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Source Package: cnvkit (0.9.13-2) [universe]

Links for cnvkit

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

It should generally not be necessary for users to contact the original maintainer.

The following binary packages are built from this source package:

adep: debhelper-compat (= 13)

Package not available
adep: dh-sequence-python3

virtual package provided by dh-python
adep: python3

interactive high-level object-oriented language (default python3 version)
adep: python3-setuptools

Python3 Distutils Enhancements
adep: pybuild-plugin-pyproject

Debian helper tools for packaging Python libraries using PEP517
adep: python3-pytest

Simple, powerful testing in Python3
adep: python3-pyfaidx (>> 0.8.1.3)

efficient random access to fasta subsequences for Python 3
adep: python3-biopython (>> 1.85)

Python3 library for bioinformatics
adep: python3-pandas (>> 2.2.3)

data structures for "relational" or "labeled" data
adep: python3-numpy

Python library for numerical computations (Python 3)
adep: python3-pysam (>> 0.23.0)

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
adep: python3-scipy (>> 1.14.1)

scientific tools for Python 3
adep: python3-matplotlib (>> 3.9)

Python based plotting system in a style similar to Matlab
adep: python3-pomegranate (>= 1.0)

Fast, flexible and easy to use probabilistic modelling
adep: r-bioc-dnacopy

R package: DNA copy number data analysis
adep: poppler-utils

PDF utilities (based on Poppler)

Debian Package Source Repository (VCS: Git): https://salsa.debian.org/med-team/cnvkit.git
Debian Package Source Repository (Browsable): https://salsa.debian.org/med-team/cnvkit