+dfsg-2.1build2) [universe]
- transitional dummy package
- htcondor-annex-ec2 (23.9.6+dfsg-2.1build2) [universe]
- transitional dummy package
- htcondor-dev (23.9.6+dfsg-2.1build2) [universe]
- transitional dummy package
- htcondor-doc (23.9.6+dfsg-2.1build2) [universe]
- transitional dummy package
- htcondor-test (23.9.6+dfsg-2.1build2) [universe]
- transitional dummy package
- htcondor-upgrade-checks (23.9.6+dfsg-2.1build2) [universe]
- transitional dummy package
- hts-nim-tools (0.2.1-4) [universe]
- tools biological sequences: bam-filter, count-reads, vcf-check
- hyphy-common (2.5.69+dfsg-1) [universe]
- Hypothesis testing using Phylogenies (common files)
- hyphy-mpi (2.5.69+dfsg-1) [universe]
- Hypothesis testing using Phylogenies (MPI version)
- hyphy-pt (2.5.69+dfsg-1) [universe]
- Hypothesis testing using Phylogenies (pthreads version)
- idba (1.1.3-8) [universe]
- iterative De Bruijn Graph short read assemblers
- (1.1.3-8) [universe]
- iterative De Bruijn Graph short read assemblers (extra tools)
- idseq-bench (0.0~git20210602.27fb6dc-2) [universe]
- Benchmark generator for the IDseq Portal
- ifeffit (2:1.2.11d-12.7) [multiverse]
- Interactive XAFS analysis program
- igblast (1.20.0-3) [universe]
- Immunoglobulin and T cell receptor variable domain sequence analysis
- igor (1.4.0+dfsg-5build1) [universe]
- infers V(D)J recombination processes from sequencing data
- igv (2.18.5+dfsg-1) [universe]
- Integrative Genomics Viewer
- iitii (0.0+git20191030.85209e0-3) [universe]
- Implicit Interval Tree with Interpolation Index
- illustrate (0.0+git20200923.217db48-2) [universe]
- cartoonish representations of large biological molecules
- imagej (1.54g-1) [universe]
- Image processing program with a focus on microscopy images
- imview (1.1.9h-4build3) [universe]
- Image viewing and analysis application
- indelible (1.03-6) [universe]
- powerful and flexible simulator of biological evolution
- indi-aagcloudwatcher-ng (1.7+20230106180155-1) [universe]
- INDI driver for the AAG Cloud Watcher
- indi-aok (2.0+20221222093242-1build1) [universe]
- INDI driver for AOK Skywalker
- indi-apogee (1.9+20221223184417-2) [universe]
- INDI driver for Apogee CCDs and Filter Wheels
- indi-armadillo-platypus (1.0+20221226082641-2) [universe]
- INDI driver for Lunatico Astronomia Armadillo and Platypus
- indi-asi (2.2+20221225102500-1build2) [multiverse]
- INDI Driver for ZWO Optics ASI cameras
- indi-astrolink4 (0.1+20221223182627-1) [universe]
- INDI driver for Astrolink 4.0 devices
- indi-astromechfoc (0.2+20221223181816-1) [universe]
- INDI driver for Astromechanics Canon Lens Controller
- indi-avalon (1.12+20221223132122-1) [universe]
- INDI driver for Avalon Instruments mounts
- indi-beefocus (0.1+20221222010828-1) [universe]
- INDI driver for Bee Focus
- indi-bresserexos2 (1.0+20221223130124-1build1) [universe]
- INDI driver for Exos II GoTo Telescope Mount
- indi-dreamfocuser (2.1+20221223125100-1) [universe]
- INDI driver for DeamFocuser focuser
- indi-dsi (0.4+20221223123028-2) [universe]
- INDI driver for Meade DSI Pro I/II/III
- indi-eqmod (1.0+20230126190232-3) [universe]
- INDI EQMod Driver
- indi-ffmv (0.3+20221223120905-2) [universe]
- INDI driver for Point Grey Firefly MV cameras
- indi-fishcamp (1.1-2) [multiverse]
- INDI driver for Fishcamp Engineering CCD
- indi-fli (1.5+20221225141318-1build2) [universe]
- INDI driver for FLI CCD & Focuser
- indi-gige (0.1+20221223115700-2build1) [universe]
- INDI driver for GigE machine vision cameras
- indi-gphoto (3.2+20221221172841-2build2) [universe]
- INDI driver for GPhoto (DSLR) Cameras
- indi-gpsd (0.5+20221222000619-1build3) [universe]
- INDI driver for gpsd GPS daemon
- indi-gpsnmea (0.2+20221223114018-1) [universe]
- INDI driver for GPS NMEA streams
- indi-inovaplx (1.4+20221221105828-2) [multiverse]
- INDI driver for iNova PLX Cameras
- indi-limesdr (1.4+20221223110308-1build1) [universe]
- INDI driver for LimeSDR (LMS7) Receiver
- indi-maxdomeii (1.3+20221223105522-1) [universe]
- INDI driver for MaxDome II dome control system
- indi-mgen (0.1+20221222184336-1) [universe]
- INDI driver for Lacerta MGen Autoguider
- indi-mi (1.8-1) [multiverse]
- INDI driver for cameras made by Moravian Instruments
- indi-nexdome (1.5+20221222183051-1) [universe]
- INDI driver for NexDome
- indi-nightscape (1.0.6+20221222181314-2) [universe]
- INDI driver for Celestron Nightscape 8300
- indi-orion-ssg3 (0.1+20221222180647-2) [universe]
- INDI Driver for Orion StarShoot G3 and G4 cameras
- indi-pentax (1.0+20221221102411-2) [multiverse]
- INDI driver for Pentax cameras
- indi-playerone (0.9+20230105184731-3) [multiverse]
- INDI driver for cameras made by Playerone
- indi-rtklib (1.0+20221222172722-1) [universe]
- INDI driver for precise positioning with RTKLIB
- indi-sbig (2.1+20221220234924-4build2) [multiverse]
- INDI driver for SBIG cameras
- indi-shelyak (1.0+20221222171819-1) [universe]
- INDI driver for Shelyak and Alpy Spectrograph
- indi-spectracyber (1.3+20221222164952-1build1) [universe]
- INDI driver for hydrogen line spectrometer
- indi-starbook (0.8+20221222163625-1build2) [universe]
- INDI driver for Vixen Starbook telescope controllers
- indi-starbook-ten (0.1-2build1) [universe]
- INDI driver for Vixen Starbook Ten telescope controllers
- indi-sx (1.16+20221222162728-2) [universe]
- INDI driver for Starlight Xpress CCD and Filter Wheel
- indi-talon6 (2.0+20221222160901-1) [universe]
- INDI driver for Talon6 Roll Off Roof
- indi-webcam (1.0+20221222161740-1build2) [universe]
- INDI Driver for web cameras
- indi-weewx-json (1.0-1build2) [universe]
- INDI driver for the WeeWX Weather Station
- indigo-utils (1.2.3-3.1build1) [universe]
- Organic Chemistry Toolkit Utilities
- infernal (1.1.5-3) [universe]
- inference of RNA secondary structural alignments
- inhomog (0.1.9.2-1build4) [universe]
- kinematical backreaction and average scale factor evolution
- inkscape-speleo (1.8-4) [universe]
- Inkscape plugin to help draw surveys
- inkscape-survex-export (2.0-1) [universe]
- Inkscape plugin to digitise printed surveys
- insilicoseq (2.0.1-1) [universe]
- sequencing simulator producing realistic Illumina reads
- ipig (0.0.r5-5) [universe]
- integrating PSMs into genome browser visualisations
- iqtree (2.0.7+dfsg-1build3) [universe]
- efficient phylogenetic software by maximum likelihood
- iraf (2.18.1-2) [universe]
- Image Reduction and Analysis Facility
- iraf-dev (2.18.1-2) [universe]
- Image Reduction and Analysis Facility (development files)
- iraf-fitsutil (2024.07.06-2) [universe]
- FITS utilities for IRAF
- iraf-mscred (5.05+2018.07.09-4) [universe]
- CCD mosaic reduction package for IRAF
- iraf-noao (2.18.1-2) [universe]
- IRAF NOAO data reduction package
- iraf-noao-dev (2.18.1-2) [universe]
- IRAF NOAO data reduction package (development files)
- iraf-rvsao (2.8.5-2build2) [universe]
- IRAF package to obtain radial velocities from spectra
- iraf-sptable (1.0~pre20180612-3build2) [universe]
- IRAF package for Tabular Spectra
- iraf-st4gem (1.0+ds-3) [universe]
- Selected tools from the Space Telescope Science Data Analysis System
- iraf-wcstools (3.9.7-2) [universe]
- Handle the WCS of a FITS image (IRAF package)
- iraf-xdimsum (2003.01.24-2) [universe]
- Deep Infrared Mosaicing Software
- ismrmrd-schema (1.8.0-2build8) [universe]
- schema for ISMRMRD
- ismrmrd-tools (1.8.0-2build8) [universe]
- command-line tools for ISMRMRD
- iso2mesh-demos (1.9.8+ds-2) [multiverse]
- sample files and demo scripts for Iso2Mesh toolbox
- iso2mesh-tools (1.9.8+ds-2) [multiverse]
- 3D mesh generation and repairing utilities
- iva (1.0.11+ds-6) [universe]
- iterative virus sequence assembler
- ivar (1.4.3+dfsg-2ubuntu1) [universe]
- functions broadly useful for viral amplicon-based sequencing
- jaligner (1.0+dfsg-11) [universe]
- Smith-Waterman algorithm with Gotoh's improvement
- jalview (2.11.4.1+dfsg-1) [universe]
- multiple alignment editor
- jblas (1.2.5+dfsg-1) [universe]
- fast linear algebra library for Java
- jbmc (6.6.0-4) [universe]
- bounded model checker for Java programs
- jellyfish (2.3.1-4build1) [universe]
- count k-mers in DNA sequences
- jellyfish-examples (2.3.1-4build1) [universe]
- count k-mers in DNA sequences (examples for testing)
- jellyfish1 (1.1.11-10) [universe]
- count k-mers in DNA sequences
- jemboss (6.6.0+dfsg-15ubuntu2) [universe]
- graphical user interface to EMBOSS
- jmodeltest (2.1.10+dfsg-12) [universe]
- HPC selection of models of nucleotide substitution
- jmol (16.2.33+dfsg-1) [universe]
- Molecular Viewer
- jnifti-demos (0.6-3) [multiverse]
- sample files and demo scripts for JNIfTI toolbox
- jsamp (1.3.9-1) [universe]
- Java Simple Application Messaging Protocol tool for VO
- jube (2.7.1-3) [universe]
- JUBE Benchmarking Environment
- jupyter-notebook (6.4.13-5ubuntu0.1) [universe]
- Jupyter interactive notebook
- kalign (1:3.4.0-1) [universe]
- Global and progressive multiple sequence alignment
- kallisto (0.48.0+dfsg-4build1) [universe]
- near-optimal RNA-Seq quantification
- kallisto-examples (0.48.0+dfsg-4build1) [universe]
- near-optimal RNA-Seq quantification (example data)
- kalzium (4:25.08.1-0ubuntu1) [universe]
- periodic table and chemistry tools
- kalzium-data (4:25.08.1-0ubuntu1) [universe]
- data files for Kalzium
- kameleon (2.11.0-1) [universe]
- Mindful appliance builder
- kaptive (2.0.8-1) [universe]
- obtain information about K and O types for Klebsiella genome assemblies
- kaptive-data (2.0.8-1) [universe]
- reference data for kaptive for Klebsiella genome assemblies
- kaptive-example (2.0.8-1) [universe]
- example data for kaptive for Klebsiella genome assemblies
- kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) [universe]
- detection of DNA modifications
- kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-6) [universe]
- detection of DNA modifications -- data files
- king-probe (02.21-1) [universe]
- Evaluate and visualize protein interatomic packing
- kissat (4.0.2-1) [universe] [ports]
- Keep it simple and clean bare metal SAT solver
- kissplice (2.6.7-2) [universe]
- Detection of various kinds of polymorphisms in RNA-seq data
- kleborate (2.4.1-5) [universe]
- tool to screen Klebsiella genome assemblies
- kleborate-examples (2.4.1-5) [universe]
- tool to screen Klebsiella genome assemblies (example data)
- klustakwik (3.0.2+ds-2) [universe]
- automatic sorting of the samples (spikes) into clusters
- kma (1.4.21-1) [universe]
- mapping genomic sequences to raw reads directly against redundant databases
- kmc (3.2.4+dfsg-1) [universe]
- count kmers in genomic sequences
- kmer (0~20150903+r2013-9build1) [universe]
- suite of tools for DNA sequence analysis
- kmer-examples (0~20150903+r2013-9build1) [universe]
- sample data for kmer suite of tools for DNA sequence analysis
- kmerresistance (2.2.0-4ubuntu1) [universe]
- correlates mapped genes with the predicted species of WGS samples
- kokkos (4.5.01-1.2) [universe]
- C++ Performance Portability Programming
- konclude (0.7.0+1138+git20220514~dfsg-1build3) [universe]
- tableau-based description logic reasoner for the semantic web
- kraken (1.1.1-4) [universe]
- assigning taxonomic labels to short DNA sequences
- kraken2 (2.1.3-1) [universe]
- taxonomic classification system using exact k-mer matches
- kst (2.0.8-6build2) [universe]
- scientific data plotting tool
- kstars (5:3.7.3+really3.6.2-0ubuntu1) [universe]
- desktop planetarium, observation planning and telescope control
- kstars-data (5:3.7.3+really3.6.2-0ubuntu1) [universe]
- data files for KStars desktop planetarium
- (1.1r1-9.2) [universe]
- Tycho-2 star catalog for KStars
- lagan (2.0-10) [universe]
- highly parametrizable pairwise global genome sequence aligner
- lamarc (2.1.10.1+dfsg-7build3) [universe]
- Likelihood Analysis with Metropolis Algorithm using Random Coalescence
- lamassemble (1.7.2-2) [universe]
- Merges overlapping "long" DNA reads into a consensus sequences
- lambda-align (1.0.3-6) [universe]
- Local Aligner for Massive Biological DatA
- lambda-align2 (2.0.1-3) [universe]
- Local Aligner for Massive Biological DatA - v2
- lammps (20250204+dfsg.1-2) [universe]
- Molecular Dynamics Simulator
- last-align (1609-1) [universe]
- genome-scale comparison of biological sequences
- lastz (1.04.52-1) [universe]
- pairwise aligning DNA sequences
- lastz-examples (1.04.52-1) [universe]
- pairwise aligning DNA sequences (examples and test scripts)
- leaff (0~20150903+r2013-9build1) [universe]
- biological sequence library utilities and applications
- lefse (1.1.2-2) [universe]
- determine features of organisms, clades, taxonomic units, genes
- lexd (1.3.5-2) [universe]
- Lexicon compiler for non-suffixational morphologies
- libarb (6.0.6-8) [multiverse]
- phylogenetic sequence analysis suite - libraries
- libatlas-ecmwf-utils (0.42.0-1build1) [universe]
- Numerical weather prediction and climate modelling library - utilities
- libbio-db-hts-perl (3.01-5) [universe]
- Perl interface to the HTS library
- libbiojava-java (1:1.9.7+dfsg-2) [universe]
- Java API to biological data and applications (default version)
- libca4.14.2 (7.0.7+dfsg1-5) [universe]
- EPICS channel access client library
