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Source Package: lumpy-sv (0.3.1+dfsg-7build3) [universe]

Links for lumpy-sv

Ubuntu Resources:

Maintainer:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Nilesh Patra

It should generally not be necessary for users to contact the original maintainer.

External Resources:

The following binary packages are built from this source package:
lumpy-sv
general probabilistic framework for structural variant discovery
lumpy-sv-examples
general probabilistic framework for structural variant discovery (data)

Other Packages Related to lumpy-sv

  • build-depends
  • build-depends-indep
  • adep: debhelper-compat (= 13)
    Package not available
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    Debian helper tools for packaging Python libraries and applications
  • adep: python3
    interactive high-level object-oriented language (default python3 version)
  • adep: libbamtools-dev
    C++ API for manipulating BAM (genome alignment) files
  • adep: libfastahack-dev
    library for indexing and sequence extraction from FASTA files (devel)
  • adep: libgzstream-dev
    provide functionality of zlib C-library in a C++ iostream (development)
  • adep: libsqlite3-dev
    SQLite 3 development files
  • adep: libhts-dev
    development files for the HTSlib
  • adep: libssl-dev
    Secure Sockets Layer toolkit - development files
  • adep: libcurl4-gnutls-dev
    development files and documentation for libcurl (GnuTLS flavour)
  • adep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • adep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)

Download lumpy-sv

FileSize (in kB)MD5 checksum
lumpy-sv_0.3.1+dfsg-7build3.dsc 2.3 kB be5a649c7ecfa21a5ea32b27f2871b91
lumpy-sv_0.3.1+dfsg.orig.tar.xz 109.2 kB 1167e4a94bceb29ac5b83cb170058e25
lumpy-sv_0.3.1+dfsg-7build3.debian.tar.xz 38,344.4 kB 8881f65ce44f7114f4eee6b19245aa27
Debian Package Source Repository (VCS: Git)
https://salsa.debian.org/med-team/lumpy-sv.git
Debian Package Source Repository (Browsable)
https://salsa.debian.org/med-team/lumpy-sv