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Links for bioperl

Ubuntu Resources:

• Bug Reports
• Ubuntu Changelog
• Copyright File
• Debian Source Repository (Git)

Maintainer:

• Ubuntu MOTU Developers (Mail Archive)

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

• Debian Med Packaging Team (Mail Archive)
• Charles Plessy
• Steffen Moeller
• Andreas Tille
• Olivier Sallou

It should generally not be necessary for users to contact the original maintainer.

External Resources:

• Homepage [www.bioperl.org]

The following binary packages are built from this source package:

bioperl

Perl tools for computational molecular biology

libbio-perl-perl

BioPerl core perl modules

Other Packages Related to bioperl

build-depends

build-depends-indep

• adep: debhelper-compat (= 13)

  Package not available

• adep: libmodule-build-perl

  framework for building and installing Perl modules

• idep: perl

  Larry Wall's Practical Extraction and Report Language

• idep: rename

  Perl extension for renaming multiple files

• idep: libio-string-perl

  Emulate IO::File interface for in-core strings

• idep: libdata-stag-perl

  module to manipulate Structured Tags datastructures

• idep: libtest-most-perl

  Perl module with the most commonly needed test functions and features

• idep: libace-perl

  Object-Oriented Access to ACEDB Databases

• idep: libalgorithm-munkres-perl

  extension for Munkres' solution to Assignment problem

• idep: libarray-compare-perl

  Perl module to easily compare arrays

• idep: libbio-asn1-entrezgene-perl

  parser for NCBI Entrez Gene and NCBI Sequence records

• idep: libbio-samtools-perl

  Perl interface to SamTools library for DNA sequencing

• idep: libclass-unload-perl

  Perl module to unload a class at runtime

• idep: libcgi-pm-perl

  module for Common Gateway Interface applications

• idep: libclone-perl

  module for recursively copying Perl datatypes

• idep: libconvert-binary-c-perl

  Binary Data Conversion using C Types

• idep: libdbd-sqlite3-perl

  Perl DBI driver with a self-contained RDBMS

• idep: libdbd-mysql-perl

  Perl5 database interface to the MariaDB/MySQL database

• idep: libdbd-pg-perl

  Perl DBI driver for the PostgreSQL database server

• idep: libgd-perl

  Perl module wrapper for libgd

• idep: libgraph-perl

  Perl module for graph data structures and algorithms

• idep: libgraphviz-perl

  Perl interface to the GraphViz graphing tool

• idep: libhtml-parser-perl

  collection of modules that parse HTML text documents

• idep: libhtml-tableextract-perl

  module for extracting the content contained in HTML tables

• idep: liblist-moreutils-perl

  Perl module with additional list functions not found in List::Util

• idep: libpath-class-perl

  module for cross-platform path specification manipulation

• idep: libperlio-eol-perl

  PerlIO layer for normalizing line endings

• idep: libpostscript-perl

  Perl module to generate PostScript code

• idep: libset-scalar-perl

  Perl interface for operations on finite sets

• idep: libsoap-lite-perl

  Perl implementation of a SOAP client and server

• idep: libsort-naturally-perl

  Sort naturally - sort lexically except for numerical parts

• idep: libspreadsheet-parseexcel-perl

  Perl module to access information from Excel Spreadsheets

• idep: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

• idep: libstorable-perl

  Package not available

• idep: libsvg-perl

  perl module to generate SVG images

• idep: libsvg-graph-perl

  module to visualize data in SVG format

• idep: libtest-memory-cycle-perl

  Perl module that verifies code hasn't left circular references

• idep: libtest-pod-perl

  module to test for POD errors

• idep: libtest-weaken-perl

  Perl module to test that freed memory objects were actually freed

• idep: liburi-perl

  module to manipulate and access URI strings

• idep: libxml-dom-xpath-perl

  adds XPath support to XML::DOM, using XML::XPathEngine

• idep: libxml-parser-perl

  Perl module for parsing XML files

• idep: libxml-sax-perl

  Perl module for using and building Perl SAX2 XML processors

• idep: libxml-sax-writer-perl

  Perl module for a SAX2 XML writer

• idep: libxml-twig-perl

  Perl module for processing huge XML documents in tree mode

• idep: libxml-simple-perl

  Perl module for reading and writing XML

• idep: libxml-writer-perl

  Perl module for writing XML documents

• idep: libxml-libxml-perl

  Perl interface to the libxml2 library

• idep: libwww-perl

  simple and consistent interface to the world-wide web

• idep: libyaml-perl

  YAML Ain't Markup Language

• idep: libtest-requiresinternet-perl

  module to easily test network connectivity

• idep: libxml-sax-expatxs-perl

  Perl SAX 2 XS extension to Expat parser

Download bioperl

File	Size (in kB)	MD5 checksum
bioperl_1.7.8-1.dsc	3.1 kB	b1e51a10b9f01506db230788e4b5505c
bioperl_1.7.8.orig.tar.gz	7,351.2 kB	8164ac52f37bc6355ec1b69633ac795f
bioperl_1.7.8-1.debian.tar.xz	11.6 kB	71bbadb297af9f85e1928b5f7c69783f

Debian Package Source Repository (VCS: Git)

https://salsa.debian.org/med-team/bioperl.git

Debian Package Source Repository (Browsable)

https://salsa.debian.org/med-team/bioperl