- libcassie1v5 (1.0.9-4build6) [universe]
- library implementating search algorithms
- libcg3-1 (1.5.1-1) [universe]
- Runtime for CG-3
- libchemicaltagger-java (1.6.2-4) [universe]
- tool for semantic text-mining in chemistry
- libclhep2.1t64 (2.1.4.1+dfsg-1.2build1) [universe]
- CLHEP: A Class Library for High Energy Physics
- libcom3.22.0 (7.0.7+dfsg1-5) [universe]
- EPICS common library
- libdbcsr-dev (2.8.0-3) [universe]
- Distributed Block Compressed Sparse Row matrix library
- libdivsufsort3 (2.0.1-6) [universe]
- fast suffix array construction
- libdlpack-dev (1.0-1) [universe]
- Open In Memory Tensor Structure
- libdyssol1.0t64 (1.4.0-2) [universe]
- Tool for dynamic flowsheet simulation. Shared libraries
- libeccodes-data (2.41.0-1) [universe]
- GRIB and BUFR enecoding/encoding software library - data
- libeckit-utils (1.29.1+really.1.28.7-1) [universe]
- C++ toolkit for ECMWF tools and applications - development files
- libej0 (5.3.3+repack-2) [universe]
- hardware & software framework for developing science experiments
- libfckit-utils (0.13.4-1build1) [universe]
- Library Fortran toolkit for interoperating Fortran with C/C++
- libgfsgl0t64 (20121130+dfsg-8.1build4) [universe]
- graphical viewer for Gerris simulation files. Shared library
- libggml (0.0~git20250712.d62df60-1) [universe]
- Tensor library for machine learning
- libggml-blas (0.0~git20250712.d62df60-1) [universe]
- Tensor library for machine learning - BLAS backend
- libggml-cpu (0.0~git20250712.d62df60-1) [universe]
- Tensor library for machine learning - CPU backend
- libggml-hip (0.0~git20250712.d62df60-1) [universe]
- Tensor library for machine learning - HIP backend
- libggml-vulkan (0.0~git20250712.d62df60-1) [universe]
- Tensor library for machine learning - Vulkan backend
- libgoby-io-java (3.3.1+dfsg2-11) [universe]
- IO API for goby
- libhdf5-jni (1.14.5+repack-3build1) [universe]
- native library used by libhdf5-java
- libideep-dev (0.0~git20250115.9873ffc-2) [universe]
- Intel's mkldnn/dnnl wrapper for pytorch
- libinchi-bin (1.07.3+dfsg-1) [universe]
- International Chemical Identifier (InChI) algorithm (executable)
- libjgrapht-java (1.5.2-1) [universe]
- Java library of graph theory data structures and algorithms
- libjgrapht-java
- virtual package provided by libjgrapht0.8-java
- liblammps-dev (20250204+dfsg.1-2) [universe]
- Molecular Dynamics Simulator (dev files)
- liblammps0t64 (20250204+dfsg.1-2) [universe]
- Molecular Dynamics Simulator (shared library)
- liblemon-utils (1.3.1+dfsg-6build1) [universe]
- Library for Efficient Modeling and Optimization in Networks (utilities)
- libliggghts3t64 (3.8.0+repack1-13) [universe]
- Open Source DEM Particle Simulation Software. Shared library
- liblinear-tools (2.3.0+dfsg-5build1) [universe]
- Standalone applications for LIBLINEAR
- liblorene-debian1t64 (0.0.0~cvs20161116+dfsg-2) [universe]
- liblorene shared library
- liblorene-export-debian0t64 (0.0.0~cvs20161116+dfsg-2) [universe]
- liblorene_export shared library
- liblorenef77-debian1t64 (0.0.0~cvs20161116+dfsg-2) [universe]
- liblorenef77 shared library
- libmcpl-dev (1.3.2-3.1build1) [universe]
- Monte Carlo Particle Lists - development files
- libmcpl1 (1.3.2-3.1build1) [universe]
- Monte Carlo Particle Lists - library
- libmstoolkit-tools (82-7.2) [universe]
- libraries for manipulating mass spectrometry data - tools
- libncarg-bin (6.6.2.dfsg.1-10build2) [universe]
- NCAR command-language library - development tools
- libncarg-data (6.6.2.dfsg.1-10build2) [universe]
- NCAR command-language library - Data
- libocas-tools (0.97+dfsg-8build1) [universe]
- Standalone applications implementing the OCAS solver
- libonnx-dev (1.17.0-3build1) [universe]
- Open Neural Network Exchange (ONNX) (dev)
- libonnx-testdata (1.17.0-3build1) [universe]
- Open Neural Network Exchange (ONNX) (test data)
- libonnx1t64 (1.17.0-3build1) [universe]
- Open Neural Network Exchange (ONNX) (libs)
- libopenfoam (1912.200626-3build1) [universe]
- Open source toolbox for Computational Fluid Dynamics (CFD) - libraries
- libopm-simulators-bin (2025.04+ds-2) [universe]
- Parallel porous media / reservoir simulators -- applications
- libopm-upscaling-bin (2025.04+ds-1) [universe]
- Porous media upscaling tools -- applications
- liboscar4-java (5.2.0+dfsg-3) [universe]
- automated annotation of chemistry in scientific articles
- libphitsmcpl1 (1.3.2-3.1build1) [universe]
- Monte Carlo Particle Lists - PHITS library
- libpluto-jpl-eph-dev (0.0~git20180228-1.1build1) [universe]
- development files to interact with JPL ephemeres data
- libpluto-lunar-dev (0.0~git20180825.e34c1d1-1build1) [universe]
- development files for astronomical Lunar library
- libpwiz-tools (3.0.18342-4.2build1) [universe]
- ProteoWizard command line tools
- libqgis-customwidgets (3.40.8+dfsg-1~exp1) [universe]
- QGIS custom widgets for Qt Designer
- librasterlite2-1 (1.1.0~beta1-4build1) [universe]
- library for huge raster coverages using a SpatiaLite DBMS
- libsigmf (1.0.2-3) [universe]
- SigMF data format handling library
- libsilo-bin (4.11-6.1build4) [universe]
- Utilities to manipulate libsilo files
- libsqlite3-mod-virtualpg (2.0.1-4build1) [universe]
- Loadable dynamic extension to both SQLite and SpatiaLite
- libssm-bin (1.4.0-2build1) [universe]
- macromolecular superposition library - binaries
- libsswmcpl1 (1.3.2-3.1build1) [universe]
- Monte Carlo Particle Lists - SSW library
- libstxxl1t64 (1.4.1-4.1build1) [universe]
- C++ Standard Template Library for extra large datasets
- libtorch-test (2.6.0+dfsg-7) [universe]
- Tensors and Dynamic neural networks in Python (Test Binaries)
- libtrexio0 (2.2.3-3build3) [universe]
- TREX I/O library for efficient data I/O in quantum chemistry.
- libuhd4.8.0-dpdk-tests (4.8.0.0+ds1-2ubuntu2.1) [universe]
- universal hardware driver for Ettus Research products - DPDK tests
- libvcflib-tools (1.0.12+dfsg-1) [universe]
- C++ library for parsing and manipulating VCF files (tools)
- libvdjtools-java (1.2.1+git20190311+repack-2) [multiverse]
- Java library of vdjtools
- libwannier90-dev (3.1.0+ds-10) [universe]
- Maximally Localized Wannier Functions - development library
- libxgboost-predictor-java (0.3.1+dfsg-2) [universe]
- Java implementation of XGBoost predictor for online prediction tasks
- libxy-bin (1.6-3.1build1) [universe]
- xylib - utilities
- libyade (2025.2.0-1build1) [universe]
- Platform for discrete element modeling. Libraries
- liggghts (3.8.0+repack1-13) [universe]
- Open Source DEM Particle Simulation Software.
- lighter (1.1.3-1) [universe]
- fast and memory-efficient sequencing error corrector
- litl-tools (0.2-2) [universe]
- Lightweight Trace Library - tools
- llama.cpp (5882+dfsg-2) [universe]
- LLM inference in C/C++
- llm (0.23-1) [multiverse]
- CLI utility and Python library for interacting with Large Language Models
- loki (2.4.7.4-12) [universe]
- MCMC linkage analysis on general pedigrees
- loki-doc (2.4.7.4-12) [universe]
- MCMC linkage analysis on general pedigrees (PS manual)
- looktxt (1.4.1-3) [universe]
- Convert free format text file into scientific data formats
- looptools (2.16-1) [universe]
- Integral Evaluator of One-loop Feynman Diagram
- lorene (0.0.0~cvs20161116+dfsg-2) [universe]
- framework for numerical relativity
- lorene-codes-src (0.0.0~cvs20161116+dfsg-2) [universe]
- source files of LORENE-based codes
- ltrsift (1.0.2-10) [universe]
- postprocessing and classification of LTR retrotransposons
- lttoolbox-dev (3.8.2-1) [universe]
- Development tools and library for lttoolbox
- lucy (1.20-6) [universe]
- DNA sequence quality and vector trimming tool
- lumpy-sv (0.3.1+dfsg-7build3) [universe]
- general probabilistic framework for structural variant discovery
- lumpy-sv-examples (0.3.1+dfsg-7build3) [universe]
- general probabilistic framework for structural variant discovery (data)
- lutefisk (1.0.7+dfsg-7) [universe]
- de novo interpretation of peptide CID spectra
- lxi-tools (2.8-1) [universe]
- LAN eXtensions for Instrumentation (LXI) software interface
- m2kcli (0.9.0-3build1) [universe]
- ADI tool for interfacing with the ADALM2000
- macs (3.0.2-1build3) [universe]
- Model-based Analysis of ChIP-Seq on short reads sequencers
- macsyfinder (2.1.4-1) [universe]
- detection of macromolecular systems in protein datasets
- maffilter (1.3.1+dfsg-6build2) [universe]
- process genome alignment in the Multiple Alignment Format
- maffilter-examples (1.3.1+dfsg-6build2) [universe]
- process genome alignment in the Multiple Alignment Format (example data)
- mafft (7.525-1) [universe]
- Multiple alignment program for amino acid or nucleotide sequences
- malt (0.5.2-3) [universe]
- sequence alignment and analysis tool to process sequencing data
- mandelbrot-solver (3.2.1-11) [universe]
- Solver for Mandelbrot polynomials based on MPSolve
- mapdamage (2.2.2+dfsg-1) [universe]
- tracking and quantifying damage patterns in ancient DNA sequences
- mapsembler2 (2.2.4+dfsg1-4) [universe]
- bioinformatics targeted assembly software
- maq (0.7.1-10) [universe]
- maps short fixed-length polymorphic DNA sequence reads to reference sequences
- maqview (0.2.5-12) [universe]
- graphical read alignment viewer for short gene sequences
- mash (2.3+dfsg-6build2) [universe]
- fast genome and metagenome distance estimation using MinHash
- massxpert (8.5.0-2) [universe]
- transitional package for massxpert -> massxpert2
- massxpert-data (7.0.0-2) [universe]
- polymer chemistry modelling and mass spectrometry data simulation (data)
- massxpert2 (8.5.0-2) [universe]
- polymer chemistry modelling and mass spectrometry data simulation (runtime)
- massxpert2-data (8.5.0-2) [universe]
- polymer chemistry modelling and mass spectrometry data simulation (data)
- matlab-brain2mesh (0.7.9-3) [multiverse]
- automated brain tetrahedral mesh generation toolbox for MATLAB
- matlab-gdf (0.1.3-11.1build3) [multiverse]
- IO library for the GDF -- Matlab interface
- matlab-iso2mesh (1.9.8+ds-2) [multiverse]
- 3D surface and volumetric mesh generator for MATLAB
- matlab-jnifti (0.6-3) [multiverse]
- fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter for MATLAB
- matlab-jsonlab (2.9.8-1) [multiverse]
- native JSON/UBJSON/MassagePack encoder/decoder for MATLAB
- matlab-zmat (0.9.9+ds.1-4) [multiverse]
- in-memory data compression for MATLAB
- maude (3.4-1) [universe]
- high-performance logical framework
- mauve-aligner (2.4.0+4736-6) [universe]
- multiple genome alignment
- mayavi2 (4.8.3-1) [universe]
- scientific visualization package for 2-D and 3-D data
- mayo (0.9.0+ds-2) [universe]
- 3D CAD viewer and converter based on Qt + OpenCascade
- mbpoll (1.5.2-1) [universe]
- command line utility to communicate with ModBus slave (RTU or TCP)
- mbt (3.11-2build1) [universe]
- memory-based tagger-generator and tagger
- mbtserver (0.17-2build1) [universe]
- Server extensions for the MBT tagger
- mcaller (1.0.3+git20210624.b415090-3) [universe]
- find methylation in nanopore reads
- mcpl (1.3.2-3.1build1) [universe]
- Monte Carlo Particle Lists - libraries and tools
- mcstas (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation
- mcstas-clusterscripts (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - parallelization scripts
- mcstas-comps (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - components
- mcstas-manuals (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - documentation
- mcstas-mccodelib (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - Python code library
- mcstas-mcdisplay-mantid (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - Mantid instrument display
- mcstas-mcdisplay-matlab (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - Matlab/Octave instrument display
- mcstas-mcdisplay-matplotlib (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - Matplotlib instrument display
- mcstas-mcdisplay-pyqtgraph (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - pyqtgraph instrument display
- mcstas-mcdisplay-webgl (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - WebGL instrument display
- mcstas-mcdisplay-webgl-classic (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - WebGL instrument display
- mcstas-mcdoc (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - documentation browser
- mcstas-mcgui (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - GUI
- mcstas-mcplot-html (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - HTML plotting frontend
- mcstas-mcplot-matlab (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - Matlab/Octave plotting frontend
- mcstas-mcplot-matplotlib (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - Matplotlib plotting frontend
- mcstas-mcplot-pyqtgraph (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - pyqtgraph plotting frontend
- mcstas-mcresplot (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - resolution function plotter
- mcstas-mcrun (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - runner
- mcstas-suite-python (3.5+3.5.19+ds5-2) [universe]
- Neutron ray-trace simulation - full simulation suite
- mcxtrace (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation
- mcxtrace-clusterscripts (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - parallelization scripts
- mcxtrace-comps (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - components
- mcxtrace-manuals (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - documentation
- mcxtrace-mccodelib (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - Python code library
- mcxtrace-mxdisplay-matlab (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - Matlab/Octave instrument display
- mcxtrace-mxdisplay-matplotlib (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - Matplotlib instrument display
- mcxtrace-mxdisplay-pyqtgraph (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - pyqtgraph instrument display
- mcxtrace-mxdisplay-webgl (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - WebGL instrument display
- mcxtrace-mxdisplay-webgl-classic (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - WebGL instrument display
- mcxtrace-mxdoc (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - documentation browser
- mcxtrace-mxgui (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - GUI
- mcxtrace-mxplot-html (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - HTML plotting frontend
- mcxtrace-mxplot-matlab (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - Matlab/Octave plotting frontend
- mcxtrace-mxplot-matplotlib (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - Matplotlib plotting frontend
- mcxtrace-mxplot-pyqtgraph (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - pyqtgraph plotting frontend
- mcxtrace-mxrun (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - runner
- mcxtrace-suite-python (3.5+3.5.19+ds5-2) [universe]
- X-ray ray-trace simulation - full simulation suite
- mecat2 (0.0+git20200428.f54c542+ds-4) [universe]
- ultra-fast and accurate de novo assembly tools for SMRT reads
- meep (1.29.0-2) [universe]
- software package for FDTD simulation
- meep-mpi-default (1.29.0-2) [universe]
- software package for FDTD simulation, parallel version
- megadepth (1.2.0-4build2) [universe]
- computes coverage from BigWig and BAM sequencing files
- megahit (1.2.9-5) [universe]
- ultra-fast and memory-efficient meta-genome assembler
- megan-ce (6.21.1+dfsg-4) [universe]
- interactive tool to explore and analyse microbiome sequencing data
- melting (5.2.0-2) [universe]
- compute the melting temperature of nucleic acid duplex
- merkaartor (0.20.0+ds-2) [universe]
- map editor for OpenStreetMap.org
- meryl (0~20150903+r2013-9build1) [universe]
- in- and out-of-core kmer counting and utilities
- metabat (2.15-4) [universe]
- robust statistical framework for reconstructing genomes from metagenomic data
- metaeuk (7-bba0d80+ds-1) [universe]
- sensitive, high-throughput gene discovery and annotation for metagenomics
- metaeuk-examples (7-bba0d80+ds-1) [universe]
- optional resources for the metaeuk package
- metaphlan (4.0.4+ds-1) [universe]
- Metagenomic Phylogenetic Analysis
- metaphlan2-data (2.6.0+ds-4) [universe]
- data package for Metagenomic Phylogenetic Analysis
- metastudent (2.0.1-10) [universe]
- predictor of Gene Ontology terms from protein sequence
- metastudent-data (2.0.1-8) [universe]
- predictor of Gene Ontology terms from protein sequence - data files
- metastudent-data-2 (1.0.0-6) [universe]
- predictor of Gene Ontology terms from protein sequence - data #2
- metview (5.25.0-1) [universe]
- Interactive data visualization and analysis environment,
- metview-data (5.25.0-1) [universe]
- Data needed for the Metview data analysis environment
- mhap (2.1.3+dfsg-3) [universe]
- locality-sensitive hashing to detect long-read overlaps
- microbegps (1.0.0-7) [universe]
- explorative taxonomic profiling tool for metagenomic data
- microbiomeutil (20101212+dfsg1-6) [universe]
- Microbiome Analysis Utilities
- microbiomeutil-data (20101212+dfsg1-6) [universe]
- Reference 16S sequences and NAST-alignments used by microbiomeutil tools
- microhope (5.3.3+repack-2) [universe]
- hardware & software framework to learn microcontrollers
- minc-tools (2.3.00+dfsg-12) [universe]
- MNI medical image format tools
- mindthegap (2.3.0-4build1) [universe]
- performs detection and assembly of DNA insertion variants in NGS read datasets
- mindthegap-examples (2.3.0-4build1) [universe]
- optional scripts and example resources for mindthegap
- minexpert2 (9.6.0-1) [universe]
- MS^n mass spectrometric data visualization and mining (runtime)
- minia (3.2.6-4build3) [universe]
- short-read biological sequence assembler
- miniasm (0.3+dfsg-4) [universe]
- ultrafast de novo assembler for long noisy DNA sequencing reads
- minicondor (23.9.6+dfsg-2.1build2) [universe]
- distributed workload management system - single node configuration
- minihtcondor (23.9.6+dfsg-2.1build2) [universe]
- transitional dummy package
- minimac4 (4.1.6-1) [universe]
- Fast Imputation Based on State Space Reduction HMM
- minimap (0.2-8) [universe]
- tool for approximate mapping of long biosequences such as DNA reads
- minimap2 (2.27+dfsg-1build2) [universe]
- versatile pairwise aligner for genomic and spliced nucleotide sequences
- minisat (1:2.2.1-8build1) [universe]
- Fast and lightweight SAT solver
- minisat+ (1.0-5) [universe]
- solver for pseudo-Boolean constraints
- mipe (1.1-9) [universe]
- Tools to store PCR-derived data
- mira-assembler (4.9.6-11build2) [universe]
- Whole Genome Shotgun and EST Sequence Assembler
- mira-rfam-12s-rrna (4.9.6-11build2) [universe]
- extract of RFAM 12 rRNA database
- mirtop (0.4.30-1) [universe]
- annotate miRNAs with a standard mirna/isomir naming
- missfits (2.8.0-5) [universe]
- Basic maintenance and packaging tasks on FITS files
- mitools (2.0.5-7build1) [universe]
- view, convert and perform basic maths with medical image datasets
- mlpack-bin (4.6.0-1) [universe]
- intuitive, fast, scalable C++ machine learning library (binaries)
- mlv-smile (1.47-10) [universe]
- Find statistically significant patterns in sequences
- mmb (4.0.0+dfsg-5) [universe]
- model the structure and dynamics of macromolecules
- mmb-common (4.0.0+dfsg-5) [universe]
- model the structure and dynamics of macromolecules (common files)
- mmmulti (0.1-3) [universe]
- memory backed multimap
- mmseqs2 (15-6f452+ds-2) [universe]
- ultra fast and sensitive protein search and clustering
- mmseqs2-examples (15-6f452+ds-2) [universe]
- optional resources for the mmseqs2 package
- mocassin (2.02.73.2-1) [universe]
- MOnte CArlo SimulationS of Ionised Nebulae
- mocassin-benchmarks (2.02.73.2-1) [universe]
- benchmarks for the photoionisation code MOCASSIN
- mocassin-data (2.02.73.2-1) [universe]
- atomic and optical data for the photoionisation code MOCASSIN
- mocassin-examples (2.02.73.2-1) [universe]
- Examples for the photoionisation code MOCASSIN
- molds (0.3.1-2build3) [universe]
- Semi-empirical electronic structure and molecular dynamics
- molequeue (0.9.0-1build3) [universe]
- Desktop integration of high performance computing resources
- montage (6.1+dfsg-2) [universe]
- Toolkit for assembling FITS images into mosaics
- montage-gridtools (6.1+dfsg-2) [universe]
- Create files to run montage on the grid
- mopac (23.1.2-1) [universe]
- Molecular Orbital PACkage (MOPAC)
- mopac7-bin (1.15-7) [universe]
- Semi-empirical Quantum Chemistry Library (binaries)
- mosdepth (0.3.11+ds-2) [universe]
- BAM/CRAM depth calculation biological sequencing
- mosdepth-examples (0.3.11+ds-2) [universe]
- Test data for mosdepth
- mothur (1.48.1-1) [universe]
- sequence analysis suite for research on microbiota
- mpb (1.11.1-6build5) [universe]
- MIT Photonic-Bands
- mpb-mpi (1.11.1-6build5) [universe]
- MIT Photonic-Bands, parallel (mpich) version
- mpb-scm (1.11.1-6build5) [universe]
- MIT Photonic-Bands initialisation files
- mpgrafic (0.3.19-1build5) [universe]
- MPI version of N-body initial conditions grafic package
- mpsolve (3.2.1-11) [universe]
- Multiprecision polynomial solver (command line version)
- mptp (0.2.5-1) [universe]
- single-locus species delimitation
- mrbayes-mpi (3.2.7a-7build2) [universe]
- Bayesian Inference of Phylogeny - mpi version
- mricron (1.2.20211006+dfsg-6) [universe]
- magnetic resonance image conversion, viewing and analysis
- mricron-data (1.2.20211006+dfsg-6) [universe]
- data files for MRIcron
- mrtrix3 (3.0.4-1build2) [universe]
- diffusion-weighted MRI white matter tractography
- mseed2sac (2.3+ds1-1build1) [universe]
- Convert MiniSEED time series data to SAC
- mssstest (3.0-7build1) [multiverse]
- Normalisation of disease scores for patients with Multiple Sclerosis
- multiqc (1.21+dfsg-2) [universe]
- output integration for RNA sequencing across tools and samples
- mumax3 (3.10-9) [multiverse]
- GPU-accelerated micromagnetic simulator
- mummer (3.23+dfsg-8) [universe]
- Efficient sequence alignment of full genomes
- munipack (0.6.2-1) [universe]
- Astronomical photometry software package
- munipack-cli (0.6.2-1) [universe]
- Command line interface of Munipack
- munipack-core (0.6.2-1) [universe]
- Core routines of Munipack
- munipack-gui (0.6.2-1) [universe]
- Graphical user interface of Munipack
- murasaki (1.68.6-15) [universe]
- homology detection tool across multiple large genomes
- murasaki-common (1.68.6-15) [universe]
- homology detection tool across multiple large genomes (common files)
- murasaki-mpi (1.68.6-15) [universe]
- homology detection tool across multiple large genomes (MPI-version)
- muscle (1:5.1.0-1) [universe]
- Multiple alignment program of protein sequences
- muscle3 (3.8.1551-3) [universe]
- multiple alignment program of protein sequences
- music-bin (1.2.1-0.7) [universe]
- Multi-Simulation Coordinator for MPI -- Utilities
- mustang (3.2.4-1) [universe]
- multiple structural alignment of proteins
- mustang-testdata (3.2.4-1) [universe]
- multiple structural alignment of proteins, test data
- nanolyse (1.2.0-4) [universe]
- remove lambda phage reads from a fastq file
- nanopolish (0.14.0-2) [universe]
- consensus caller for nanopore sequencing data
- nanostat (1.4.0-4) [universe]
- statistics on long biological sequences
- nanosv (1.2.4+git20190409.c1ae30c-7) [universe]
- structural variant caller for nanopore data
- nast-ier (20101212+dfsg1-6) [universe]
- NAST-based DNA alignment tool
- nastran (0.1.95-2) [multiverse]
- NASA Structural Analysis System
- nautic (1.5-6build3) [universe]
- computation of observer position in astro-navigation
- ncbi-acc-download (0.2.8-3) [universe]
- download genome files from NCBI by accession
- ncbi-blast+ (2.16.0+ds-7) [universe]
- next generation suite of BLAST sequence search tools
- ncbi-blast+-legacy (2.16.0+ds-7) [universe]
- NCBI Blast legacy call script
- ncbi-cn3d (3.0.20170106+dfsg2-6) [universe]
- 3-dimensional viewer for biological molecules
- ncbi-entrez-direct (24.0.20250523+dfsg-1) [universe]
- NCBI Entrez utilities on the command line
- ncbi-epcr (2.3.12-1-10) [universe]
- Tool to test a DNA sequence for the presence of sequence tagged sites
- ncbi-rrna-data (6.1.20170106+dfsg2-6) [universe]
- large rRNA BLAST databases distributed with the NCBI toolkit
- ncbi-seg (0.0.20000620-8) [universe]
- tool to mask segments of low compositional complexity in amino acid sequences
- ncbi-tools-bin (6.1.20170106+dfsg2-6) [universe]
- NCBI libraries for biology applications (text-based utilities)
- ncbi-tools-x11 (6.1.20170106+dfsg2-6) [universe]
- NCBI libraries for biology applications (X-based utilities)
- ncl-ncarg (6.6.2.dfsg.1-10build2) [universe]
- NCAR Command Language and NCAR graphics
- ncl-tools (2.1.21+git20210811.b1213a7-6) [universe]
- tools to deal with NEXUS files
- ncoils (2002-10) [universe]
- coiled coil secondary structure prediction
- ncview (2.1.11+ds-1build1) [universe]
- X11 visual browser for NetCDF format files
- neat (2.3.2-2build3) [universe]
- Nebular Empirical Analysis Tool
- neobio (0.0.20030929-6) [universe]
- computes alignments of amino acid and nucleotide sequences
- netcdf-bin (1:4.9.3-1build1) [universe]
- Programs for reading and writing NetCDF files
- neurodebian (0.42.2) [universe]
- neuroscience-oriented distribution - repository configuration
- neurodebian-archive-keyring (0.42.2) [universe]
- neuroscience-oriented distribution - GnuPG archive keys
- neurodebian-desktop (0.42.2) [universe]
- neuroscience-oriented distribution - desktop integration
- neurodebian-dev (0.42.2) [universe]
- neuroscience-oriented distribution - development tools
- neurodebian-freeze (0.42.2) [universe]
- nd_freeze tool to freeze APT sources to use snapshots
- neurodebian-popularity-contest (0.42.2) [universe]
- neuroscience-oriented distribution - popcon integration
- neuron (8.2.6-1) [universe]
- Simulation environment for computational models of neurons
- neuron-dev (8.2.6-1) [universe]
- Neuron simulation environment - Development files
- nexus-tools (4.4.3-7build1) [universe]
- NeXus scientific data file format - applications
- ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2) [universe]
- CoNvex Gap-cost alignMents for Long Reads
- nim-kexpr-dev (0.0.2-3) [universe]
- kexpr math expressions for nim
- nim-lapper-dev (0.1.8-1) [universe]
- simple, fast interval searches for nim
- njplot (2.4-9build2) [universe]
- phylogenetic tree drawing program
- nmodl (0.6-2build4) [universe]
- Code generation engine for the NEURON modeling language
- norsnet (1.0.17-7) [universe]
- tool to identify unstructured loops in proteins
- norsp (1.0.6-7) [universe]
- predictor of non-regular secondary structure
- nrn-mod2c (8.2.2-1) [universe]
- NMODL to C converter for CoreNEURON
- ntcard (1.2.2+dfsg-9) [universe]
- Streaming algorithm to estimate cardinality in genomics datasets
- nthash (2.3.0+dfsg-4) [universe]
- Methods to evaluate runtime and uniformity tests for hashing methods
- numdiff (5.9.0-2) [universe]
- Compare similar files with numeric fields
- nutsqlite (2.0.6-4) [universe]
- Dietary nutrition analysis software
- nxtrim (0.4.3+dfsg-4) [universe]
- Optimized trimming of Illumina mate pair reads
- oar-common (2.6.1-1) [universe]
- OAR batch scheduler common package
- oar-node (2.6.1-1) [universe]
- OAR batch scheduler node package
- oar-restful-api (2.6.1-1) [universe]
- OAR web services
- oar-server (2.6.1-1) [universe]
- OAR batch scheduler server package
- oar-server-mysql (2.6.1-1) [universe]
- OAR batch scheduler MySQL server backend package
- oar-server-pgsql (2.6.1-1) [universe]
- OAR batch scheduler PostgreSQL server backend package
- oar-user (2.6.1-1) [universe]
- OAR batch scheduler user package
- oar-user-mysql (2.6.1-1) [universe]
- OAR batch scheduler MySQL user backend package
- oar-user-pgsql (2.6.1-1) [universe]
- OAR batch scheduler PostgreSQL user backend package
- oar-web-status (2.6.1-1) [universe]
- OAR batch scheduler visualization tool package
- objcryst-fox (2022.1-2) [universe]
- Free Objects for Xtallography
- occt-draw (7.8.1+dfsg1-3) [universe]
- Open CASCADE Technology command interpreter and graphical test system
- octave-bart (0.9.00-3) [universe]
- Octave bindings for BART
- octave-biosig (3.9.0-1) [universe]
- Octave bindings for BioSig library
- octave-brain2mesh (0.7.9-3) [multiverse]
- automated brain tetrahedral mesh generation toolbox for Octave
- octave-gdf (0.1.3-11.1build3) [universe]
- IO library for the GDF -- Octave interface
- octave-iso2mesh (1.9.8+ds-2) [multiverse]
- 3D surface and volumetric mesh generator for Octave
- octave-jnifti (0.6-3) [multiverse]
- fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter
- octave-jsonlab (2.9.8-1) [universe]
- native JSON/UBJSON/MassagePack encoder/decoder for Octave
- octave-psychtoolbox-3 (3.0.19.14.dfsg1-1build1) [universe]
- toolbox for vision research -- Octave bindings
- octave-zmat (0.9.9+ds.1-4) [universe]
- in-memory data compression for Octave
- octomap-tools (1.9.7+dfsg-4) [universe]
- Tools for 3D occupancy grid mapping
- octovis (1.9.7+dfsg-4) [universe]
- Visualization tool for OctoMap
- odil (0.13.0-1) [universe]
- C++11 library for the DICOM standard (application)
- odin (2.0.5-7build1) [universe]
- develop, simulate and run magnetic resonance sequences
- ogdi-bin (4.1.1+ds-5) [universe]
- Open Geographic Datastore Interface Library -- utilities
- ompl-demos (1.6.0+ds1-5build2) [universe]
- Open Motion Planning Library (OMPL) demos
- ompl-plannerarena (1.6.0+ds1-5build2) [universe]
- Open Motion Planning Library (OMPL) plannerarena
- onnxruntime-tools (1.21.0+dfsg-2) [universe]
- cross-platform inference and training ML accelerator (tools)
- ont-fast5-api (4.1.3+dfsg-1build1) [universe]
- simple interface to HDF5 files of the Oxford Nanopore .fast5 file format
- open3d-gui (0.19.0-5) [universe]
- Transitional dummy package for open3d-viewer
- open3d-tools (0.19.0-5) [universe]
- Library for 3D data processing - tools
- open3d-viewer (0.19.0-5) [universe]
- Library for 3D data processing - viewer GUI
- open3d-viewer-data (0.19.0-5) [universe]
- Library for 3D data processing - viewer GUI resources
- openbabel (3.1.1+dfsg-11ubuntu4) [universe]
- Chemical toolbox utilities (cli)
- openbabel-gui (3.1.1+dfsg-11ubuntu4) [universe]
- Chemical toolbox utilities (graphical user interface)
- opendrop (3.3.2-2build3) [universe]
- fully-featured pendant drop tensiometry software
- openfoam (1912.200626-3build1) [universe]
- Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
- openfoam-examples (1912.200626-3build1) [universe]
- Open source toolbox for Computational Fluid Dynamics (CFD) - examples
- openmolcas (25.02-2) [universe]
- Quantum chemistry software package
- openmolcas-data (25.02-2) [universe]
- Quantum chemistry software package (data files)
- openmotor (0.6.0-3) [universe]
- internal ballistics simulator for rocket motor experimenters
- openms (2.6.0+cleaned1-4build7) [universe]
- package for LC/MS data management and analysis
- openms-common (2.6.0+cleaned1-4build7) [universe]
- package for LC/MS data management and analysis - shared data
- openstructure (2.9.3-2build1) [universe]
- Open-Source Computational Structural Biology Framework
- opentelemetry-proto (1.5.0-1) [universe]
- OpenTelemetry protocol specification and proto files
- openturns-common (1.24-4build2) [universe]
- generic tool to treat and quantify uncertainties (common files)
- openuniverse (1.0beta3.1+dfsg-7.2) [universe]
- 3D Universe Simulator
- openuniverse-common (1.0beta3.1+dfsg-7.2) [universe]
- 3D Universe Simulator data files
- optgeo (2.25-4) [universe]
- simulator for geometrical optics
- opticalraytracer (9.6-4) [universe]
- Virtual lens/mirror design workshop
- optimir (1.2-2) [universe]
- Integrating genetic variations in miRNA alignment
- orthanc (1.12.7+dfsg-4build2) [universe]
- Lightweight, RESTful DICOM server for medical imaging
- orthanc-dicomweb (1.20+dfsg-1build1) [universe]
- Plugin to extend Orthanc with support of WADO and DICOMweb
- orthanc-gdcm (1.8+dfsg-1build4) [universe]
- DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k)
- orthanc-imagej (1.2+dfsg-4) [universe]
- ImageJ plugin to import images from Orthanc
- orthanc-mysql (5.0+dfsg-2) [universe]
- Plugins to use MySQL or MariaDB as a database back-end to Orthanc
- orthanc-neuro (1.1+dfsg-2) [universe]
- Neuroimaging plugin for Orthanc
- orthanc-postgresql (5.0+dfsg-4) [universe]
- Plugins to use PostgreSQL as a database back-end to Orthanc
- orthanc-python (5.0+ds-3build1) [universe]
- Develop plugins for Orthanc using the Python programming language
- orthanc-webviewer (2.10+dfsg-2) [universe]
- Web viewer of medical images for Orthanc
- orthanc-wsi (3.2+dfsg-7build1) [universe]
- Whole-slide imaging support for Orthanc (digital pathology)
- oscar (1.5.3-2) [universe]
- Open Source CPAP Analysis Reporter (OSCAR)
- osra (2.1.3-3build5) [universe]
- optical structure recognition
- otf-trace (1.12.5+dfsg-8build5) [universe]
- Open Trace Format support library - development files
- otf2-tools (3.0.3-3.1build1) [universe]
- Open Trace Format support library - tools
- packmol (1:21.0.2-2) [universe]
- Initial configurations for Molecular Dynamics Simulations
- paje.app (1.98-2build1) [universe]
- generic visualization tool (Gantt chart and more)
- pal2nal (14.1-3) [universe]
- converts proteins to genomic DNA alignment
- paleomix (1.3.8-2) [universe]
- pipelines and tools for the processing of ancient and modern HTS data
- paml (4.9j+dfsg-6) [universe]
- Phylogenetic Analysis by Maximum Likelihood (PAML)
- paraclu (10-1) [universe]
- Parametric clustering of genomic and transcriptomic features
- parafly (0.1.0-5) [universe]
- parallel command processing using OpenMP
- parallel-fastq-dump (0.6.7-3) [universe]
- parallel fastq-dump wrapper
- paraview (5.13.2+dfsg-3) [universe]
- Parallel Visualization Application
- parsinsert (1.04-15ubuntu1) [universe]
- Parsimonious Insertion of unclassified sequences into phylogenetic trees
- parsinsert-testdata (1.04-15ubuntu1) [universe]
- Test data for parsinsert
- parsnp (2.1.3+dfsg-1) [universe]
- rapid core genome multi-alignment
- patman (1.2.2+dfsg-8) [universe]
- rapid alignment of short sequences to large databases
- pbbamtools (2.4.0+dfsg-1build2) [universe]
- processing Pacific Biosciences binary alignment/map files
- pbdagcon (0.3+git20180411.c14c422+dfsg-9) [universe]
- sequence consensus using directed acyclic graphs
- pbhoney (15.8.24+dfsg-8) [universe]
- genomic structural variation discovery
- pbjelly (15.8.24+dfsg-8) [universe]
- genome assembly upgrading tool
- pbsim (1.0.3+git20180330.e014b1d+dfsg-3) [universe]
- simulator for PacBio sequencing reads
- pdb-tools (2.5.1-2) [universe]
- tools for manipulating and editing PDB files
- pdb2pqr (3.6.1+dfsg-1) [universe]
- Preparation of protein structures for electrostatics calculations
- perlprimer (1.2.4-2) [universe]
- Graphical design of primers for PCR
- perlprimer-doc (1.2.4-2) [universe]
- Tutorial to perlprimer
- perm (0.4.0-8) [universe]
- efficient mapping of short reads with periodic spaced seeds
- persalys (17.0.1+ds-2build3) [universe]
- GUI for uncertainty treatment and variabilities management
- pftools (3.2.12-1) [universe]
- build and search protein and DNA generalized profiles
- phast (1.7+dfsg-3) [universe]
- phylogenetic analysis with space/time models
- phipack (0.0.20160614-5) [universe]
- PHI test and other tests of recombination
- phybin (0.3-6) [universe]
- binning/clustering newick trees by topology
- phylip (1:3.697+dfsg-4build1) [universe]
- package of programs for inferring phylogenies
- phylip-doc (1:3.697+dfsg-4build1) [universe]
- package of programs for inferring phylogenies (documentation)
- phylonium (1.7-3) [universe]
- Fast and Accurate Estimation of Evolutionary Distances
- phyml (3:3.3.20220408-4build1) [universe]
- Phylogenetic estimation using Maximum Likelihood
- physamp (1.1.0-5) [universe]
- sample sequence alignment corresponding to phylogeny
- phyutility (2.7.3+dfsg-4) [universe]
- simple analyses or modifications on both phylogenetic trees and data matrices
- phyx (1.3.2+ds-1) [universe]
- UNIX-style phylogenetic analyses on trees and sequences
- picard-tools (3.3.0+dfsg-2) [universe]
- Command line tools to manipulate SAM and BAM files
- picopore (1.2.0-3) [universe]
- lossless compression of Nanopore files
- picosat (965-2) [universe]
- SAT solver with proof and core support
- pigx-rnaseq (0.1.1-1) [universe]
- pipeline for checkpointed and distributed RNA-seq analyses
- piler (0~20140707-4) [universe]
- genomic repeat analysis
- pilercr (1.06+dfsg-5) [universe]
- software for finding CRISPR repeats
- pilon (1.24-4) [universe]
- automated genome assembly improvement and variant detection tool
- pinfish (0.1.0+ds-4) [universe]
- Collection of tools to annotate genomes using long read transcriptomics data
- pinfish-examples (0.1.0+ds-4) [universe]
- Examples and test data for pinfish
- pique (1.1-1) [universe]
- software pipeline for performing genome wide association studies
- pirs (2.0.2+dfsg-12) [universe]
- Profile based Illumina pair-end Reads Simulator
- pirs-examples (2.0.2+dfsg-12) [universe]
- profile basd Illumina pair-end Reads Simulator (example data)
- pirs-profiles (2.0.2+dfsg-12) [universe]
- profile basd Illumina pair-end Reads Simulator (profile data)
- pizzly (0.37.3+ds-9) [universe]
- Identifies gene fusions in RNA sequencing data
- pkg-r-autopkgtest (20231212ubuntu1) [universe]
- Script for the automatic testing of R packages
- pktools (2.6.7.6+ds-6build4) [universe]
- GDAL add-on tools to perform useful raster processing
- placnet (1.04-1) [universe]
- Plasmid Constellation Network project
- planetary-system-stacker (0.8.32~git20230901.01f3625-2) [universe]
- create a sharp image of a planetary system object (moon, sun, planets)
- planets (0.1.13-23build3) [universe]
- Gravitation simulation of planetary bodies
- plasmidid (1.6.5+dfsg-2) [universe]
- mapping-based, assembly-assisted plasmid identification tool
- plasmidseeker (1.3+dfsg-3) [universe]
- identification of known plasmids from whole-genome sequencing reads
- plast (2.3.2+dfsg-11) [universe]
- Parallel Local Sequence Alignment Search Tool
- plast-example (2.3.2+dfsg-11) [universe]
- Parallel Local Sequence Alignment Search Tool (example data)
- plastimatch (1.10.0+dfsg.1-1build1) [universe]
- medical image reconstruction and registration
- plink (1.07+dfsg-4) [universe]
- whole-genome association analysis toolset
- plink1.9 (1.90~b7.7-241022-2) [universe]
- whole-genome association analysis toolset
- plink2 (2.00~a6.9-250129+dfsg-1build2) [universe]
- whole-genome association analysis toolset
- pluto-jpl-eph (0.0~git20180228-1.1build1) [universe]
- command line handling of JPL ephemeres data
- pluto-lunar (0.0~git20180825.e34c1d1-1build1) [universe]
- routines for predictions of positions in solar system
- pnetcdf-bin (1.14.0-2) [universe]
- Programs for reading and writing parallel NetCDF files
- poa (2.0+20060928-10) [universe]
- Partial Order Alignment for multiple sequence alignment
- populations (1.2.33+svn0120106+dfsg-7) [universe]
- population genetic software
- porechop (0.2.4+dfsg-6) [universe]
- adapter trimmer for Oxford Nanopore reads
- poretools (0.6.0+dfsg-7) [universe]
- toolkit for nanopore nucleotide sequencing data
- poretools-data (0.6.0+dfsg-7) [universe]
- toolkit for nanopore nucleotide sequencing data -- sample datasets
- pplacer (1.1~alpha19-8build1) [universe]
- phylogenetic placement and downstream analysis
- praat (6.4.27+dfsg-2) [universe]
- program for speech analysis and synthesis
- prank (0.0.170427+dfsg-3) [universe]
- Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
- predictnls (1.0.20-8) [universe]
- prediction and analysis of protein nuclear localization signals
- prime-phylo (1.0.11-14) [universe]
- bayesian estimation of gene trees taking the species tree into account
- primer3 (2.6.1-6) [universe]
- tool to design flanking oligo nucleotides for DNA amplification
- primer3-examples (2.6.1-6) [universe]
- tool to design flanking oligo nucleotides for DNA amplification (examples)
- prinseq-lite (0.20.4-6) [universe]
- PReprocessing and INformation of SEQuence data (lite version)
- prinseq-lite-examples (0.20.4-6) [universe]
- PReprocessing and INformation of SEQuence data (example data)
- proalign (0.603-6) [universe]
- Probabilistic multiple alignment program
- probabel (0.5.0+dfsg-6) [universe]
- Toolset for Genome-Wide Association Analysis
- probabel-examples (0.5.0+dfsg-6) [universe]
- Example files for ProbABEL
- probalign (1.4-10) [universe]
- multiple sequence alignment using partition function posterior probabilities
- probcons (1.12-14) [universe]
- PROBabilistic CONSistency-based multiple sequence alignment
- (1.12-14) [universe]
- Extra programs from the probcons package
- proda (1.0-14) [universe]
- multiple alignment of protein sequences
- prodigal (1:2.6.3-6) [universe]
- Microbial (bacterial and archaeal) gene finding program
- profbval (1.0.22-8) [universe]
- predictor of flexible/rigid protein residues from sequence
- profisis (1.0.11-7) [universe]
- prediction of protein-protein interaction sites from sequence
- profnet-bval (1.0.22-8) [universe]
- neural network architecture for profbval
- profnet-chop (1.0.22-8) [universe]
- neural network architecture for profchop
- profnet-con (1.0.22-8) [universe]
- neural network architecture for profcon
- profnet-isis (1.0.22-8) [universe]
- neural network architecture for profisis
- profnet-md (1.0.22-8) [universe]
- neural network architecture for metadisorder
- profnet-norsnet (1.0.22-8) [universe]
- neural network architecture for norsnet
- profnet-prof (1.0.22-8) [universe]
- neural network architecture for profacc
- profnet-snapfun (1.0.22-8) [universe]
- neural network architecture for snapfun
- profphd-net (1.0.22-8) [universe]
- neural network architecture for profphd
- profphd-utils (1.0.10-7) [universe]
- profphd helper utilities convert_seq and filter_hssp
- proftmb (1.1.12-11build1) [universe]
- per-residue prediction of bacterial transmembrane beta barrels
- progressivemauve (1.2.0+4713+dfsg-5build3) [universe]
- multiple genome alignment algorithms
- proj-bin (9.6.0-1) [universe]
- Cartographic projection library (tools)
- prokka (1.14.6+dfsg-6) [universe]
- rapid annotation of prokaryotic genomes
- promod3 (3.4.2+ds-1) [universe]
- protein homology modelling engine
- promod3-data (3.4.2+ds-1) [universe]
- protein homology modelling engine - data files
- proteinortho (6.3.1+dfsg-1) [universe]
- Detection of (Co-)orthologs in large-scale protein analysis
- prottest (3.4.2+dfsg-8) [universe]
- selection of best-fit models of protein evolution
- provean (1.1.5+ds-5) [universe]
- Protein Variation Effect Analyzer
- pscan-chip (1.1-3build2) [universe]
- ChIP-based identifcation of TF binding sites
- pscan-chip-data (1.1-3build2) [universe]
- auxiliary data for PScan-ChIP
- pscan-tfbs (1.2.2-4build2) [universe]
- search for transcription factor binding sites
- psfex (3.24.2-2) [universe]
- Point Spread Function model extractor
- psi4 (1:1.3.2+dfsg-6) [universe]
- Quantum Chemical Program Suite
- psi4-data (1:1.3.2+dfsg-6) [universe]
- Quantum Chemical Program Suite (data files)
- psychtoolbox-3-common (3.0.19.14.dfsg1-1build1) [universe]
- toolbox for vision research -- arch/interpreter independent part
- psychtoolbox-3-lib (3.0.19.14.dfsg1-1build1) [universe]
- toolbox for vision research -- arch-specific parts
- pullseq (1.0.2-5) [universe]
- Extract sequence from a fasta or fastq
- purify (4.2.0-1build1) [universe]
- Collection of routines for radio interferometric imaging
- pycoqc (2.5.2+dfsg-4) [universe]
- computes metrics and generates Interactive QC plots
- pyensembl (2.3.13-2) [universe]
- installs data from the Ensembl genome database
- pyfai (2025.03-1) [universe]
- Fast Azimuthal Integration scripts
- pyfastx (2.2.0-1build1) [universe]
- fast random access to sequences from FASTA/Q file - command
- pymca (5.9.4-1) [universe]
- Applications and toolkit for X-ray fluorescence analysis -- scripts
- pymca-data (5.9.4-1) [universe]
- Architecture independent data files for PyMca
- pymoctool (0.5.2-2) [universe]
- Python Multi-Order Coverage maps tool for Virtual Observatory
- pymol (3.1.0+dfsg-1build1) [universe]
- Molecular Graphics System
- pymol-data (3.1.0+dfsg-1build1) [universe]
- data files for PyMOL
- pynx (2025.1-2) [universe]
- Python tools for Nano-structures Crystallography (Scripts)
- pyomop (4.3.0-1) [universe]
- OHSDI OMOP Common Data Model tools
- python-drizzle-testdata (2.0.1-1build1) [universe]
- Dithered image combination for Python (Test data)
- python-pairix-examples (0.3.8-1build2) [universe]
- 1D/2D indexing and querying with a pair of genomic coordinates (examples)
- python3-acres (0.5.0-2) [universe]
- data-loading utility for Python
- python3-adios4dolfinx (0.9.3-1) [universe]
- ADIOS2Wrappers for DOLFINx (Python 3)
- python3-airr (1.5.1-1) [universe]
- Data Representation Standard library for antibody and TCR sequences
- python3-alignlib (0.1.1+dfsg-2build7) [universe]
- edit and Hamming distances for biological sequences
- python3-bioframe (0.4.1-2) [universe]
- library to enable flexible, scalable operations on genomic interval dataframes
- python3-bornagain (22~git20250325170646.93042f5+ds3-3) [universe]
- Simulate and fit X-ray and neutron GISAS -- Python3
- python3-cif2cell (2.1.0+dfsg-1) [universe]
- prepare CIF files for electronic structure calculations
- python3-cykhash (2.0.0-3build3) [universe]
- cython wrapper for khash-sets/maps, efficient implementation of isin and unique
- python3-datalad-next (1.5.0-1) [universe]
- DataLad extension for new features and improved user experience
- python3-dcmstack (0.9-3) [universe]
- DICOM to NIfTI conversion - python3 package
- python3-einops (0.8.1-1) [universe]
- Flexible and powerful tensor operations for readable code
- python3-emperor (1.0.4+ds-1) [universe]
- visualizing high-throughput microbial community data
- python3-eumdac (3.0.0-1.1) [universe]
- EUMETSAT Data Access Client (Python 3 library and CLI)
- python3-ffcv (1.0.0+git20240202+ds-2.1) [universe]
- Fast Forward Computer Vision (and other ML workloads)
- python3-freesas (2024.9.0-3) [universe]
- Python libraries for small angle scattering tools
- python3-gfapy (1.2.3+dfsg-3) [universe]
- flexible and extensible software library for handling sequence graphs
- python3-gffutils (0.13-2) [universe]
- Work with GFF and GTF files in a flexible database framework
- python3-gtfparse (1.3.0+ds-2) [universe]
- parser for gene transfer format (aka GFF2)
- python3-harmonypy (0.0.9-3.1) [universe]
- is a data integration algorithm
- python3-jupyter-sphinx (0.3.2-2) [universe]
- Jupyter Sphinx Extension - Python3
- python3-louvain (0.16-1) [universe]
- community graph analysis implementing Louvain method
- python3-mmtf (1.1.3-1) [universe]
- binary encoding of biological structures (Python 3)
- python3-mpiplus (0.0.2+ds-1) [universe]
- Python GPU framework for alchemical free energy calculations (Python 3)
- python3-navarp (1.6.0-4) [universe]
- Navigation tool for ARPES data (Python 3)
- python3-noise (1.2.3-4build6) [universe]
- Perlin noise for image generation
- python3-onnx (1.17.0-3build1) [universe]
- Open Neural Network Exchange (ONNX) (Python)
- python3-pdbtools (2.5.1-2) [universe]
- tools for manipulating and editing PDB files (Python 3 package)
- python3-peptidebuilder (1.1.0-3) [universe]
- generate atomic oligopeptide 3D structure from sequence
- python3-prodigy (2.2.5-1) [universe]
- Protein Binding Affinity Prediction (Python 3)
- python3-py2bit (0.3.3-1build1) [universe]
- access to 2bit files
- python3-pyaml-env (1.2.1-2) [universe]
- Python3 YAML configuration with environment variables parsing
- python3-pybel (0.15.5-1) [universe]
- Biological Expression Language
- python3-pybigwig (0.3.23+dfsg-1build3) [universe]
- Python 3 module for quick access to bigBed and bigWig files
- python3-pyimagetool (1.0-2) [universe]
- Image Tool for multidimensional analysis (Python 3)
- python3-pymbar (4.0.3-2) [universe]
- Python implementation of the multistate Bennett acceptance ratio (MBAR)
- python3-pynlpl (1.2.9-2) [universe]
- PyNLPl is a library for Natural Language Processing (Python 3 version)
- python3-pyobjcryst (2024.2.1-1build4) [universe]
- Object-Oriented Crystallographic Library bindings (Python 3)
- python3-pyvista (0.44.1-11) [universe]
- Python3 high-level API to the Visualization Toolkit (VTK)
- python3-pyvkfft (2024.1.4+ds1-3.1build2) [universe]
- Binding to the OpenCL backends of VkFFT - Python3
- python3-pyvkfft-cuda (2024.1.4+ds1-7ubuntu1) [multiverse]
- Binding to the CUDA backends of VkFFT - Python3
- python3-pyxrd (0.8.4-5) [universe]
- modeling of X-ray diffraction (XRD) patterns of disordered lamellar structures
- python3-seqcluster (1.2.9+ds-5) [multiverse]
- analysis of small RNA in NGS data
- python3-skorch (1.1.0-1) [universe]
- scikit-learn compatible neural network library that wraps PyTorch
- python3-tinyalign (0.2.2-1build4) [universe]
- numerical representation of differences between strings
- python3-torch-cluster (1.6.3-2) [universe]
- PyTorch extension library of optimized graph cluster algorithms (Python 3)
- python3-torch-geometric (2.6.1-6) [universe]
- Graph Neural Network Library for PyTorch
- python3-torch-ignite (0.5.1-1) [universe]
- High-level library to help with training and evaluating in PyTorch
- python3-torch-scatter (2.1.2-4) [universe]
- PyTorch Extension Library of Optimized Scatter Operations
- python3-torch-sparse (0.6.18-3) [universe]
- PyTorch Extension Library of Optimized Autograd Sparse Matrix Operations
- python3-torchaudio (2.6.0-1) [universe]
- Data manipulation and transformation for audio signal processing
- python3-torchvision (0.21.0-3) [universe]
- Datasets, Transforms and Models specific to Computer Vision
- python3-truncnorm (0.0.2-3) [universe]
- Moments for truncated multivariate normal distributions for Python
- python3-weblogo (3.8.0-2) [universe]
- sequence logo generator
- python3-xeus-python-shell (0.17.2+~0.6.3-0.1build1) [universe]
- Native jupyter kernel for python (python library)
- python3-xraydb (4.5.3-2) [universe]
- X-ray Reference Data (Python 3)
- python3-xraylarch (0.9.81+ds1-2build1) [universe]
- X-ray absorption, fluorescence spectroscopy and diffraction data analysis
- python3-xrt (1.6.0+ds1-1) [universe]
- XRay Tracer and wave propagation (Python 3)
- pyzo (4.15.0-3) [universe]
- interactive editor for scientific Python
- q2-alignment (2024.5.0-1ubuntu2) [universe]
- QIIME 2 plugin for generating and manipulating alignments
- q2-cutadapt (2024.5.0-1build1) [universe]
- QIIME 2 plugin to work with adapters in sequence data
- q2-dada2 (2024.5.0-1ubuntu2) [universe]
- QIIME 2 plugin to work with adapters in sequence data
- q2-demux (2024.5.0+dfsg-1ubuntu2) [universe]
- QIIME 2 plugin for demultiplexing of sequence reads
- q2-diversity-lib (2024.5.0-1ubuntu2) [universe]
- QIIME2 plugin to expose diversity metrics/measures as actions
- q2-emperor (2024.5.0-2) [universe]
- QIIME2 plugin for display of ordination plots
- q2-feature-classifier (2024.2.0-1ubuntu2) [universe]
- QIIME 2 plugin supporting taxonomic classification
- q2-feature-table (2024.5.0+dfsg-1ubuntu2) [universe]
- QIIME 2 plugin supporting operations on feature tables
- q2-fragment-insertion (2024.5.0-1ubuntu2) [universe]
- QIIME 2 plugin for fragment insertion
- q2-metadata (2024.5.0+dfsg-1build1) [universe]
- QIIME 2 plugin for working with and visualizing Metadata
- q2-phylogeny (2024.2.0-1ubuntu1) [universe]
- QIIME 2 plugin for phylogeny
- q2-quality-control (2024.5.0-1ubuntu2) [universe]
- QIIME 2 plugin for quality assurance of feature and sequence data
- q2-quality-filter (2024.5.0-1ubuntu2) [universe]
- QIIME2 plugin for PHRED-based filtering and trimming
- q2-sample-classifier (2024.5.0-2) [universe]
- QIIME 2 plugin for machine learning prediction of sample data
- q2-taxa (2024.5.0+dfsg-1build1) [universe]
- QIIME 2 plugin for working with feature taxonomy annotations
- q2-types (2024.5.0-1ubuntu2) [universe]
- QIIME 2 plugin defining types for microbiome analysis
- q2cli (2024.5.0-2ubuntu2) [universe]
- Click-based command line interface for QIIME 2
- q2templates (2024.5.0+ds-3) [universe]
- Design template package for QIIME 2 Plugins
- qcat (1.1.0-7) [universe]
- demultiplexing Oxford Nanopore reads from FASTQ files
- qcat-examples (1.1.0-7) [universe]
- demultiplexing Oxford Nanopore reads from FASTQ files (examples)
- qcumber (2.3.0-2) [universe]
- quality control of genomic sequences
- qemu-web-desktop (25.04.05+ds1-1) [universe]
- Remote desktop service with virtual machines in a browser (DARTS).
- qfits-tools (6.2.0-9ubuntu1) [universe]
- FITS manipulation tools
- qfitsview (4.3+dfsg-1) [universe]
- FITS file viewer based on DPUSER
- qgis (3.40.8+dfsg-1~exp1) [universe]
- Geographic Information System (GIS)
- qgis-api-doc (3.40.8+dfsg-1~exp1) [universe]
- QGIS API documentation
- qgis-common (3.40.8+dfsg-1~exp1) [universe]
- QGIS - architecture-independent data
- qgis-plugin-grass (3.40.8+dfsg-1~exp1) [universe]
- GRASS plugin for QGIS
- qgis-plugin-grass-common (3.40.8+dfsg-1~exp1) [universe]
- GRASS plugin for QGIS - architecture-independent data
- qgis-provider-grass (3.40.8+dfsg-1~exp1) [universe]
- GRASS provider for QGIS
- qgis-providers (3.40.8+dfsg-1~exp1) [universe]
- collection of data providers to QGIS
- qgis-providers-common (3.40.8+dfsg-1~exp1) [universe]
- collection of data providers to QGIS - architecture-independent files
- qgis-server (3.40.8+dfsg-1~exp1) [universe]
- QGIS server providing various OGC services
- qgis-server-bin (3.40.8+dfsg-1~exp1) [universe]
- QGIS server providing various OGC services (executables)
- qgis-server-common (3.40.8+dfsg-1~exp1) [universe]
- QGIS server providing various OGC services (data)
- qgis-server-landingpage (3.40.8+dfsg-1~exp1) [universe]
- QGIS server providing various OGC services (landing page)
- qgis-server-wcs (3.40.8+dfsg-1~exp1) [universe]
- QGIS server providing various OGC services (WCS)
- qgis-server-wfs (3.40.8+dfsg-1~exp1) [universe]
- QGIS server providing various OGC services (WFS)
- qgis-server-wfs3 (3.40.8+dfsg-1~exp1) [universe]
- QGIS server providing various OGC services (WFS 3)
- qgis-server-wms (3.40.8+dfsg-1~exp1) [universe]
- QGIS server providing various OGC services (WMS)
- qgis-server-wmts (3.40.8+dfsg-1~exp1) [universe]
- QGIS server providing various OGC services (WMTS)
- qgis3-survex-import (1.3-1) [universe]
- QGIS3 plugin to read survex 3d files, for cave surveying
- qiime (2024.5.0-1ubuntu2) [universe]
- Quantitative Insights Into Microbial Ecology
- qmapshack (1.17.1-1build5) [universe]
- GPS mapping (GeoTiff and vector) and GPSr management
- qmc (0.94-4.1) [universe]
- Quine McClusky Simplification Tool
- qrisk2 (0.1.20150729-7) [universe]
- cardiovascular disease risk calculator
- qthid-fcd-controller (4.1-6build2) [universe]
- Funcube Dongle controller
- qtltools (1.3.1+dfsg-4build6) [universe]
- Tool set for molecular QTL discovery and analysis
- qttinysa (1.0.2+git20250424T094920-a2d39d0-1) [universe]
- QT Gui for a tiny SA Spectrum Analyser
- quantum-espresso (6.7-4) [universe]
- Electronic-Structure and Ab-Initio Molecular Dynamics Suite
- quantum-espresso-data (6.7-4) [universe]
- Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
- quantum-espresso-data
- virtual package provided by quantum-espresso-data-sssp
- quantum-espresso-data-sssp (1.3.0-3) [universe]
- Standard solid-state pseudopotentials (SSSP) library
- quicktree (2.5-6) [universe]
- Neighbor-Joining algorithm for phylogenies
- quorum (1.1.2-2) [universe]
- QUality Optimized Reads of genomic sequences
- qutemol (0.4.1~cvs20081111-15build2) [universe]
- interactive visualization of macromolecules
- r-cran-colorspace (2.1-1+dfsg-1) [universe]
- GNU R Color Space Manipulation
- r-cran-epibasix (1.5-2build1) [universe]
- GNU R Elementary Epidemiological Functions
- r-cran-genetics (1.3.8.1.3-1) [universe]
- GNU R package for population genetics
- r-cran-haplo.stats (1.9.7-1) [universe]
- GNU R package for haplotype analysis
- r-cran-msm (1.8.2-1) [universe]
- GNU R Multi-state Markov and hidden Markov models in continuous time
- r-cran-randomforest (4.7-1.2-1) [universe]
- GNU R package implementing the random forest classificator
- r-cran-sdmtools (1.1-221.2-2) [universe]
- Species Distribution Modelling Tools
- r-cran-sp (1:2.2-0+dfsg-1) [universe]
- GNU R classes and methods for spatial data
- r-cran-spc (1:0.7.1-1) [universe]
- GNU R Statistical Process Control
- r-cran-surveillance (1.24.1-1) [multiverse]
- GNU R package for the Modeling and Monitoring of Epidemic Phenomena
- r-cran-vcd (1:1.4-13-1) [universe]
- GNU R Visualizing Categorical Data
- r-cran-xtable (1:1.8-4-2) [universe]
- GNU R coerce data to LaTeX and HTML tables
- racon (1.5.0-3) [universe]
- consensus module for raw de novo DNA assembly of long uncorrected reads
- radiant (2.8.1+dfsg-2) [universe]
- explore hierarchical metagenomic data with zoomable pie charts
- ragout (2.3-5) [universe]
- Reference-Assisted Genome Ordering UTility
- ragout-examples (2.3-5) [universe]
- Reference-Assisted Genome Ordering UTility (example data)
- rambo-k (1.21+dfsg-5) [universe]
- Read Assignment Method Based On K-mers
- rampler (2.1.1-1) [universe]
- module for sampling genomic sequences
- rapmap (0.15.0+dfsg-4) [universe]
- rapid sensitive and accurate DNA read mapping via quasi-mapping
- rapmap-dev (0.15.0+dfsg-4) [universe]
- rapmap - rapid sensitive and accurate DNA read mapping (some headers)
- rapmap-example-data (0.15.0+dfsg-4) [universe]
- example data for rapmap - rapid sensitive and accurate DNA read mapping
- rasmol (2.7.6.0-4) [universe]
- visualization of biological macromolecules
- rasmol-doc (2.7.6.0-4) [universe]
- documentation for rasmol
- raster3d (3.0-8-1) [multiverse]
- tools for generating images of proteins or other molecules
- rate4site (3.0.0-8) [universe]
- detector of conserved amino-acid sites
- rawtran (1.1-1build5) [universe]
- RAW photo to FITS converter
- raxml (8.2.13+dfsg-2) [universe]
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
- ray (2.3.1-9) [universe]
- de novo genome assemblies of next-gen sequencing data
- (2.3.1-9) [universe]
- Scripts and XSL sheets for post-processing for ray
- rdf2rml (0~20250122~dfsg-2) [universe]
- convert RDF data to either R2RML script or PlantUML diagram
- rdkit-data (202503.1-4) [universe]
- Collection of cheminformatics and machine-learning software (data files)
- rdp-classifier (2.10.2-7) [universe]
- extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
- readseq (1-16) [universe]
- Conversion between sequence formats
- readucks (0.0.3-6) [universe]
- Nanopore read de-multiplexer (read demux -> readux -> readucks, innit)
- reapr (1.0.18+dfsg-7) [universe]
- universal tool for genome assembly evaluation
- recan (0.5+dfsg-1) [universe]
- genetic distance plotting for recombination events analysis
- refmac-dictionary (5.41-3) [universe]
- dictionary for macromolecular refinement and model building
- relion (3.1.3-4build1) [universe]
- toolkit for 3D reconstructions in cryo-electron microscopy
- relion-gui (3.1.3-4build1) [universe]
- toolkit for 3D reconstructions in cryo-electron microscopy (gui apps)
- repeatmasker-recon (1.08-8) [universe]
- finds repeat families from biological sequences
- reprof (1.0.1-9) [universe]
- protein secondary structure and accessibility predictor
- resfinder (4.4.2-2) [universe]
- identify acquired antimicrobial resistance genes
- resfinder-db (0.0+git20220524.fa32d9a-1) [universe]
- ResFinder database is a curated database of acquired resistance genes
- resfinder-example (4.4.2-2) [universe]
- identify acquired antimicrobial resistance genes (example data)
- rna-star (2.7.11b+dfsg-2) [universe]
- ultrafast universal RNA-seq aligner
- rnahybrid (2.1.2-8) [universe]
- Fast and effective prediction of microRNA/target duplexes
- roary (3.13.0+dfsg-2) [universe]
- high speed stand alone pan genome pipeline
- rocketcea (1.2.1-2build2) [universe]
- NASA Chemical Equilibrium, wrapped in Python
- rockhopper (2.0.3+dfsg2-5) [universe]
- system for analyzing bacterial RNA-seq data
- rocs (4:25.08.1-0ubuntu1) [universe]
- graph theory IDE
- roguenarok (1.0.1-3) [universe]
- versatile and scalable algorithm for rogue taxon identification
- routine-update (0.2.3) [universe]
- routine updater for a Debian source package
- rsem (1.3.3+dfsg-3build1) [universe]
- RNA-Seq by Expectation-Maximization
- rtax (0.984-8) [universe]
- Classification of sequence reads of 16S ribosomal RNA gene
- rudof (0.1.62+ds-1) [universe]
- RDF data shape processing - CLI tool
- runcircos-gui (0.0+git20200528.82dda8c-1build2) [universe]
- GUI tool to run circos
- sac2mseed (1.13+ds1-1build1) [universe]
- Convert SAC waveform data to MiniSEED
- saga (9.8.0+dfsg-1) [universe]
- System for Automated Geoscientific Analyses
- saga-common (9.8.0+dfsg-1) [universe]
- SAGA GIS architecture independent files
- saint (2.5.0+dfsg-4build2) [universe]
- Significance Analysis of INTeractome
- salmid (0.1.23-5) [universe]
- rapid Kmer based Salmonella identifier from sequence data
- salmon (1.10.2+ds1-1build2) [universe]
- wicked-fast transcript quantification from RNA-seq data
- sambamba (1.0.1+dfsg-2build1) [universe]
- tools for working with SAM/BAM data
- samblaster (0.1.26-4) [universe]
- marks duplicates, extracts discordant/split reads
- samclip (0.4.0-4) [universe]
- filter SAM file for soft and hard clipped alignments
- samtools (1.21-1) [universe]
- processing sequence alignments in SAM, BAM and CRAM formats
- samtools-test (1.21-1) [universe]
- test files for the samtools package
- saods9 (8.6+repack-5ubuntu2) [universe]
- Image display tool for astronomy
- saoxmlrpc (8.6+repack-5ubuntu2) [universe]
- Tcl XML-RPC implementation from SAO
- sasview (6.0.1-2) [universe]
- Small Angle Scattering Analysis suite
- sat4j (2.3.6-1) [universe]
- Efficient library of SAT solvers in Java
- savi (1.6.0-1) [universe]
- satellite constellation visualisation
- savvy-util (2.1.0-3) [universe]
- conversion tool for SAV file format
- sbmltoolbox (4.1.0-5.1) [universe]
- libsbml toolbox for octave and matlab
- scamp (2.14.0-1) [universe]
- Compute astrometric and photometric solutions
- science-distributedcomputing (1.15) [universe]
- Debian Science Distributed Computing packages
- science-electrophysiology (1.15) [universe]
- Debian Science packages for Electrophysiology
- science-highenergy-physics (1.15) [universe]
- Debian Science High Energy Physics packages
- science-highenergy-physics-dev (1.15) [universe]
- Debian Science High Energy Physics development packages
- science-machine-learning (1.15) [universe]
- Debian Science Machine Learning packages
- science-nanoscale-physics (1.15) [universe]
- Debian Science Nanoscale Physics packages
- science-nanoscale-physics-dev (1.15) [universe]
- Debian Science Nanoscale Physics development packages
- science-neuroscience-modeling (1.15) [universe]
- Debian Science packages for modeling of neural systems
- science-physics-dev (1.15) [universe]
- Debian Science Physics-dev packages
- science-psychophysics (1.15) [universe]
- Debian Science packages for Psychophysics
- science-simulations (1.15) [universe]
- Debian Science Simulation packages
- scoary (1.6.16-10) [universe]
- pangenome-wide association studies
- scrappie (1.4.2-8build3) [universe]
- basecaller for Nanopore sequencer
- scrm (1.7.4-2) [universe]
- simulator of evolution of genetic sequences
- sctk (2.4.12+dfsg-1) [universe]
- speech recognition scoring toolkit
- scythe (0.994+git20141017.20d3cff-5) [universe]
- Bayesian adaptor trimmer for sequencing reads
- sdml (0.3.2+20250310-1) [universe]
- CLI tool for Simple Domain Modeling Language (SDML)
- seaview (1:5.0.5-3) [multiverse]
- Multiplatform interface for sequence alignment and phylogeny
- secrecy (0.0.5+ds-4) [universe]
- tool to handle libsecrecy keys and encrypted files
- seer (1.1.4-8build3) [universe]
- genomic sequence element (kmer) enrichment analysis
- segemehl (0.3.4-5build2) [universe]
- short read mapping with gaps
- sentencepiece (0.2.0-1build3) [universe]
- Unsupervised text tokenizer and detokenizer
- sepp (4.5.5+dfsg-1) [universe]
- phylogeny with ensembles of Hidden Markov Models
- seq-gen (1.3.4-2) [universe]
- simulate the evolution of nucleotide or amino acid sequences
- seqan-needle (1.0.3+ds-1) [universe]
- pre-filter for the counting of very large collections of nucleotide sequences
- seqan-raptor (3.0.1+ds-9) [universe]
- pre-filter for querying very large collections of nucleotide sequences
- seqcluster (1.2.9+ds-5) [multiverse]
- analysis of small RNA in NGS data
- seqkit (2.9.0+ds-1) [universe]
- cross-platform and ultrafast toolkit for FASTA/Q file manipulation
- seqkit-examples (2.9.0+ds-1) [universe]
- examples for seqkit: toolkit for FASTA/Q file manipulation
- seqmagick (0.8.6-3) [universe]
- imagemagick-like frontend to Biopython SeqIO
- seqprep (1.3.2-9) [universe]
- stripping adaptors and/or merging paired reads of DNA sequences with overlap
- seqprep-data (1.3.2-9) [universe]
- example data set for seqprep - only used for testing
- seqsero (1.0.1+dfsg-6) [universe]
- Salmonella serotyping from genome sequencing data
- seqtk (1.4-2) [universe]
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
- seriation (0.1+git20210125.fc7b8cb-1) [universe]
- finds a suitable linear order for a set of objects
- seriation-data (0.1+git20210125.fc7b8cb-1) [universe]
- test data for seriation
- sga (0.10.15-7build1) [universe]
- de novo genome assembler that uses string graphs
- shapeit4 (4.2.2+dfsg-1build5) [universe]
- fast and accurate method for estimation of haplotypes (phasing)
- shasta (0.12.0-1build1) [universe]
- nanopore whole genome assembly (binaries and scripts)
- shelxle (1.0.1552-1build2) [universe]
- graphical user interface for SHELXL
- shiny-server (1.5.20.1002-4) [universe]
- put Shiny web apps online
- shovill (1.1.0-9) [universe]
- Assemble bacterial isolate genomes from Illumina paired-end reads
- shovill-examples (1.1.0-9) [universe]
- Test Data for shovill
- sibelia (3.0.7+dfsg-3) [universe]
- comparative genomics tool
- sibelia-examples (3.0.7+dfsg-3) [universe]
- comparative genomics tool (example data)
- sibsim4 (0.20-5) [universe]
- align expressed RNA sequences on a DNA template
- sickle (1.33+git20150314.f3d6ae3-2) [universe]
- windowed adaptive trimming tool for FASTQ files using quality
- sideretro (1.1.6-2) [universe]
- pipeline for detecting Somatic Insertion of DE novo RETROcopies
- sift (4.0.3b-6) [multiverse]
- predicts if a substitution in a protein has a phenotypic effect
- sightcalibrator (25.0.0-1build1) [universe]
- Camera calibration software
- sightviewer (25.0.0-1build1) [universe]
- DICOM viewer
- sigma-align (1.1.3-9build1) [universe]
- Simple greedy multiple alignment of non-coding DNA sequences
- sigviewer (0.6.4-3build2) [universe]
- GUI viewer for biosignals such as EEG, EMG, and ECG
- silx (2.2.1+dfsg-3build1) [universe]
- Toolbox for X-Ray data analysis - Executables
- sim4 (0.0.20121010-9) [universe]
- tool for aligning cDNA and genomic DNA
- sim4db (0~20150903+r2013-9build1) [universe]
- batch spliced alignment of cDNA sequences to a target genome
- simka (1.5.3-8build3) [universe]
- comparative metagenomics method dedicated to NGS datasets
- simkamin (1.5.3-8build3) [universe]
- approximate comparative metagenomics method dedicated to NGS datasets
- simrisc (16.02.00-1) [universe]
- simulation model for breast/lung cancer risk
- siril (1.2.6-1build1) [universe]
- astronomical image processing tool
- siril-common (1.2.6-1build1) [universe]
- architecture-independent files for siril
- ska (1.0+dfsg-6) [universe]
- Split Kmer Analysis
- skesa (2.4.0-6build4) [universe]
- strategic Kmer extension for scrupulous assemblies
- skewer (0.2.2-6) [universe]
- post-processing of high-throughput DNA sequence reads
- skycat (3.1.2+starlink1~b+dfsg-9) [universe]
- Image visualization and access to catalogs and data for astronomy
- slang-xfig (0.2.0~.138-1) [universe]
- produce plots and drawings through Xfig's fig2dev in S-Lang
- smalt (0.7.6-13) [universe]
- Sequence Mapping and Alignment Tool
- smalt-examples (0.7.6-13) [universe]
- Sequence Mapping and Alignment Tool (examples)
- smithwaterman (0.0+git20160702.2610e25-12) [universe]
- determine similar regions between two strings or genomic sequences
- smrtanalysis (0~20210112) [universe]
- software suite for single molecule, real-time sequencing
- snakemake (7.32.4-7) [universe]
- pythonic workflow management system
- snap (2013-11-29-11) [universe]
- location of genes from DNA sequence with hidden markov model
- snap-aligner (2.0.3+dfsg-2) [universe]
- Scalable Nucleotide Alignment Program
- snaphu (2.0.7-1) [multiverse]
- Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
- sniffles (2.6.0-1) [universe]
- structural variation caller using third-generation sequencing
- snippy (4.6.0+dfsg-5) [universe]
- rapid haploid variant calling and core genome alignment
- snippy-examples (4.6.0+dfsg-5) [universe]
- rapid haploid variant calling and core genome alignment (examples)
- snp-sites (2.5.1-2) [universe]
- Binary code for the package snp-sites
- snpomatic (1.0-7) [universe]
- fast, stringent short-read mapping software
- soapaligner (2.20-5) [universe]
- aligner of short reads of next generation sequencers
- soapdenovo (1.05-6) [universe]
- short-read assembly method to build de novo draft assembly
- soapdenovo2 (242+dfsg-4) [universe]
- short-read assembly method to build de novo draft assembly
- soapsnp (1.03-5) [universe]
- resequencing utility that can assemble consensus sequence of genomes
- solvate (1.0-3) [multiverse]
- arranges water molecules around protein structures
- solvate-doc (1.0-3) [multiverse]
- Documentation for solvate
- sortmerna (4.3.7-3) [universe]
- tool for filtering, mapping and OTU-picking NGS reads
- (2.28.2+ds-1) [universe]
- Source extractor for astronomical images
- sp800-90b-entropy-assessment (1.1.8-3) [universe]
- Estimating the quality of a source of entropy
- spaced (1.2.0-201605+dfsg-4) [universe]
- alignment-free sequence comparison using spaced words
- spades (4.0.0+really3.15.5+dfsg-1) [universe]
- genome assembler for single-cell and isolates data sets
- spaln (3.0.2+dfsg-2ubuntu2) [universe]
- splicing-aware transcript-alignment to genomic DNA
- spaln-data (3.0.2+dfsg-2ubuntu2) [universe]
- splicing-aware transcript-alignment to genomic DNA (data)
- spass (3.9-1.1) [universe]
- automated theorem prover for first-order logic with equality
- spatialite-bin (5.1.0a-2build1) [universe]
- Geospatial extension for SQLite - tools
- spd (1.3.0-2) [universe]
- Synchrotron image corrections and azimuthal integration
- splash (3.11.2-1) [universe]
- Visualisation tool for Smoothed Particle Hydrodynamics simulation
- spoa (4.1.4-2) [universe]
- SIMD partial order alignment tool
- sprai (0.9.9.23+dfsg1-3) [universe]
- single-pass sequencing read accuracy improver
- spread-phy (1.0.7+dfsg-5) [multiverse]
- analyze and visualize phylogeographic reconstructions
- spview (2.0.2-1) [universe]
- Spectrum Viewer
- sra-toolkit (3.2.1+dfsg-4ubuntu5) [universe]
- utilities for the NCBI Sequence Read Archive
- srst2 (0.2.0-13) [universe]
- Short Read Sequence Typing for Bacterial Pathogens
- ssake (4.0.1-2) [universe]
- genomics application for assembling millions of very short DNA sequences
- ssake-examples (4.0.1-2) [universe]
- example data for SSAKE, a genomic assembler of short reads
- sspace (2.1.1+dfsg-7) [universe]
- scaffolding pre-assembled contigs after extension
- ssshtest (0.0+git20220105.0d6df3d-1) [universe]
- stupid simple (ba)sh testing
- ssw-align (1.1-15) [universe]
- Smith-Waterman aligner based on libssw
- stacks (2.68+dfsg-2) [universe]
- pipeline for building loci from short-read DNA sequences
- staden (2.0.0+b11-7) [universe]
- DNA sequence assembly (Gap4/Gap5), editing and analysis tools
- staden-common (2.0.0+b11-7) [universe]
- Architecture independent files for Staden
- staden-io-lib-examples (1.15.0-1.1build2) [universe]
- programs for manipulating DNA sequencing files (usage examples)
- staden-io-lib-utils (1.15.0-1.1build2) [universe]
- programs for manipulating DNA sequencing files
- stardata-common (0.8+nmu1) [universe]
- Common framework to manage astronomy packages
- starpu-contrib-examples (1.4.7+dfsg-2) [multiverse]
- Task scheduler for heterogeneous multicore machines - exs
- starpu-examples (1.4.5+dfsg-4build2) [universe]
- Task scheduler for heterogeneous multicore machines - exs
- stellarium (24.3-1build3) [universe]
- real-time photo-realistic sky generator
- stellarium-data (24.3-1build3) [universe]
- Stellarium data files
- stiff (2.4.0-7build1) [universe]
- convert scientific FITS images to the TIFF format
- stilts (3.5.2-1) [universe]
- Starlink Tables Infrastructure Library Tool Set
- stimfit (0.16.7-1) [universe]
- Program for viewing and analyzing electrophysiological data
- stringtie (2.2.1+ds-3build2) [universe]
- assemble short RNAseq reads to transcripts
- subarch-select (0.2-1) [universe]
- Select among binaries based upon x86 microarchitecture support
- subread (2.0.8+dfsg-1) [universe]
- toolkit for processing next-gen sequencing data
- subread-data (2.0.8+dfsg-1) [universe]
- data files for subread package
- suitename (0.4.130509+git20210223.ebb1325-1) [universe]
- categorize each suite in an RNA backbone
- sumaclust (1.0.36+ds-4) [universe]
- fast and exact clustering of genomic sequences
- sumatra (1.0.36+ds-2) [universe]
- fast and exact comparison and clustering of sequences
- sumo (1.18.0+dfsg-4build2) [universe]
- Simulation of Urban MObility (SUMO)
- surankco (0.0.r5+dfsg-4) [universe]
- Supervised Ranking of Contigs in de novo Assemblies
- surpyvor (0.5-2) [universe]
- modification of VCF files with SURVIVOR
- survex (1.4.17-1) [universe]
- cave surveying and mapping software
- survex-aven (1.4.17-1) [universe]
- sophisticated cave survey viewer for Survex
- survivor (1.0.7-4) [universe]
- tool set for simulating/evaluating SVs
- svim (2.0.0-3) [universe]
- Structural variant caller for long sequencing reads
- swarm (3.1.5+dfsg-2) [universe]
- robust and fast clustering method for amplicon-based studies
- swarp (2.41.5-2) [universe]
- Resample and co-add together FITS images
- swe-basic-data (4.0-20221111-2) [universe]
- Swiss Ephemeris library (basic set of ephemeris files).
- swe-standard-data (4.0-20221111-2) [universe]
- Swiss Ephemeris library (standard set of ephemeris files).
- sweed (3.2.1+dfsg-6) [universe]
- assessment of SNPs for their evolutionary advantage
- t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) [universe]
- Multiple Sequence Alignment
- t-coffee-examples (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) [universe]
- annotated examples for the use of T-Coffee
- tabix (1.21+ds-1) [universe]
- generic indexer for TAB-delimited genome position files
- tandem-mass (1:201702011-1build1) [universe]
- mass spectrometry software for protein identification
- tantan (51-1) [universe]
- low complexity and tandem repeat masker for biosequences
- tcl-fitstcl (2.5-3) [universe]
- Tcl interface to FITS files
- tclfitsy (8.6+repack-5ubuntu2) [universe]
- Tcl FITS Extension
- terraintool (1.19-2) [universe]
- Generates survex/therion terrain models from SRTM/NASADEM data.
- theli (3.1.4-2) [universe]
- Astronomical image data reduction pipeline
- therion (6.3.4-2) [universe]
- Cave surveying - 2D and 3D drawing software
- therion-doc (6.3.4-2) [universe]
- Documentation for Therion Cave surveying software
- therion-viewer (6.3.4-2) [universe]
- Cave surveying - 3D viewer for therion models
- theseus (3.3.0-14build1) [universe]
- superimpose macromolecules using maximum likelihood
- theseus-examples (3.3.0-14build1) [universe]
- superimpose macromolecules using maximum likelihood (examples)
- thesias (3.1.1-4) [universe]
- Testing Haplotype Effects In Association Studies
- threeb (0.0~git20220106110332.a3144e0-6build1) [universe]
- 3B Microscopy Analysis Software - command-line tool
- threeb-imagej (0.0~git20220106110332.a3144e0-6build1) [universe]
- 3B Microscopy Analysis Software - ImageJ plugin
- tiddit (3.6.1+dfsg-2build1) [universe]
- structural variant calling
- tigr-glimmer (3.02b-6) [universe]
- Gene detection in archea and bacteria
- timbl (6.10-3build1) [universe]
- Tilburg Memory Based Learner
- timblserver (1.19-2build1) [universe]
- Server extensions for Timbl
- tiny-dnn (1.0.0a3+ds-5) [universe]
- header only deep learning framework in C++
- tippecanoe (2.53.0-1) [universe]
- build vector tilesets from large collections of GeoJSON features
- tksao (8.6+repack-5ubuntu2) [universe]
- Tk widgets for astronomical imaging and data visualization
- tm-align (20190822+dfsg-3ubuntu1) [universe]
- structural alignment of proteins
- tnseq-transit (3.3.12-1) [universe]
- statistical calculations of essentiality of genes or genomic regions
- tombo (1.5.1-7build2) [universe]
- identification of modified nucleotides from raw nanopore sequencing data
- topcat (4.10.3-1) [universe]
- Tool for OPerations on Catalogues And Tables
- tophat-recondition (1.4-3) [universe]
- post-processor for TopHat unmapped reads
- topp (2.6.0+cleaned1-4build7) [universe]
- set of programs implementing The OpenMS Proteomic Pipeline
- topparser (1.3-4) [universe]
- Conversion utility from pockettopo to therion, for cave surveying
- toppic (1.5.3+dfsg1-1build4) [universe]
- Top-down proteoform identification and characterization (programs)
- toppic-common (1.5.3+dfsg1-1build4) [universe]
- Top-down proteoform identification and characterization (common data)
- toppred (1.10-10) [universe]
- transmembrane topology prediction
- tortoize (2.0.15-1) [universe]
- Application to calculate ramachandran z-scores
- toulbar2 (1.2.1+dfsg-0.1build2) [universe]
- Exact combinatorial optimization for Graphical Models
- toulbar2-doc (1.2.1+dfsg-0.1build2) [universe]
- Exact combinatorial optimization for Graphical Models - documentation
- trace2dbest (3.0.1-2) [universe]
- bulk submission of chromatogram data to dbEST
- trace2dbest-doc (3.0.1-2) [universe]
- Documentation and sample files for trace2dbest
- tracetuner (3.0.6~beta+dfsg-4) [universe]
- interpretation of DNA Sanger sequencing data
- transdecoder (5.7.1-2) [universe]
- find coding regions within RNA transcript sequences
- transfuse (0.7.6-1) [universe]
- Runs formatted documents through transformations/translation
- transrate-tools (1.0.0-5) [universe]
- helper for transrate
- transtermhp (2.09-5) [universe]
- find rho-independent transcription terminators in bacterial genomes
- travis (220729-1) [universe]
- trajectory analyzer and visualizer
- tree-ppuzzle (5.3~rc16+dfsg-12build1) [universe]
- Parallelized reconstruction of phylogenetic trees by maximum likelihood
- tree-puzzle (5.3~rc16+dfsg-12build1) [universe]
- Reconstruction of phylogenetic trees by maximum likelihood
- tree-puzzle-doc (5.3~rc16+dfsg-12build1) [universe]
- Reconstruction of phylogenetic trees by maximum likelihood (doc)
- treeview (1.2.0+dfsg-2) [multiverse]
- Java re-implementation of Michael Eisen's TreeView
- treeviewx (0.5.1+git20100823.7e4d0e9-4build3) [universe]
- Displays and prints phylogenetic trees
- trf (4.09.1-6) [universe]
- locate and display tandem repeats in DNA sequences
- trf-examples (4.09.1-6) [universe]
- locate and display tandem repeats in DNA sequences (examples)
- triangle-bin (1.6-6) [multiverse]
- High-quality 2-D mesh generator -- binary programs
- trim-galore (0.6.10-1) [universe]
- automate quality and adapter trimming for DNA sequencing
- trimmomatic (0.39+dfsg-2) [universe]
- flexible read trimming tool for Illumina NGS data
- trinculo (0.96+dfsg-4) [universe]
- toolkit to carry out genetic association for multi-category phenotypes
- trinityrnaseq (2.15.2+dfsg-1) [universe]
- RNA-Seq De novo Assembly
- trinityrnaseq-examples (2.15.2+dfsg-1) [universe]
- RNA-Seq De novo Assembly common example and testing files
- trnascan-se (2.0.12+ds-1) [multiverse]
- detection of transfer RNA genes in genomic sequence
- trnascan-se-common (2.0.12+ds-1) [multiverse]
- detection of transfer RNA genes in genomic sequence (common files)
- tunnelx (20190701-1) [universe]
- Cave Survey drawing software
- tvc (5.0.3+git20151221.80e144e+dfsg-5build4) [universe]
- genetic variant caller for Ion Torrent sequencing platforms
- twms (0.07z+git20201202+bb7c3f8-2.1) [universe]
- tiny web map service
- twopaco (1.0.0+dfsg-1) [universe]
- build the compacted de Bruijn graph from many complete genomes
- ubertooth (2018.12.R1-5.2ubuntu1) [universe]
- 2.4 GHz wireless development platform for Bluetooth experimentation
- ubertooth-firmware (2018.12.R1-5.2ubuntu1) [universe]
- Firmware for Ubertooth
- ubertooth-firmware-source (2018.12.R1-5.2ubuntu1) [universe]
- Source code for the Ubertooth firmware
- uc-echo (1.12-19) [universe]
- error correction algorithm designed for short-reads from NGS
- ucto (0.35-2build1) [universe]
- Unicode Tokenizer
- uctodata (0.11-2) [universe]
- Data files for Ucto
- ucx-utils (1.19.0+ds-1) [universe]
- Utilities for the UCX messaging library
- ugene (51.0+dfsg-3) [multiverse]
- integrated bioinformatics toolkit
- ugene-data (51.0+dfsg-3) [multiverse]
- required data for UGENE - integrated bioinformatics toolkit
- uhd-doc (4.8.0.0+ds1-2ubuntu2.1) [universe]
- universal hardware driver for Ettus Research products - doc
- uhd-host (4.8.0.0+ds1-2ubuntu2.1) [universe]
- universal hardware driver for Ettus Research products - host apps
- umap-learn (0.5.4+dfsg-1) [universe]
- Uniform Manifold Approximation and Projection
- umis (1.0.9-2build1) [universe]
- tools for processing UMI RNA-tag data
- umis-examples (1.0.9-2build1) [universe]
- tools for processing UMI RNA-tag data (examples)
- uncalled (2.3+ds-3build2) [universe]
- Utility for Nanopore Current Alignment to Large Expanses of DNA
- unicycler (0.5.1+dfsg-3) [universe]
- hybrid assembly pipeline for bacterial genomes
- unicycler-data (0.5.1+dfsg-3) [universe]
- hybrid assembly pipeline for bacterial genomes (data package)
- unifrac-tools (1.4-3build3) [universe]
- high-performance phylogenetic diversity calculations (binaries)
- unihedron-device-manager (1.0.0.337-1build2) [universe]
- Unihedron Device manager (UDM)
- unikmer (0.20.0-1) [universe]
- Toolkit for nucleic acid k-mer analysis
- units-filter (4.2.1-1) [universe]
- Parser for expressions concerning physical values
- units-master (4.2.1-1) [universe]
- Powerful units converter with a GUI
- v-sim (3.8.0-1) [universe]
- Visualize atomic structures
- v-sim-common (3.8.0-1) [universe]
- Visualize atomic structures (support files)
- v-sim-plugins (3.8.0-1) [universe]
- Plugins for V_Sim (a 3D visualization package)
- varna (3-93+ds-7) [universe]
- Visualization Applet for RNA
- varscan (2.4.3+dfsg-4) [multiverse]
- variant detection in next-generation sequencing data
- vcfanno (0.3.5+ds-2) [universe]
- annotate a VCF with other VCFs/BEDs/tabixed files
- vcfanno-examples (0.3.5+ds-2) [universe]
- examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files
- vcftools (0.1.16-3) [universe]
- Collection of tools to work with VCF files
- vdjtools (1.2.1+git20190311+repack-2) [multiverse]
- framework for post-analysis of B/T cell repertoires
- velvet (1.2.10+dfsg1-9) [universe]
- Nucleic acid sequence assembler for very short reads
- velvet-example (1.2.10+dfsg1-9) [universe]
- Example data for the Velvet sequence assembler
- velvet-long (1.2.10+dfsg1-9) [universe]
- Nucleic acid sequence assembler for very short reads, long version
- velvet-tests (1.2.10+dfsg1-9) [universe]
- Test data for the Velvet sequence assembler
- velvetoptimiser (2.2.6-5) [universe]
- automatically optimise Velvet do novo assembly parameters
- veryfasttree (4.0.4+dfsg-2) [universe]
- Speeding up the estimation of phylogenetic trees from sequences
- veusz (3.6.2-1.1build3) [universe]
- 2D and 3D scientific plotting application with graphical interface
- vg (1.59.0+ds-0.1) [universe]
- tools for working with genome variation graphs
- vienna-rna (2.6.4+dfsg-1build2) [multiverse]
- RNA sequence analysis
- virulencefinder (2.0.5-2) [universe]
- identify virulence genes in total or partial sequenced isolates of bacteria
- virulencefinder-examples (2.0.5-2) [universe]
- example data for virulencefinder
- visp-images-data (3.6.0-1) [universe]
- visual servoing library - dataset reference files
- vmatch (2.3.1+dfsg-9) [universe]
- large scale sequence analysis software
- voro++ (0.5+revert-to-0.4.6+dfsg1-1) [universe]
- library for the computation of the Voronoi diagram
- voro++-examples (0.5+revert-to-0.4.6+dfsg1-1) [universe]
- library for the computation of the Voronoi diagram (examples)
- voronota (1.29.4307+ds-2) [universe]
- Voronoi diagram-based tool to find atom contacts
- votca (2024.2-4build2) [universe]
- Molecular dynamics analysis - coarse-graining and charge transport
- votca-data (2024.2-4build2) [universe]
- VOTCA molecular dynamics analysis - basis sets and scripts
- votca-tutorials (2024.2-4build2) [universe]
- VOTCA molecular dynamics analysis - tutorials
- vsearch (2.30.0-1) [universe]
- tool for processing metagenomic sequences
- vsearch-examples (2.30.0-1) [universe]
- Test Data for vsearch tool for processing metagenomic sequences
- vt (0.57721+ds-3build2) [universe]
- toolset for short variant discovery in genetic sequence data
- vt-examples (0.57721+ds-3build2) [universe]
- toolset for short variant discovery in genetic sequence data (examples)
- wannier90 (3.1.0+ds-10) [universe]
- Maximally Localized Wannier Functions - executables
- wannier90-data (3.1.0+ds-10) [universe]
- Maximally Localized Wannier Functions - documentation and examples
- wcslib-tools (8.4+ds-1) [universe]
- Command line tools utilizing wcslib
- wcstools (3.9.7-2) [universe]
- Handle the WCS of a FITS image
- weightwatcher (1.12+dfsg-3) [universe]
- Combine maps and polygon data for astronomical image processing
- weii (0.1.2-5) [universe]
- read Wii balance board as a weight scale
- weka (3.6.14-4) [universe]
- Machine learning algorithms for data mining tasks
- wham-align (0.1.5-8) [universe]
- Wisconsin's High-Throughput Alignment Method
- wigeon (20101212+dfsg1-6) [universe]
- reimplementation of the Pintail 16S DNA anomaly detection utility
- wise (2.4.1-27) [universe]
- comparison of biopolymers, like DNA and protein sequences
- wsclean (3.6-2) [universe]
- Fast generic widefield interferometric imager
- wtdbg2 (2.5-10) [universe]
- de novo sequence assembler for long noisy reads
- wtdbg2-examples (2.5-10) [universe]
- Examples for wtdbg - de novo sequence assembler
- wxastrocapture (1.8.1+git20140821.796e1a1+dfsg-2build3) [universe]
- Windows linuX Astronomy Capture
- x13as (1.1-b61-1) [multiverse]
- seasonal adjustment software for modeling time series
- xbs (0-12) [universe]
- 3-d models and movies of molecules
- xcas (1.9.0.93+dfsg2-3build1) [universe]
- Computer Algebra System - console and graphical calculator
- xcrysden (1.6.2-5) [universe]
- Crystalline and Molecular Structure Visualizer
- xcrysden-data (1.6.2-5) [universe]
- Crystalline and Molecular Structure Visualizer (Data Files)
- xdrawchem (1:1.11.1-2) [universe]
- Chemical structures and reactions editor
- xfoil (6.99.dfsg+1-3) [universe]
- program for the design and analysis of subsonic airfoils
- xgterm (2.2+dfsg-1) [universe]
- Terminal emulator to work with IRAF
- ximtool (2.2+dfsg-1) [universe]
- Interactive image display program for the X Window System
- xmakemol (5.16-11) [universe]
- program for visualizing atomic and molecular systems
- xmakemol-gl (5.16-11) [universe]
- program for visualizing atomic and molecular systems (OpenGL)
- xmds2 (3.1.0+dfsg2-10) [universe]
- eXtensible Multi-Dimensional Simulator
- xmpsolve (3.2.1-11) [universe]
- Multiprecision polynomial solver (graphical version)
- xpa-tools (2.1.20-3) [universe]
- Tools for seamless communication between Unix programs
- xplot (1.19-9.2) [universe]
- simple on-screen x-y column data plotter
- xplot-xplot.org (0.90.7.1-5) [universe]
- fast tool to graph and visualize lots of data
- xpore (2.1-2) [universe]
- Nanopore analysis of differential RNA modifications
- xppaut (6.11b+1.dfsg-1.1) [universe]
- Phase Plane Plus Auto: Solves many kinds of equations
- xpython (0.17.2+~0.6.3-0.1build1) [universe]
- Native jupyter kernel for python (binary)
- xtb (6.7.1-2) [universe]
- semiempirical extended tight-binding program package
- xyscan (4.66-1) [universe]
- data thief for scientists
- yade (2025.2.0-1build1) [universe]
- Platform for discrete element modeling
- yagv (0.4~20171211.r234ef16+dfsg-2) [universe]
- yet another G-code viewer
- yaha (0.1.83-3) [universe]
- find split-read mappings on single-end queries
- yanagiba (1.0.0-5) [universe]
- filter low quality Oxford Nanopore reads basecalled with Albacore
- yanosim (0.1-6) [universe]
- read simulator nanopore DRS datasets
- yorick-av (0.0.6-1build3) [universe]
- write movies from Yorick in various formats
- yorick-gy (0.0.5-4) [universe]
- GObject introspection and Gtk bindings for Yorick
- yorick-gyoto (2.0.2-6build4) [universe]
- General relativistic geodesic integration for the Yorick language
- yorick-mira (1.1.0+git20170124.3bd1c3~dfsg1-3) [universe]
- optical interferometry image reconstruction within Yorick
- yorick-mpeg (0.1-4) [universe]
- MPEG output support for the Yorick language
- yorick-svipc (0.16-7build3) [universe]
- interprocess communication (shared memory...) for Yorick
- yorick-ygsl (1.2.1-2) [universe]
- GSL special functions plugin for the Yorick language
- yorick-ynfft (1.0.4-2) [universe]
- nonequispaced fast Fourier transform for Yorick
- z3 (4.13.3-1) [universe]
- theorem prover from Microsoft Research
- z88 (15+dfsg-1) [universe]
- Finite Element Analysis Program - runtime
- zegrapher (3.1.1-5) [universe]
- plotting mathematical functions and sequences on the plane
- zfp (1.0.1-4build3) [universe]
- Fixed-Rate Compressed Floating-Point Arrays - binary programs
- ztex-bmp (20120314-2build1) [universe]
- universal macro processor
packages